RNA–Protein interactions for RNA: ENST00000485780.1

SHROOM3-207, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 531 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-207ENST00000485780 SETDB2Q96T68 719 aa11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 METTL22Q9BUU2 404 aaPredicted RBP11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 BCL2L13Q9BXK5 485 aa11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 TNRC6CQ9HCJ0 1690 aaKnown RBP11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 COL11A2P13942 1736 aaPredicted RBP11.89□□□□□ -0.51
SHROOM3-207ENST00000485780 RNF123Q5XPI4 1314 aa11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 KCNA3P22001 575 aa11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 FKBP5Q13451 457 aaPredicted RBP11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 PARP10Q53GL7 1025 aa11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 ZNF526Q8TF50 670 aaPredicted RBP11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 DNAAF4Q8WXU2 420 aa11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 GPBP1L1Q9HC44 474 aaPredicted RBP11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 MAP3K2Q9Y2U5 619 aa11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 MYH3P11055 1940 aa11.88□□□□□ -0.51
SHROOM3-207ENST00000485780 H0YIN7 160 aa11.87□□□□□ -0.51
SHROOM3-207ENST00000485780 BCAR3O75815 825 aa11.87□□□□□ -0.51
SHROOM3-207ENST00000485780 ST5P78524 1137 aa11.87□□□□□ -0.51
SHROOM3-207ENST00000485780 RIC3Q7Z5B4 369 aa11.87□□□□□ -0.51
SHROOM3-207ENST00000485780 NLRP10Q86W26 655 aa11.87□□□□□ -0.51
SHROOM3-207ENST00000485780 C2CD5Q86YS7 1000 aa11.87□□□□□ -0.51
SHROOM3-207ENST00000485780 NIP7Q9Y221 180 aaKnown RBP eCLIP11.87□□□□□ -0.51
SHROOM3-207ENST00000485780 NTSR2O95665 410 aa11.86□□□□□ -0.51
SHROOM3-207ENST00000485780 IGKV5-2P06315 115 aa11.86□□□□□ -0.51
SHROOM3-207ENST00000485780 CNBD1Q8NA66 436 aa11.86□□□□□ -0.51
SHROOM3-207ENST00000485780 RCAN3Q9UKA8 241 aa11.86□□□□□ -0.51
SHROOM3-207ENST00000485780 PDZRN3Q9UPQ7 1066 aa11.86□□□□□ -0.51
SHROOM3-207ENST00000485780 ABCC4O15439 1325 aa11.86□□□□□ -0.51
SHROOM3-207ENST00000485780 F6X3S4 739 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 PDE6BP35913 854 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 C1QTNF8P60827 252 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 BEND3Q5T5X7 828 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 SUSD4Q5VX71 490 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 PRR5LQ6MZQ0 368 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 CCDC24Q8N4L8 307 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 TTLL6Q8N841 843 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 CCDC191Q8NCU4 936 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 LINS1Q8NG48 757 aa11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 NOB1Q9ULX3 412 aaKnown RBP11.85□□□□□ -0.51
SHROOM3-207ENST00000485780 ABCC12Q96J65 1359 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 NEURL1BA8MQ27 555 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 TRIM27P14373 513 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 GPTP24298 496 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 NEXNQ0ZGT2 675 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 ATF7IPQ6VMQ6 1270 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 PPP1R42Q7Z4L9 355 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 NBPF5PQ86XG9 351 aaPredicted RBP11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 ZNF622Q969S3 477 aaKnown RBP eCLIP11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 MYD88Q99836 296 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 BRIP1Q9BX63 1249 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 API5Q9BZZ5 524 aaKnown RBP11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 NYXQ9GZU5 481 aa11.84□□□□□ -0.51
SHROOM3-207ENST00000485780 KLRG2A4D1S0 409 aaPredicted RBP11.83□□□□□ -0.52
SHROOM3-207ENST00000485780 ATP5J2-PTCD1G3V325 749 aa11.83□□□□□ -0.52
SHROOM3-207ENST00000485780 IPO8O15397 1037 aaKnown RBP11.83□□□□□ -0.52
SHROOM3-207ENST00000485780 ALDH1L1O75891 902 aa11.83□□□□□ -0.52
SHROOM3-207ENST00000485780 C9orf131Q5VYM1 1079 aa11.83□□□□□ -0.52
SHROOM3-207ENST00000485780 TPTE2Q6XPS3 522 aa11.83□□□□□ -0.52
SHROOM3-207ENST00000485780 CDHR2Q9BYE9 1310 aa11.83□□□□□ -0.52
SHROOM3-207ENST00000485780 ARFGEF1Q9Y6D6 1849 aa11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 FAM177BA6PVY3 158 aa11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 PCCAP05165 728 aaPredicted RBP11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 GTF2E1P29083 439 aaPredicted RBP11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 MAPK8IP2Q13387 824 aaPredicted RBP11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 GCKRQ14397 625 aa11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 CWF19L2Q2TBE0 894 aaKnown RBP11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 SLC10A5Q5PT55 438 aa11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 ZKSCAN2Q63HK3 967 aa11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 ZBTB38Q8NAP3 1195 aaPredicted RBP11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 UTP14AQ9BVJ6 771 aaKnown RBP11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 CWC25Q9NXE8 425 aaPredicted RBP11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 RNF181Q9P0P0 153 aa11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 UTYO14607 1347 aa11.82□□□□□ -0.52
SHROOM3-207ENST00000485780 CASP7P55210 303 aa11.81□□□□□ -0.52
SHROOM3-207ENST00000485780 INTS3Q68E01 1043 aaKnown RBP11.81□□□□□ -0.52
SHROOM3-207ENST00000485780 SRCIN1Q9C0H9 1055 aa11.81□□□□□ -0.52
SHROOM3-207ENST00000485780 SH3TC1Q8TE82 1336 aa11.81□□□□□ -0.52
SHROOM3-207ENST00000485780 H7C1W4 665 aa11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 CCT4P50991 539 aaKnown RBP11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 RASSF7Q02833 373 aa11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 CRY2Q49AN0 593 aa11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 ERFEQ4G0M1 354 aa11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 NUTM1Q86Y26 1132 aa11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 CNKSR1Q969H4 720 aa11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 ZNF219Q9P2Y4 722 aaPredicted RBP11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 TRMT112Q9UI30 125 aaKnown RBP11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 CACNA1SQ13698 1873 aa11.8□□□□□ -0.52
SHROOM3-207ENST00000485780 STYK1Q6J9G0 422 aa11.79□□□□□ -0.52
SHROOM3-207ENST00000485780 SLC4A10Q6U841 1118 aa11.79□□□□□ -0.52
SHROOM3-207ENST00000485780 FRAT1Q92837 279 aaPredicted RBP11.79□□□□□ -0.52
SHROOM3-207ENST00000485780 MASTLQ96GX5 879 aa11.79□□□□□ -0.52
SHROOM3-207ENST00000485780 PLA2G12BQ9BX93 195 aa11.79□□□□□ -0.52
SHROOM3-207ENST00000485780 TNNQ9UQP3 1299 aa11.79□□□□□ -0.52
SHROOM3-207ENST00000485780 LRRC37AA6NMS7 1700 aa11.79□□□□□ -0.52
SHROOM3-207ENST00000485780 GRM8O00222 908 aa11.78□□□□□ -0.52
SHROOM3-207ENST00000485780 C21orf2O43822 256 aa11.78□□□□□ -0.52
SHROOM3-207ENST00000485780 SRGNP10124 158 aa11.78□□□□□ -0.52
SHROOM3-207ENST00000485780 RLBP1P12271 317 aa11.78□□□□□ -0.52
SHROOM3-207ENST00000485780 LMNB1P20700 586 aa11.78□□□□□ -0.52
SHROOM3-207ENST00000485780 SYNE4Q8N205 404 aa11.78□□□□□ -0.52
SHROOM3-207ENST00000485780 FAM89AQ96GI7 184 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms