RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 LMOD3Q0VAK6 560 aa13.12□□□□□ -0.31
CPSF4-213ENST00000484112 ARFGEF2Q9Y6D5 1785 aa13.12□□□□□ -0.31
CPSF4-213ENST00000484112 PAXIP1Q6ZW49 1069 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-213ENST00000484112 GPC2Q8N158 579 aa13.11□□□□□ -0.31
CPSF4-213ENST00000484112 RPGRQ92834 1020 aaKnown RBP13.11□□□□□ -0.31
CPSF4-213ENST00000484112 RUNDC1Q96C34 613 aa13.11□□□□□ -0.31
CPSF4-213ENST00000484112 NYXQ9GZU5 481 aa13.11□□□□□ -0.31
CPSF4-213ENST00000484112 WBP1LQ9NX94 342 aa13.11□□□□□ -0.31
CPSF4-213ENST00000484112 RRP7AQ9Y3A4 280 aaKnown RBP13.11□□□□□ -0.31
CPSF4-213ENST00000484112 RGL2O15211 777 aa13.1□□□□□ -0.31
CPSF4-213ENST00000484112 MYL6BP14649 208 aa13.1□□□□□ -0.31
CPSF4-213ENST00000484112 GPTP24298 496 aa13.1□□□□□ -0.31
CPSF4-213ENST00000484112 LMOD1P29536 600 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-213ENST00000484112 GRM1Q13255 1194 aa13.1□□□□□ -0.31
CPSF4-213ENST00000484112 PNISRQ8TF01 805 aaKnown RBP13.1□□□□□ -0.31
CPSF4-213ENST00000484112 ADAMTS8Q9UP79 889 aa13.1□□□□□ -0.31
CPSF4-213ENST00000484112 WDR33Q9C0J8 1336 aaKnown RBP13.1□□□□□ -0.31
CPSF4-213ENST00000484112 ABCC12Q96J65 1359 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 PCNTO95613 3336 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 RASSF10A6NK89 507 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 KIF6Q6ZMV9 814 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 TTLL7Q6ZT98 887 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 LARGE2Q8N3Y3 721 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 PSMD1Q99460 953 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 ZBTB3Q9H5J0 574 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 BABAM1Q9NWV8 329 aa13.09□□□□□ -0.31
CPSF4-213ENST00000484112 EPS15P42566 896 aa13.08□□□□□ -0.32
CPSF4-213ENST00000484112 MAP2K1Q02750 393 aaPredicted RBP13.08□□□□□ -0.32
CPSF4-213ENST00000484112 FMR1Q06787 632 aaKnown RBP eCLIP13.08□□□□□ -0.32
CPSF4-213ENST00000484112 CRY2Q49AN0 593 aa13.08□□□□□ -0.32
CPSF4-213ENST00000484112 CC2D2BQ6DHV5 1058 aa13.08□□□□□ -0.32
CPSF4-213ENST00000484112 RBM17Q96I25 401 aaKnown RBP13.08□□□□□ -0.32
CPSF4-213ENST00000484112 DDX21Q9NR30 783 aaKnown RBP eCLIP13.08□□□□□ -0.32
CPSF4-213ENST00000484112 MAP3K15Q6ZN16 1313 aa13.08□□□□□ -0.32
CPSF4-213ENST00000484112 ERVV-1B6SEH8 477 aa13.07□□□□□ -0.32
CPSF4-213ENST00000484112 HSPA8P11142 646 aaKnown RBP13.07□□□□□ -0.32
CPSF4-213ENST00000484112 TMPOP42166 694 aaKnown RBP13.07□□□□□ -0.32
CPSF4-213ENST00000484112 RIPK4P57078 832 aa13.07□□□□□ -0.32
CPSF4-213ENST00000484112 NCBP3Q53F19 620 aaKnown RBP13.07□□□□□ -0.32
CPSF4-213ENST00000484112 SUSD4Q5VX71 490 aa13.07□□□□□ -0.32
CPSF4-213ENST00000484112 SLC51AQ86UW1 340 aa13.07□□□□□ -0.32
CPSF4-213ENST00000484112 DLG5Q8TDM6 1919 aa13.07□□□□□ -0.32
CPSF4-213ENST00000484112 PPEF1O14829 653 aaPredicted RBP13.06□□□□□ -0.32
CPSF4-213ENST00000484112 NIM1KQ8IY84 436 aa13.06□□□□□ -0.32
CPSF4-213ENST00000484112 THUMPD2Q9BTF0 503 aaKnown RBP13.06□□□□□ -0.32
CPSF4-213ENST00000484112 TMX4Q9H1E5 349 aaPredicted RBP13.06□□□□□ -0.32
CPSF4-213ENST00000484112 MRS2Q9HD23 443 aa13.06□□□□□ -0.32
CPSF4-213ENST00000484112 TRAF5O00463 557 aa13.05□□□□□ -0.32
CPSF4-213ENST00000484112 PPIP5K2O43314 1243 aa13.05□□□□□ -0.32
CPSF4-213ENST00000484112 HOXA10P31260 410 aaPredicted RBP13.05□□□□□ -0.32
CPSF4-213ENST00000484112 SCNN1DP51172 638 aa13.05□□□□□ -0.32
CPSF4-213ENST00000484112 EIF4A1P60842 406 aaKnown RBP13.05□□□□□ -0.32
CPSF4-213ENST00000484112 CYP4F22Q6NT55 531 aa13.05□□□□□ -0.32
CPSF4-213ENST00000484112 ABHD8Q96I13 439 aa13.05□□□□□ -0.32
CPSF4-213ENST00000484112 CAPNS2Q96L46 248 aa13.05□□□□□ -0.32
CPSF4-213ENST00000484112 BEGAINQ9BUH8 593 aa13.05□□□□□ -0.32
CPSF4-213ENST00000484112 UBN2Q6ZU65 1347 aa13.05□□□□□ -0.32
CPSF4-213ENST00000484112 ADAMTSL1Q8N6G6 1762 aa13.04□□□□□ -0.32
CPSF4-213ENST00000484112 ECE1P42892 770 aa13.04□□□□□ -0.32
CPSF4-213ENST00000484112 AOC3Q16853 763 aa13.04□□□□□ -0.32
CPSF4-213ENST00000484112 GRIPAP1Q4V328 841 aa13.04□□□□□ -0.32
CPSF4-213ENST00000484112 C3orf67Q6ZVT6 689 aa13.04□□□□□ -0.32
CPSF4-213ENST00000484112 USP50Q70EL3 339 aaPredicted RBP13.04□□□□□ -0.32
CPSF4-213ENST00000484112 CRAMP1Q96RY5 1269 aa13.04□□□□□ -0.32
CPSF4-213ENST00000484112 COL4A5P29400 1685 aa13.04□□□□□ -0.32
CPSF4-213ENST00000484112 SNED1Q8TER0 1413 aa13.04□□□□□ -0.32
CPSF4-213ENST00000484112 CALD1Q05682 793 aaKnown RBP13.03□□□□□ -0.32
CPSF4-213ENST00000484112 PPP1R42Q7Z4L9 355 aa13.03□□□□□ -0.32
CPSF4-213ENST00000484112 CCDC146Q8IYE0 955 aa13.03□□□□□ -0.32
CPSF4-213ENST00000484112 ZNF34Q8IZ26 560 aa13.03□□□□□ -0.32
CPSF4-213ENST00000484112 NLRP3Q96P20 1036 aa13.03□□□□□ -0.32
CPSF4-213ENST00000484112 GPR101Q96P66 508 aaPredicted RBP13.03□□□□□ -0.32
CPSF4-213ENST00000484112 CCDC85CA6NKD9 419 aa13.02□□□□□ -0.33
CPSF4-213ENST00000484112 NTSR2O95665 410 aa13.02□□□□□ -0.33
CPSF4-213ENST00000484112 EIF2S2P20042 333 aaKnown RBP13.02□□□□□ -0.33
CPSF4-213ENST00000484112 CST9Q5W186 159 aa13.02□□□□□ -0.33
CPSF4-213ENST00000484112 GIGYF2Q6Y7W6 1299 aaKnown RBP13.02□□□□□ -0.33
CPSF4-213ENST00000484112 TSKSQ9UJT2 592 aa13.02□□□□□ -0.33
CPSF4-213ENST00000484112 LTBP1Q14766 1721 aa13.02□□□□□ -0.33
CPSF4-213ENST00000484112 AOC2O75106 756 aa13.01□□□□□ -0.33
CPSF4-213ENST00000484112 FAM161AQ3B820 660 aa13.01□□□□□ -0.33
CPSF4-213ENST00000484112 CCDC184Q52MB2 194 aa13.01□□□□□ -0.33
CPSF4-213ENST00000484112 PARP10Q53GL7 1025 aa13.01□□□□□ -0.33
CPSF4-213ENST00000484112 UTP14AQ9BVJ6 771 aaKnown RBP13.01□□□□□ -0.33
CPSF4-213ENST00000484112 ADARB2Q9NS39 739 aaKnown RBP13.01□□□□□ -0.33
CPSF4-213ENST00000484112 GPRC5DQ9NZD1 345 aa13.01□□□□□ -0.33
CPSF4-213ENST00000484112 TLL2Q9Y6L7 1015 aa13.01□□□□□ -0.33
CPSF4-213ENST00000484112 KDM3BQ7LBC6 1761 aa13.01□□□□□ -0.33
CPSF4-213ENST00000484112 NUP98P52948 1817 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 LAMB4A4D0S4 1761 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 IBTKQ9P2D0 1353 aaPredicted RBP13□□□□□ -0.33
CPSF4-213ENST00000484112 CELF2O95319 508 aaKnown RBP13□□□□□ -0.33
CPSF4-213ENST00000484112 ANXA1P04083 346 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 CXCL9Q07325 125 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 CCDC27Q2M243 656 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 SUPT20HQ8NEM7 779 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 BCL2L13Q9BXK5 485 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 ZNF408Q9H9D4 720 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 TSPYL4Q9UJ04 414 aa13□□□□□ -0.33
CPSF4-213ENST00000484112 ZNRF3Q9ULT6 936 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms