RNA–Protein interactions for RNA: ENST00000483981.2

SHANK1-208, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 422 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-208ENST00000483981 KSR2Q6VAB6 950 aa15.79■□□□□ 0.12
SHANK1-208ENST00000483981 PPP1R42Q7Z4L9 355 aa15.79■□□□□ 0.12
SHANK1-208ENST00000483981 RIC3Q7Z5B4 369 aa15.79■□□□□ 0.12
SHANK1-208ENST00000483981 UTP14AQ9BVJ6 771 aaKnown RBP15.79■□□□□ 0.12
SHANK1-208ENST00000483981 ATP5J2-PTCD1G3V325 749 aa15.78■□□□□ 0.12
SHANK1-208ENST00000483981 CRY2Q49AN0 593 aa15.78■□□□□ 0.12
SHANK1-208ENST00000483981 DALRD3Q5D0E6 543 aaKnown RBP15.78■□□□□ 0.12
SHANK1-208ENST00000483981 STYK1Q6J9G0 422 aa15.78■□□□□ 0.12
SHANK1-208ENST00000483981 SYNE4Q8N205 404 aa15.78■□□□□ 0.12
SHANK1-208ENST00000483981 METTL22Q9BUU2 404 aaPredicted RBP15.78■□□□□ 0.12
SHANK1-208ENST00000483981 CHD4Q14839 1912 aa15.78■□□□□ 0.12
SHANK1-208ENST00000483981 RNF123Q5XPI4 1314 aa15.77■□□□□ 0.12
SHANK1-208ENST00000483981 PI4KAP2A4QPH2 592 aa15.77■□□□□ 0.12
SHANK1-208ENST00000483981 FLIIQ13045 1269 aa15.77■□□□□ 0.12
SHANK1-208ENST00000483981 C3orf67Q6ZVT6 689 aa15.77■□□□□ 0.12
SHANK1-208ENST00000483981 TTLL6Q8N841 843 aa15.77■□□□□ 0.12
SHANK1-208ENST00000483981 PI4KAP1Q8N8J0 262 aa15.77■□□□□ 0.12
SHANK1-208ENST00000483981 MAP3K2Q9Y2U5 619 aa15.77■□□□□ 0.12
SHANK1-208ENST00000483981 NPHP1O15259 732 aa15.76■□□□□ 0.11
SHANK1-208ENST00000483981 DDX58O95786 925 aaKnown RBP15.76■□□□□ 0.11
SHANK1-208ENST00000483981 GTF2E1P29083 439 aaPredicted RBP15.76■□□□□ 0.11
SHANK1-208ENST00000483981 MASTLQ96GX5 879 aa15.76■□□□□ 0.11
SHANK1-208ENST00000483981 IGKV5-2P06315 115 aa15.75■□□□□ 0.11
SHANK1-208ENST00000483981 NPR1P16066 1061 aa15.75■□□□□ 0.11
SHANK1-208ENST00000483981 C7orf43Q8WVR3 580 aa15.75■□□□□ 0.11
SHANK1-208ENST00000483981 MYD88Q99836 296 aa15.75■□□□□ 0.11
SHANK1-208ENST00000483981 SLX4Q8IY92 1834 aa15.75■□□□□ 0.11
SHANK1-208ENST00000483981 SH3TC1Q8TE82 1336 aa15.74■□□□□ 0.11
SHANK1-208ENST00000483981 HOXA10P31260 410 aaPredicted RBP15.74■□□□□ 0.11
SHANK1-208ENST00000483981 ZNF622Q969S3 477 aaKnown RBP eCLIP15.74■□□□□ 0.11
SHANK1-208ENST00000483981 ZNF428Q96B54 188 aa15.74■□□□□ 0.11
SHANK1-208ENST00000483981 TRMT112Q9UI30 125 aaKnown RBP15.74■□□□□ 0.11
SHANK1-208ENST00000483981 DDX60Q8IY21 1712 aaKnown RBP15.74■□□□□ 0.11
SHANK1-208ENST00000483981 LAMB2P55268 1798 aa15.73■□□□□ 0.11
SHANK1-208ENST00000483981 HNRNPUQ00839 825 aaKnown RBP eCLIP15.73■□□□□ 0.11
SHANK1-208ENST00000483981 MRPL50Q8N5N7 158 aaKnown RBP15.73■□□□□ 0.11
SHANK1-208ENST00000483981 CCDC191Q8NCU4 936 aa15.73■□□□□ 0.11
SHANK1-208ENST00000483981 CNKSR1Q969H4 720 aa15.73■□□□□ 0.11
SHANK1-208ENST00000483981 HCLS1P14317 486 aaPredicted RBP15.72■□□□□ 0.11
SHANK1-208ENST00000483981 YY1P25490 414 aa15.72■□□□□ 0.11
SHANK1-208ENST00000483981 PRPF40BQ6NWY9 871 aaKnown RBP15.72■□□□□ 0.11
SHANK1-208ENST00000483981 ZBTB38Q8NAP3 1195 aaPredicted RBP15.72■□□□□ 0.11
SHANK1-208ENST00000483981 SSH1Q8WYL5 1049 aa15.72■□□□□ 0.11
SHANK1-208ENST00000483981 FAM89AQ96GI7 184 aa15.72■□□□□ 0.11
SHANK1-208ENST00000483981 NEURL1BA8MQ27 555 aa15.71■□□□□ 0.11
SHANK1-208ENST00000483981 CT47B1P0C2W7 299 aaPredicted RBP15.71■□□□□ 0.11
SHANK1-208ENST00000483981 FKBP5Q13451 457 aaPredicted RBP15.71■□□□□ 0.11
SHANK1-208ENST00000483981 ARHGAP27Q6ZUM4 889 aa15.71■□□□□ 0.11
SHANK1-208ENST00000483981 DNAAF4Q8WXU2 420 aa15.71■□□□□ 0.11
SHANK1-208ENST00000483981 NLRP3Q96P20 1036 aa15.71■□□□□ 0.11
SHANK1-208ENST00000483981 SNED1Q8TER0 1413 aa15.7■□□□□ 0.1
SHANK1-208ENST00000483981 CACNA1SQ13698 1873 aa15.7■□□□□ 0.1
SHANK1-208ENST00000483981 PCCAP05165 728 aaPredicted RBP15.7■□□□□ 0.1
SHANK1-208ENST00000483981 PRELPP51888 382 aa15.7■□□□□ 0.1
SHANK1-208ENST00000483981 CWF19L2Q2TBE0 894 aaKnown RBP15.7■□□□□ 0.1
SHANK1-208ENST00000483981 CRAMP1Q96RY5 1269 aa15.7■□□□□ 0.1
SHANK1-208ENST00000483981 CWC25Q9NXE8 425 aaPredicted RBP15.7■□□□□ 0.1
SHANK1-208ENST00000483981 ZBED9Q6R2W3 1325 aa15.69■□□□□ 0.1
SHANK1-208ENST00000483981 SBF1O95248 1867 aa15.69■□□□□ 0.1
SHANK1-208ENST00000483981 FER1L6Q2WGJ9 1857 aa15.69■□□□□ 0.1
SHANK1-208ENST00000483981 F6X3S4 739 aa15.69■□□□□ 0.1
SHANK1-208ENST00000483981 NFKBIEO00221 500 aa15.69■□□□□ 0.1
SHANK1-208ENST00000483981 C21orf2O43822 256 aa15.69■□□□□ 0.1
SHANK1-208ENST00000483981 ALDH1B1P30837 517 aa15.69■□□□□ 0.1
SHANK1-208ENST00000483981 SF3B3Q15393 1217 aaKnown RBP15.69■□□□□ 0.1
SHANK1-208ENST00000483981 ALDH1L2Q3SY69 923 aa15.69■□□□□ 0.1
SHANK1-208ENST00000483981 H7C1W4 665 aa15.68■□□□□ 0.1
SHANK1-208ENST00000483981 IRS4O14654 1257 aaPredicted RBP15.68■□□□□ 0.1
SHANK1-208ENST00000483981 BRPF1P55201 1214 aaPredicted RBP15.68■□□□□ 0.1
SHANK1-208ENST00000483981 CASP7P55210 303 aa15.68■□□□□ 0.1
SHANK1-208ENST00000483981 RTL5Q5HYW3 569 aaPredicted RBP15.68■□□□□ 0.1
SHANK1-208ENST00000483981 BEND3Q5T5X7 828 aa15.68■□□□□ 0.1
SHANK1-208ENST00000483981 LINS1Q8NG48 757 aa15.68■□□□□ 0.1
SHANK1-208ENST00000483981 JARID2Q92833 1246 aaPredicted RBP15.68■□□□□ 0.1
SHANK1-208ENST00000483981 CDHR2Q9BYE9 1310 aa15.68■□□□□ 0.1
SHANK1-208ENST00000483981 NEXNQ0ZGT2 675 aa15.67■□□□□ 0.1
SHANK1-208ENST00000483981 GCKRQ14397 625 aa15.67■□□□□ 0.1
SHANK1-208ENST00000483981 OLFM4Q6UX06 510 aa15.67■□□□□ 0.1
SHANK1-208ENST00000483981 RPGRQ92834 1020 aaKnown RBP15.67■□□□□ 0.1
SHANK1-208ENST00000483981 RBM17Q96I25 401 aaKnown RBP15.67■□□□□ 0.1
SHANK1-208ENST00000483981 COL4A1P02462 1669 aa15.67■□□□□ 0.1
SHANK1-208ENST00000483981 RARSP54136 660 aaKnown RBP15.66■□□□□ 0.1
SHANK1-208ENST00000483981 RASSF7Q02833 373 aa15.66■□□□□ 0.1
SHANK1-208ENST00000483981 SLC51AQ86UW1 340 aa15.66■□□□□ 0.1
SHANK1-208ENST00000483981 BCL2L13Q9BXK5 485 aa15.66■□□□□ 0.1
SHANK1-208ENST00000483981 ZNF219Q9P2Y4 722 aaPredicted RBP15.66■□□□□ 0.1
SHANK1-208ENST00000483981 ABCC4O15439 1325 aa15.66■□□□□ 0.1
SHANK1-208ENST00000483981 PTPRCP08575 1304 aa15.66■□□□□ 0.1
SHANK1-208ENST00000483981 LTBP3Q9NS15 1303 aa15.66■□□□□ 0.1
SHANK1-208ENST00000483981 TAF1P21675 1872 aa15.65■□□□□ 0.1
SHANK1-208ENST00000483981 PDE8AO60658 829 aa15.64■□□□□ 0.09
SHANK1-208ENST00000483981 SOGA3Q5TF21 947 aa15.64■□□□□ 0.09
SHANK1-208ENST00000483981 C9orf131Q5VYM1 1079 aa15.64■□□□□ 0.09
SHANK1-208ENST00000483981 ZNF784Q8NCA9 323 aaPredicted RBP15.64■□□□□ 0.09
SHANK1-208ENST00000483981 BBOX1O75936 387 aa15.63■□□□□ 0.09
SHANK1-208ENST00000483981 GRAPQ13588 217 aa15.63■□□□□ 0.09
SHANK1-208ENST00000483981 CCDC93Q567U6 631 aa15.63■□□□□ 0.09
SHANK1-208ENST00000483981 GRAPLQ8TC17 118 aaPredicted RBP15.63■□□□□ 0.09
SHANK1-208ENST00000483981 PLA2G12BQ9BX93 195 aa15.63■□□□□ 0.09
SHANK1-208ENST00000483981 SMC4Q9NTJ3 1288 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms