RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 CCDC191Q8NCU4 936 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 NARFQ9UHQ1 456 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 RTCBQ9Y3I0 505 aaKnown RBP10.37□□□□□ -0.75
USP4-210ENST00000483212 TUBGCP6Q96RT7 1819 aa10.37□□□□□ -0.75
USP4-210ENST00000483212 UBN2Q6ZU65 1347 aa10.36□□□□□ -0.75
USP4-210ENST00000483212 GNAI2P04899 355 aa10.36□□□□□ -0.75
USP4-210ENST00000483212 UBTFL1P0CB47 393 aaPredicted RBP10.36□□□□□ -0.75
USP4-210ENST00000483212 EZH2Q15910 746 aaKnown RBP10.36□□□□□ -0.75
USP4-210ENST00000483212 HSP90AB3PQ58FF7 597 aa10.36□□□□□ -0.75
USP4-210ENST00000483212 NLRP10Q86W26 655 aa10.36□□□□□ -0.75
USP4-210ENST00000483212 ARHGEF1Q92888 912 aaKnown RBP10.36□□□□□ -0.75
USP4-210ENST00000483212 SUCLG2Q96I99 432 aa10.36□□□□□ -0.75
USP4-210ENST00000483212 AK7Q96M32 723 aa10.36□□□□□ -0.75
USP4-210ENST00000483212 CWC25Q9NXE8 425 aaPredicted RBP10.36□□□□□ -0.75
USP4-210ENST00000483212 LRRFIP2Q9Y608 721 aaKnown RBP10.36□□□□□ -0.75
USP4-210ENST00000483212 COL24A1Q17RW2 1714 aa10.36□□□□□ -0.75
USP4-210ENST00000483212 USP42Q9H9J4 1324 aaKnown RBP10.35□□□□□ -0.75
USP4-210ENST00000483212 HMGB2P26583 209 aaKnown RBP10.35□□□□□ -0.75
USP4-210ENST00000483212 SSFA2P28290 1259 aa10.35□□□□□ -0.75
USP4-210ENST00000483212 EN1Q05925 392 aaPredicted RBP10.35□□□□□ -0.75
USP4-210ENST00000483212 CLEC4GQ6UXB4 293 aa10.35□□□□□ -0.75
USP4-210ENST00000483212 RPAP2Q8IXW5 612 aaPredicted RBP10.35□□□□□ -0.75
USP4-210ENST00000483212 SRP68Q9UHB9 627 aaKnown RBP10.35□□□□□ -0.75
USP4-210ENST00000483212 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.34□□□□□ -0.75
USP4-210ENST00000483212 ABCB7O75027 752 aa10.34□□□□□ -0.75
USP4-210ENST00000483212 ATP8B2P98198 1209 aa10.34□□□□□ -0.75
USP4-210ENST00000483212 MTX1Q13505 466 aa10.34□□□□□ -0.75
USP4-210ENST00000483212 EPHA10Q5JZY3 1008 aa10.34□□□□□ -0.75
USP4-210ENST00000483212 TRAPPC3LQ5T215 181 aa10.34□□□□□ -0.75
USP4-210ENST00000483212 USPL1Q5W0Q7 1092 aa10.34□□□□□ -0.75
USP4-210ENST00000483212 CENPQQ7L2Z9 268 aaPredicted RBP10.34□□□□□ -0.75
USP4-210ENST00000483212 DEFB132Q7Z7B7 95 aa10.34□□□□□ -0.75
USP4-210ENST00000483212 NPM2Q86SE8 214 aaKnown RBP10.34□□□□□ -0.75
USP4-210ENST00000483212 ANO8Q9HCE9 1232 aaPredicted RBP10.34□□□□□ -0.75
USP4-210ENST00000483212 C9orf78Q9NZ63 289 aaPredicted RBP10.34□□□□□ -0.75
USP4-210ENST00000483212 QSER1Q2KHR3 1735 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 PNMA6EA0A0J9YXQ4 647 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 PHF14O94880 888 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 PCCAP05165 728 aaPredicted RBP10.33□□□□□ -0.76
USP4-210ENST00000483212 GPTP24298 496 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 BAG6P46379 1132 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 POLA2Q14181 598 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 RABL6Q3YEC7 729 aaPredicted RBP10.33□□□□□ -0.76
USP4-210ENST00000483212 SUSD4Q5VX71 490 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 UBE3BQ7Z3V4 1068 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 CCDC125Q86Z20 511 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 SMC5Q8IY18 1101 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 ZBTB38Q8NAP3 1195 aaPredicted RBP10.33□□□□□ -0.76
USP4-210ENST00000483212 JARID2Q92833 1246 aaPredicted RBP10.33□□□□□ -0.76
USP4-210ENST00000483212 ARXQ96QS3 562 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 RWDD1Q9H446 243 aaPredicted RBP10.33□□□□□ -0.76
USP4-210ENST00000483212 CDHR2Q9BYE9 1310 aa10.33□□□□□ -0.76
USP4-210ENST00000483212 NTSR2O95665 410 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 GYS1P13807 737 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 FOXO4P98177 505 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 PARP10Q53GL7 1025 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 TBC1D9BQ66K14 1250 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 SSH3Q8TE77 659 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 PLA2G12BQ9BX93 195 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 BICC1Q9H694 974 aaKnown RBP10.32□□□□□ -0.76
USP4-210ENST00000483212 ZNF652Q9Y2D9 606 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 PNPLA7Q6ZV29 1317 aa10.32□□□□□ -0.76
USP4-210ENST00000483212 LAMB2P55268 1798 aa10.31□□□□□ -0.76
USP4-210ENST00000483212 RFC4P35249 363 aa10.31□□□□□ -0.76
USP4-210ENST00000483212 PPP1R42Q7Z4L9 355 aa10.31□□□□□ -0.76
USP4-210ENST00000483212 COL23A1Q86Y22 540 aaPredicted RBP10.31□□□□□ -0.76
USP4-210ENST00000483212 SYNE4Q8N205 404 aa10.31□□□□□ -0.76
USP4-210ENST00000483212 FAM89AQ96GI7 184 aa10.31□□□□□ -0.76
USP4-210ENST00000483212 DCTPP1Q9H773 170 aa10.31□□□□□ -0.76
USP4-210ENST00000483212 HDAC5Q9UQL6 1122 aa10.31□□□□□ -0.76
USP4-210ENST00000483212 NIP7Q9Y221 180 aaKnown RBP eCLIP10.31□□□□□ -0.76
USP4-210ENST00000483212 DDX60Q8IY21 1712 aaKnown RBP10.3□□□□□ -0.76
USP4-210ENST00000483212 ZPR1O75312 459 aa10.3□□□□□ -0.76
USP4-210ENST00000483212 RFX5P48382 616 aaPredicted RBP10.3□□□□□ -0.76
USP4-210ENST00000483212 SF3B2Q13435 895 aaKnown RBP10.3□□□□□ -0.76
USP4-210ENST00000483212 SLC15A2Q16348 729 aa10.3□□□□□ -0.76
USP4-210ENST00000483212 HMMRO75330 724 aa10.29□□□□□ -0.76
USP4-210ENST00000483212 CSF1RP07333 972 aa10.29□□□□□ -0.76
USP4-210ENST00000483212 TM4SF1P30408 202 aa10.29□□□□□ -0.76
USP4-210ENST00000483212 NFIXQ14938 502 aa10.29□□□□□ -0.76
USP4-210ENST00000483212 RTL5Q5HYW3 569 aaPredicted RBP10.29□□□□□ -0.76
USP4-210ENST00000483212 FLAD1Q8NFF5 587 aa10.29□□□□□ -0.76
USP4-210ENST00000483212 UPF1Q92900 1129 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP4-210ENST00000483212 GCC1Q96CN9 775 aa10.29□□□□□ -0.76
USP4-210ENST00000483212 UTP14AQ9BVJ6 771 aaKnown RBP10.29□□□□□ -0.76
USP4-210ENST00000483212 TFCP2L1Q9NZI6 479 aa10.29□□□□□ -0.76
USP4-210ENST00000483212 TRMT112Q9UI30 125 aaKnown RBP10.29□□□□□ -0.76
USP4-210ENST00000483212 SH3TC1Q8TE82 1336 aa10.29□□□□□ -0.76
USP4-210ENST00000483212 ABCC12Q96J65 1359 aa10.28□□□□□ -0.76
USP4-210ENST00000483212 IRS4O14654 1257 aaPredicted RBP10.28□□□□□ -0.76
USP4-210ENST00000483212 SRGAP3O43295 1099 aa10.28□□□□□ -0.76
USP4-210ENST00000483212 SKAP1Q86WV1 359 aa10.28□□□□□ -0.76
USP4-210ENST00000483212 STK32BQ9NY57 414 aa10.28□□□□□ -0.76
USP4-210ENST00000483212 PDZRN3Q9UPQ7 1066 aa10.28□□□□□ -0.76
USP4-210ENST00000483212 NOP58Q9Y2X3 529 aaKnown RBP10.28□□□□□ -0.76
USP4-210ENST00000483212 LRP5O75197 1615 aa10.28□□□□□ -0.76
USP4-210ENST00000483212 CARMIL3Q8ND23 1372 aa10.27□□□□□ -0.76
USP4-210ENST00000483212 NRXN2Q9P2S2 1712 aa10.27□□□□□ -0.76
USP4-210ENST00000483212 RIC1Q4ADV7 1423 aa10.27□□□□□ -0.77
USP4-210ENST00000483212 NUCB1Q02818 461 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms