RNA–Protein interactions for RNA: ENST00000482519.1

VAMP4-204, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 3

Gene VAMP4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-204ENST00000482519 RPGRQ92834 1020 aaKnown RBP21.36■■□□□ 1.01
VAMP4-204ENST00000482519 CHMP4AQ9BY43 222 aa21.36■■□□□ 1.01
VAMP4-204ENST00000482519 SBF1O95248 1867 aa21.36■■□□□ 1.01
VAMP4-204ENST00000482519 LMNB1P20700 586 aa21.35■■□□□ 1.01
VAMP4-204ENST00000482519 ALDH1B1P30837 517 aa21.35■■□□□ 1.01
VAMP4-204ENST00000482519 GOLGA2Q08379 1002 aa21.35■■□□□ 1.01
VAMP4-204ENST00000482519 TWISTNBQ3B726 338 aaPredicted RBP21.35■■□□□ 1.01
VAMP4-204ENST00000482519 RIC3Q7Z5B4 369 aa21.35■■□□□ 1.01
VAMP4-204ENST00000482519 WDR63Q8IWG1 891 aa21.35■■□□□ 1.01
VAMP4-204ENST00000482519 TRMT112Q9UI30 125 aaKnown RBP21.35■■□□□ 1.01
VAMP4-204ENST00000482519 ATP5J2-PTCD1G3V325 749 aa21.34■■□□□ 1.01
VAMP4-204ENST00000482519 NFKBIEO00221 500 aa21.34■■□□□ 1.01
VAMP4-204ENST00000482519 FANCIQ9NVI1 1328 aa21.33■■□□□ 1.01
VAMP4-204ENST00000482519 CCDC88AQ3V6T2 1871 aa21.33■■□□□ 1.01
VAMP4-204ENST00000482519 PRELPP51888 382 aa21.33■■□□□ 1.01
VAMP4-204ENST00000482519 CRY2Q49AN0 593 aa21.33■■□□□ 1.01
VAMP4-204ENST00000482519 SOGA3Q5TF21 947 aa21.33■■□□□ 1.01
VAMP4-204ENST00000482519 C3orf67Q6ZVT6 689 aa21.33■■□□□ 1.01
VAMP4-204ENST00000482519 NLRP3Q96P20 1036 aa21.33■■□□□ 1.01
VAMP4-204ENST00000482519 STK31Q9BXU1 1019 aa21.33■■□□□ 1.01
VAMP4-204ENST00000482519 ARFGEF2Q9Y6D5 1785 aa21.33■■□□□ 1
VAMP4-204ENST00000482519 OLFM4Q6UX06 510 aa21.32■■□□□ 1
VAMP4-204ENST00000482519 SYNE4Q8N205 404 aa21.32■■□□□ 1
VAMP4-204ENST00000482519 TAOK3Q9H2K8 898 aa21.32■■□□□ 1
VAMP4-204ENST00000482519 HCLS1P14317 486 aaPredicted RBP21.31■■□□□ 1
VAMP4-204ENST00000482519 RBM17Q96I25 401 aaKnown RBP21.31■■□□□ 1
VAMP4-204ENST00000482519 SH3TC1Q8TE82 1336 aa21.3■■□□□ 1
VAMP4-204ENST00000482519 C1QTNF8P60827 252 aa21.3■■□□□ 1
VAMP4-204ENST00000482519 CCDC93Q567U6 631 aa21.3■■□□□ 1
VAMP4-204ENST00000482519 SLC10A5Q5PT55 438 aa21.3■■□□□ 1
VAMP4-204ENST00000482519 C7orf43Q8WVR3 580 aa21.3■■□□□ 1
VAMP4-204ENST00000482519 FER1L6Q2WGJ9 1857 aa21.3■■□□□ 1
VAMP4-204ENST00000482519 RNF123Q5XPI4 1314 aa21.29■■□□□ 1
VAMP4-204ENST00000482519 RIC1Q4ADV7 1423 aa21.29■■□□□ 1
VAMP4-204ENST00000482519 DDX58O95786 925 aaKnown RBP21.29■■□□□ 1
VAMP4-204ENST00000482519 EXOSC9Q06265 439 aaKnown RBP21.29■■□□□ 1
VAMP4-204ENST00000482519 RTL5Q5HYW3 569 aaPredicted RBP21.29■■□□□ 1
VAMP4-204ENST00000482519 MYD88Q99836 296 aa21.29■■□□□ 1
VAMP4-204ENST00000482519 ISCA1Q9BUE6 129 aa21.29■■□□□ 1
VAMP4-204ENST00000482519 SPINK5Q9NQ38 1064 aaPredicted RBP21.29■■□□□ 1
VAMP4-204ENST00000482519 SLC4A2P04920 1241 aa21.28■■□□□ 1
VAMP4-204ENST00000482519 HOXA10P31260 410 aaPredicted RBP21.28■■□□□ 1
VAMP4-204ENST00000482519 FAM89AQ96GI7 184 aa21.28■■□□□ 1
VAMP4-204ENST00000482519 MYH16Q9H6N6 1097 aa21.28■■□□□ 1
VAMP4-204ENST00000482519 NMRK2Q9NPI5 230 aa21.27■■□□□ 1
VAMP4-204ENST00000482519 KDM2BQ8NHM5 1336 aa21.27■□□□□ 0.99
VAMP4-204ENST00000482519 RTKN2Q8IZC4 609 aa21.26■□□□□ 0.99
VAMP4-204ENST00000482519 CRAMP1Q96RY5 1269 aa21.26■□□□□ 0.99
VAMP4-204ENST00000482519 MAP3K2Q9Y2U5 619 aa21.26■□□□□ 0.99
VAMP4-204ENST00000482519 PPEF1O14829 653 aaPredicted RBP21.25■□□□□ 0.99
VAMP4-204ENST00000482519 G2E3Q7L622 706 aa21.25■□□□□ 0.99
VAMP4-204ENST00000482519 TIAM2Q8IVF5 1701 aa21.25■□□□□ 0.99
VAMP4-204ENST00000482519 LTBP3Q9NS15 1303 aa21.25■□□□□ 0.99
VAMP4-204ENST00000482519 PI4KAP2A4QPH2 592 aa21.24■□□□□ 0.99
VAMP4-204ENST00000482519 CCER2I3L3R5 266 aa21.24■□□□□ 0.99
VAMP4-204ENST00000482519 FKBP4Q02790 459 aaKnown RBP eCLIP21.24■□□□□ 0.99
VAMP4-204ENST00000482519 KSR2Q6VAB6 950 aa21.24■□□□□ 0.99
VAMP4-204ENST00000482519 PI4KAP1Q8N8J0 262 aa21.24■□□□□ 0.99
VAMP4-204ENST00000482519 METTL22Q9BUU2 404 aaPredicted RBP21.24■□□□□ 0.99
VAMP4-204ENST00000482519 ZNF277Q9NRM2 450 aaPredicted RBP21.24■□□□□ 0.99
VAMP4-204ENST00000482519 ZC3H4Q9UPT8 1303 aaKnown RBP21.24■□□□□ 0.99
VAMP4-204ENST00000482519 LAMB2P55268 1798 aa21.23■□□□□ 0.99
VAMP4-204ENST00000482519 KIF3CO14782 793 aa21.23■□□□□ 0.99
VAMP4-204ENST00000482519 VAMP4O75379 141 aa21.23■□□□□ 0.99
VAMP4-204ENST00000482519 TRIM28Q13263 835 aaKnown RBP21.23■□□□□ 0.99
VAMP4-204ENST00000482519 DDX46Q7L014 1031 aaKnown RBP21.23■□□□□ 0.99
VAMP4-204ENST00000482519 TMX4Q9H1E5 349 aaPredicted RBP21.23■□□□□ 0.99
VAMP4-204ENST00000482519 RRAGCQ9HB90 399 aa21.23■□□□□ 0.99
VAMP4-204ENST00000482519 ABCC4O15439 1325 aa21.23■□□□□ 0.99
VAMP4-204ENST00000482519 SLC51AQ86UW1 340 aa21.22■□□□□ 0.99
VAMP4-204ENST00000482519 JARID2Q92833 1246 aaPredicted RBP21.22■□□□□ 0.99
VAMP4-204ENST00000482519 CWC25Q9NXE8 425 aaPredicted RBP21.22■□□□□ 0.99
VAMP4-204ENST00000482519 DICER1Q9UPY3 1922 aaKnown RBP21.21■□□□□ 0.99
VAMP4-204ENST00000482519 GLTPD2A6NH11 291 aa21.21■□□□□ 0.99
VAMP4-204ENST00000482519 IRS4O14654 1257 aaPredicted RBP21.21■□□□□ 0.99
VAMP4-204ENST00000482519 CC2D2BQ6DHV5 1058 aa21.21■□□□□ 0.99
VAMP4-204ENST00000482519 DPY19L2Q6NUT2 758 aa21.21■□□□□ 0.99
VAMP4-204ENST00000482519 CCDC191Q8NCU4 936 aa21.21■□□□□ 0.99
VAMP4-204ENST00000482519 DDX60Q8IY21 1712 aaKnown RBP21.21■□□□□ 0.99
VAMP4-204ENST00000482519 NEXNQ0ZGT2 675 aa21.2■□□□□ 0.98
VAMP4-204ENST00000482519 DIEXFQ68CQ4 756 aaKnown RBP21.2■□□□□ 0.98
VAMP4-204ENST00000482519 C16orf71Q8IYS4 520 aaPredicted RBP21.2■□□□□ 0.98
VAMP4-204ENST00000482519 ZBTB38Q8NAP3 1195 aaPredicted RBP21.2■□□□□ 0.98
VAMP4-204ENST00000482519 ZNF521Q96K83 1311 aa21.2■□□□□ 0.98
VAMP4-204ENST00000482519 FLIIQ13045 1269 aa21.19■□□□□ 0.98
VAMP4-204ENST00000482519 FKBP5Q13451 457 aaPredicted RBP21.19■□□□□ 0.98
VAMP4-204ENST00000482519 TAF1P21675 1872 aa21.18■□□□□ 0.98
VAMP4-204ENST00000482519 BBOX1O75936 387 aa21.18■□□□□ 0.98
VAMP4-204ENST00000482519 ATP6V0A2Q9Y487 856 aa21.18■□□□□ 0.98
VAMP4-204ENST00000482519 IARSP41252 1262 aaKnown RBP21.17■□□□□ 0.98
VAMP4-204ENST00000482519 GRAPQ13588 217 aa21.17■□□□□ 0.98
VAMP4-204ENST00000482519 CWF19L2Q2TBE0 894 aaKnown RBP21.17■□□□□ 0.98
VAMP4-204ENST00000482519 GRAPLQ8TC17 118 aaPredicted RBP21.17■□□□□ 0.98
VAMP4-204ENST00000482519 PSMD1Q99460 953 aa21.17■□□□□ 0.98
VAMP4-204ENST00000482519 TOMM70O94826 608 aa21.16■□□□□ 0.98
VAMP4-204ENST00000482519 PCCAP05165 728 aaPredicted RBP21.16■□□□□ 0.98
VAMP4-204ENST00000482519 IGKV5-2P06315 115 aa21.16■□□□□ 0.98
VAMP4-204ENST00000482519 HSP90B1P14625 803 aaKnown RBP21.16■□□□□ 0.98
VAMP4-204ENST00000482519 GRIPAP1Q4V328 841 aa21.16■□□□□ 0.98
VAMP4-204ENST00000482519 CACNA1FO60840 1977 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms