RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TESK2Q96S53 571 aa6.81□□□□□ -1.32
USP4-209ENST00000475873 PSMD1Q99460 953 aa6.81□□□□□ -1.32
USP4-209ENST00000475873 PRO3102Q9H379 93 aa6.81□□□□□ -1.32
USP4-209ENST00000475873 RBM27Q9P2N5 1060 aaKnown RBP6.81□□□□□ -1.32
USP4-209ENST00000475873 EYSQ5T1H1 3165 aa6.81□□□□□ -1.32
USP4-209ENST00000475873 MRC1P22897 1456 aa6.8□□□□□ -1.32
USP4-209ENST00000475873 UBR2Q8IWV8 1755 aa6.8□□□□□ -1.32
USP4-209ENST00000475873 PPM1GO15355 546 aaPredicted RBP6.8□□□□□ -1.32
USP4-209ENST00000475873 CAMTA2O94983 1202 aa6.8□□□□□ -1.32
USP4-209ENST00000475873 HSP90AB1P08238 724 aaKnown RBP6.8□□□□□ -1.32
USP4-209ENST00000475873 NPR1P16066 1061 aa6.8□□□□□ -1.32
USP4-209ENST00000475873 GMPSP49915 693 aaPredicted RBP6.8□□□□□ -1.32
USP4-209ENST00000475873 CHRDL2Q6WN34 429 aa6.8□□□□□ -1.32
USP4-209ENST00000475873 JDP2Q8WYK2 163 aa6.8□□□□□ -1.32
USP4-209ENST00000475873 TBC1D2BQ9UPU7 963 aa6.8□□□□□ -1.32
USP4-209ENST00000475873 ST20-MTHFSA0A0A6YYL1 179 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 EGFRP00533 1210 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 MTHFSP49914 203 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 ZNF157P51786 506 aaPredicted RBP6.79□□□□□ -1.32
USP4-209ENST00000475873 CAP1Q01518 475 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 CXCL9Q07325 125 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 CDC37L1Q7L3B6 337 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 RASAL3Q86YV0 1011 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 AEBP1Q8IUX7 1158 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 GBA2Q9HCG7 927 aaPredicted RBP6.79□□□□□ -1.32
USP4-209ENST00000475873 HDAC9Q9UKV0 1011 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 NPC1L1Q9UHC9 1359 aa6.79□□□□□ -1.32
USP4-209ENST00000475873 PRUNE2Q8WUY3 3088 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 ADM5C9JUS6 153 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 GPR25O00155 361 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 ST5P78524 1137 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 LARGE2Q8N3Y3 721 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 ZC3H15Q8WU90 426 aaKnown RBP6.78□□□□□ -1.32
USP4-209ENST00000475873 CCDC102AQ96A19 550 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 CARD14Q9BXL6 1004 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 LGR6Q9HBX8 967 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 POLKQ9UBT6 870 aa6.78□□□□□ -1.32
USP4-209ENST00000475873 PLEKHO1Q53GL0 409 aaPredicted RBP6.77□□□□□ -1.33
USP4-209ENST00000475873 LRCH3Q96II8 777 aa6.77□□□□□ -1.33
USP4-209ENST00000475873 SETDB2Q96T68 719 aa6.77□□□□□ -1.33
USP4-209ENST00000475873 SLC52A2Q9HAB3 445 aa6.77□□□□□ -1.33
USP4-209ENST00000475873 LAMB4A4D0S4 1761 aa6.77□□□□□ -1.33
USP4-209ENST00000475873 AOC3Q16853 763 aa6.76□□□□□ -1.33
USP4-209ENST00000475873 NOM1Q5C9Z4 860 aaKnown RBP6.76□□□□□ -1.33
USP4-209ENST00000475873 RAPGEFL1Q9UHV5 662 aa6.76□□□□□ -1.33
USP4-209ENST00000475873 ABCC12Q96J65 1359 aa6.76□□□□□ -1.33
USP4-209ENST00000475873 ASTN2O75129 1339 aaPredicted RBP6.76□□□□□ -1.33
USP4-209ENST00000475873 A1BGP04217 495 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 CRY2Q49AN0 593 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 MOB2Q70IA6 237 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 OTOP1Q7RTM1 612 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 SAMD7Q7Z3H4 446 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 KRT26Q7Z3Y9 468 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 NBPF5PQ86XG9 351 aaPredicted RBP6.75□□□□□ -1.33
USP4-209ENST00000475873 NIM1KQ8IY84 436 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 VSIG10Q8N0Z9 540 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 MPNDQ8N594 471 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 ARMC5Q96C12 935 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 CARD11Q9BXL7 1154 aa6.75□□□□□ -1.33
USP4-209ENST00000475873 ZNF330Q9Y3S2 320 aaPredicted RBP6.75□□□□□ -1.33
USP4-209ENST00000475873 LAMA2P24043 3122 aaKnown RBP6.74□□□□□ -1.33
USP4-209ENST00000475873 A0A087WZG4 1122 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 YDJCA8MPS7 323 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 NPHP1O15259 732 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 PPIP5K2O43314 1243 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 FKTNO75072 461 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 PIP4K2AP48426 406 aaPredicted RBP6.74□□□□□ -1.33
USP4-209ENST00000475873 AMOTQ4VCS5 1084 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 C1orf141Q5JVX7 400 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 C2orf69Q8N8R5 385 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 SIN3AQ96ST3 1273 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 PRDM6Q9NQX0 595 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 CNOT7Q9UIV1 285 aaKnown RBP6.74□□□□□ -1.33
USP4-209ENST00000475873 ERBB4Q15303 1308 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 CDHR2Q9BYE9 1310 aa6.74□□□□□ -1.33
USP4-209ENST00000475873 KDM3BQ7LBC6 1761 aa6.73□□□□□ -1.33
USP4-209ENST00000475873 RNMTO43148 476 aaKnown RBP6.73□□□□□ -1.33
USP4-209ENST00000475873 RAD17O75943 681 aa6.73□□□□□ -1.33
USP4-209ENST00000475873 IL6STP40189 918 aaPredicted RBP6.73□□□□□ -1.33
USP4-209ENST00000475873 INTS3Q68E01 1043 aaKnown RBP6.73□□□□□ -1.33
USP4-209ENST00000475873 C3orf67Q6ZVT6 689 aa6.73□□□□□ -1.33
USP4-209ENST00000475873 MICALL2Q8IY33 904 aa6.73□□□□□ -1.33
USP4-209ENST00000475873 ZNF496Q96IT1 587 aaPredicted RBP6.73□□□□□ -1.33
USP4-209ENST00000475873 CFHR5Q9BXR6 569 aa6.73□□□□□ -1.33
USP4-209ENST00000475873 ZNRF3Q9ULT6 936 aa6.73□□□□□ -1.33
USP4-209ENST00000475873 ZBTB12Q9Y330 459 aaPredicted RBP6.73□□□□□ -1.33
USP4-209ENST00000475873 TRIM17Q9Y577 477 aa6.73□□□□□ -1.33
USP4-209ENST00000475873 RIC1Q4ADV7 1423 aa6.73□□□□□ -1.33
USP4-209ENST00000475873 FAM177BA6PVY3 158 aa6.72□□□□□ -1.33
USP4-209ENST00000475873 TCERG1O14776 1098 aaKnown RBP6.72□□□□□ -1.33
USP4-209ENST00000475873 ALDH1B1P30837 517 aa6.72□□□□□ -1.33
USP4-209ENST00000475873 TM4SF4P48230 202 aa6.72□□□□□ -1.33
USP4-209ENST00000475873 TBC1D10BQ4KMP7 808 aaPredicted RBP6.72□□□□□ -1.33
USP4-209ENST00000475873 CC2D2BQ6DHV5 1058 aa6.72□□□□□ -1.33
USP4-209ENST00000475873 Q7L0L9 218 aa6.72□□□□□ -1.33
USP4-209ENST00000475873 DZIP3Q86Y13 1208 aaKnown RBP6.72□□□□□ -1.33
USP4-209ENST00000475873 CDCA5Q96FF9 252 aa6.72□□□□□ -1.33
USP4-209ENST00000475873 ZNF333Q96JL9 665 aa6.72□□□□□ -1.33
USP4-209ENST00000475873 DUOX1Q9NRD9 1551 aa6.72□□□□□ -1.33
USP4-209ENST00000475873 HEG1Q9ULI3 1381 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms