RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 PPP1R42Q7Z4L9 355 aa24.38■■□□□ 1.49
PTCD3-210ENST00000473829 ATP5J2-PTCD1G3V325 749 aa24.37■■□□□ 1.49
PTCD3-210ENST00000473829 G2E3Q7L622 706 aa24.37■■□□□ 1.49
PTCD3-210ENST00000473829 MASTLQ96GX5 879 aa24.37■■□□□ 1.49
PTCD3-210ENST00000473829 ISCA1Q9BUE6 129 aa24.37■■□□□ 1.49
PTCD3-210ENST00000473829 UTP14AQ9BVJ6 771 aaKnown RBP24.37■■□□□ 1.49
PTCD3-210ENST00000473829 STK31Q9BXU1 1019 aa24.37■■□□□ 1.49
PTCD3-210ENST00000473829 CHMP4AQ9BY43 222 aa24.37■■□□□ 1.49
PTCD3-210ENST00000473829 CACNA1FO60840 1977 aa24.36■■□□□ 1.49
PTCD3-210ENST00000473829 DDX60Q8IY21 1712 aaKnown RBP24.36■■□□□ 1.49
PTCD3-210ENST00000473829 C3orf67Q6ZVT6 689 aa24.36■■□□□ 1.49
PTCD3-210ENST00000473829 SYNE4Q8N205 404 aa24.36■■□□□ 1.49
PTCD3-210ENST00000473829 ADCY9O60503 1353 aa24.36■■□□□ 1.49
PTCD3-210ENST00000473829 SBF1O95248 1867 aa24.35■■□□□ 1.49
PTCD3-210ENST00000473829 CRY2Q49AN0 593 aa24.35■■□□□ 1.49
PTCD3-210ENST00000473829 RIC3Q7Z5B4 369 aa24.35■■□□□ 1.49
PTCD3-210ENST00000473829 SLC4A2P04920 1241 aa24.34■■□□□ 1.49
PTCD3-210ENST00000473829 NPR1P16066 1061 aa24.34■■□□□ 1.49
PTCD3-210ENST00000473829 PRPF40BQ6NWY9 871 aaKnown RBP24.34■■□□□ 1.49
PTCD3-210ENST00000473829 FER1L6Q2WGJ9 1857 aa24.34■■□□□ 1.49
PTCD3-210ENST00000473829 ZNF784Q8NCA9 323 aaPredicted RBP24.33■■□□□ 1.49
PTCD3-210ENST00000473829 CNKSR1Q969H4 720 aa24.33■■□□□ 1.49
PTCD3-210ENST00000473829 CDCA7LQ96GN5 454 aa24.33■■□□□ 1.49
PTCD3-210ENST00000473829 ZNF219Q9P2Y4 722 aaPredicted RBP24.33■■□□□ 1.49
PTCD3-210ENST00000473829 RNF123Q5XPI4 1314 aa24.33■■□□□ 1.48
PTCD3-210ENST00000473829 C21orf2O43822 256 aa24.32■■□□□ 1.48
PTCD3-210ENST00000473829 RASSF7Q02833 373 aa24.32■■□□□ 1.48
PTCD3-210ENST00000473829 SLFN5Q08AF3 891 aa24.32■■□□□ 1.48
PTCD3-210ENST00000473829 MYD88Q99836 296 aa24.32■■□□□ 1.48
PTCD3-210ENST00000473829 TRMT112Q9UI30 125 aaKnown RBP24.32■■□□□ 1.48
PTCD3-210ENST00000473829 E9PSI1 815 aa24.31■■□□□ 1.48
PTCD3-210ENST00000473829 DDX58O95786 925 aaKnown RBP24.31■■□□□ 1.48
PTCD3-210ENST00000473829 SLC10A5Q5PT55 438 aa24.31■■□□□ 1.48
PTCD3-210ENST00000473829 MAP3K2Q9Y2U5 619 aa24.31■■□□□ 1.48
PTCD3-210ENST00000473829 SH3TC1Q8TE82 1336 aa24.31■■□□□ 1.48
PTCD3-210ENST00000473829 PI4KAP2A4QPH2 592 aa24.3■■□□□ 1.48
PTCD3-210ENST00000473829 TRIM28Q13263 835 aaKnown RBP24.3■■□□□ 1.48
PTCD3-210ENST00000473829 PI4KAP1Q8N8J0 262 aa24.3■■□□□ 1.48
PTCD3-210ENST00000473829 METTL22Q9BUU2 404 aaPredicted RBP24.3■■□□□ 1.48
PTCD3-210ENST00000473829 NFKBIEO00221 500 aa24.29■■□□□ 1.48
PTCD3-210ENST00000473829 HCLS1P14317 486 aaPredicted RBP24.29■■□□□ 1.48
PTCD3-210ENST00000473829 PRELPP51888 382 aa24.29■■□□□ 1.48
PTCD3-210ENST00000473829 FLIIQ13045 1269 aa24.29■■□□□ 1.48
PTCD3-210ENST00000473829 KSR2Q6VAB6 950 aa24.29■■□□□ 1.48
PTCD3-210ENST00000473829 CCDC88AQ3V6T2 1871 aa24.29■■□□□ 1.48
PTCD3-210ENST00000473829 C7orf43Q8WVR3 580 aa24.28■■□□□ 1.48
PTCD3-210ENST00000473829 FAM89AQ96GI7 184 aa24.28■■□□□ 1.48
PTCD3-210ENST00000473829 HOXA10P31260 410 aaPredicted RBP24.27■■□□□ 1.48
PTCD3-210ENST00000473829 OLFM4Q6UX06 510 aa24.27■■□□□ 1.48
PTCD3-210ENST00000473829 RPGRQ92834 1020 aaKnown RBP24.27■■□□□ 1.48
PTCD3-210ENST00000473829 NLRP3Q96P20 1036 aa24.27■■□□□ 1.48
PTCD3-210ENST00000473829 IGKV5-2P06315 115 aa24.26■■□□□ 1.47
PTCD3-210ENST00000473829 RTL5Q5HYW3 569 aaPredicted RBP24.26■■□□□ 1.47
PTCD3-210ENST00000473829 C9orf131Q5VYM1 1079 aa24.26■■□□□ 1.47
PTCD3-210ENST00000473829 SLC51AQ86UW1 340 aa24.26■■□□□ 1.47
PTCD3-210ENST00000473829 TRMT2AQ8IZ69 625 aaKnown RBP24.26■■□□□ 1.47
PTCD3-210ENST00000473829 TAF1P21675 1872 aa24.26■■□□□ 1.47
PTCD3-210ENST00000473829 TIAM2Q8IVF5 1701 aa24.25■■□□□ 1.47
PTCD3-210ENST00000473829 ALDH1B1P30837 517 aa24.24■■□□□ 1.47
PTCD3-210ENST00000473829 FKBP5Q13451 457 aaPredicted RBP24.24■■□□□ 1.47
PTCD3-210ENST00000473829 CCDC191Q8NCU4 936 aa24.24■■□□□ 1.47
PTCD3-210ENST00000473829 RNF181Q9P0P0 153 aa24.24■■□□□ 1.47
PTCD3-210ENST00000473829 SNED1Q8TER0 1413 aa24.24■■□□□ 1.47
PTCD3-210ENST00000473829 COL4A1P02462 1669 aa24.24■■□□□ 1.47
PTCD3-210ENST00000473829 CRAMP1Q96RY5 1269 aa24.23■■□□□ 1.47
PTCD3-210ENST00000473829 CWC25Q9NXE8 425 aaPredicted RBP24.23■■□□□ 1.47
PTCD3-210ENST00000473829 CWF19L2Q2TBE0 894 aaKnown RBP24.22■■□□□ 1.47
PTCD3-210ENST00000473829 ZBTB38Q8NAP3 1195 aaPredicted RBP24.22■■□□□ 1.47
PTCD3-210ENST00000473829 JARID2Q92833 1246 aaPredicted RBP24.22■■□□□ 1.47
PTCD3-210ENST00000473829 RBM17Q96I25 401 aaKnown RBP24.22■■□□□ 1.47
PTCD3-210ENST00000473829 ABCC4O15439 1325 aa24.21■■□□□ 1.47
PTCD3-210ENST00000473829 IRS4O14654 1257 aaPredicted RBP24.21■■□□□ 1.47
PTCD3-210ENST00000473829 DICER1Q9UPY3 1922 aaKnown RBP24.21■■□□□ 1.47
PTCD3-210ENST00000473829 LTBP3Q9NS15 1303 aa24.2■■□□□ 1.46
PTCD3-210ENST00000473829 NEURL1BA8MQ27 555 aa24.2■■□□□ 1.46
PTCD3-210ENST00000473829 PCCAP05165 728 aaPredicted RBP24.2■■□□□ 1.46
PTCD3-210ENST00000473829 LMNB1P20700 586 aa24.2■■□□□ 1.46
PTCD3-210ENST00000473829 CCDC93Q567U6 631 aa24.2■■□□□ 1.46
PTCD3-210ENST00000473829 SOGA3Q5TF21 947 aa24.2■■□□□ 1.46
PTCD3-210ENST00000473829 ZNF526Q8TF50 670 aaPredicted RBP24.2■■□□□ 1.46
PTCD3-210ENST00000473829 DNAAF4Q8WXU2 420 aa24.2■■□□□ 1.46
PTCD3-210ENST00000473829 F6X3S4 739 aa24.19■■□□□ 1.46
PTCD3-210ENST00000473829 NEXNQ0ZGT2 675 aa24.19■■□□□ 1.46
PTCD3-210ENST00000473829 TAOK3Q9H2K8 898 aa24.19■■□□□ 1.46
PTCD3-210ENST00000473829 PPEF1O14829 653 aaPredicted RBP24.18■■□□□ 1.46
PTCD3-210ENST00000473829 HNRNPUQ00839 825 aaKnown RBP eCLIP24.18■■□□□ 1.46
PTCD3-210ENST00000473829 SF3B3Q15393 1217 aaKnown RBP24.17■■□□□ 1.46
PTCD3-210ENST00000473829 MRPL50Q8N5N7 158 aaKnown RBP24.17■■□□□ 1.46
PTCD3-210ENST00000473829 LRRC37AA6NMS7 1700 aa24.16■■□□□ 1.46
PTCD3-210ENST00000473829 MYH3P11055 1940 aa24.16■■□□□ 1.46
PTCD3-210ENST00000473829 SSH1Q8WYL5 1049 aa24.16■■□□□ 1.46
PTCD3-210ENST00000473829 CDHR2Q9BYE9 1310 aa24.15■■□□□ 1.46
PTCD3-210ENST00000473829 DDX46Q7L014 1031 aaKnown RBP24.15■■□□□ 1.46
PTCD3-210ENST00000473829 BCL2L13Q9BXK5 485 aa24.15■■□□□ 1.46
PTCD3-210ENST00000473829 FKBP4Q02790 459 aaKnown RBP eCLIP24.14■■□□□ 1.45
PTCD3-210ENST00000473829 GRAPQ13588 217 aa24.14■■□□□ 1.45
PTCD3-210ENST00000473829 GCKRQ14397 625 aa24.14■■□□□ 1.45
PTCD3-210ENST00000473829 LINS1Q8NG48 757 aa24.14■■□□□ 1.45
PTCD3-210ENST00000473829 GRAPLQ8TC17 118 aaPredicted RBP24.14■■□□□ 1.45
PTCD3-210ENST00000473829 BEND3Q5T5X7 828 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 231.7 ms