RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 KCNH5Q8NCM2 988 aa25.25■■□□□ 1.63
COL18A1-207ENST00000473212 TTC12Q9H892 705 aaPredicted RBP25.25■■□□□ 1.63
COL18A1-207ENST00000473212 RBM8AQ9Y5S9 174 aaKnown RBP25.25■■□□□ 1.63
COL18A1-207ENST00000473212 MYL6BP14649 208 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 NECTIN1Q15223 517 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 FAM173BQ6P4H8 233 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 MTMR6Q9Y217 621 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 A0A0D9SFI3 127 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 GRM8O00222 908 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 CHGBP05060 677 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 PDIA6Q15084 440 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 VPS53Q5VIR6 699 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 CCDC171Q6TFL3 1326 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 MAP7D2Q96T17 732 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 NDUFB9Q9Y6M9 179 aa25.24■■□□□ 1.63
COL18A1-207ENST00000473212 VPS37CA5D8V6 355 aaPredicted RBP25.23■■□□□ 1.63
COL18A1-207ENST00000473212 ALDH1L1O75891 902 aa25.23■■□□□ 1.63
COL18A1-207ENST00000473212 IGKV5-2P06315 115 aa25.23■■□□□ 1.63
COL18A1-207ENST00000473212 ZSWIM6Q9HCJ5 1215 aa25.23■■□□□ 1.63
COL18A1-207ENST00000473212 TPCN1Q9ULQ1 816 aa25.23■■□□□ 1.63
COL18A1-207ENST00000473212 EPHA10Q5JZY3 1008 aa25.23■■□□□ 1.63
COL18A1-207ENST00000473212 CREB3L3Q68CJ9 461 aa25.22■■□□□ 1.63
COL18A1-207ENST00000473212 PIBF1Q8WXW3 757 aa25.22■■□□□ 1.63
COL18A1-207ENST00000473212 CYP46A1Q9Y6A2 500 aa25.22■■□□□ 1.63
COL18A1-207ENST00000473212 FERMT3Q86UX7 667 aa25.22■■□□□ 1.63
COL18A1-207ENST00000473212 C17orf53Q8N3J3 647 aaPredicted RBP25.22■■□□□ 1.63
COL18A1-207ENST00000473212 HEG1Q9ULI3 1381 aa25.21■■□□□ 1.63
COL18A1-207ENST00000473212 KDM4AO75164 1064 aa25.21■■□□□ 1.63
COL18A1-207ENST00000473212 KCNJ4P48050 445 aa25.21■■□□□ 1.63
COL18A1-207ENST00000473212 PLCB2Q00722 1185 aa25.21■■□□□ 1.63
COL18A1-207ENST00000473212 AMOTQ4VCS5 1084 aa25.21■■□□□ 1.63
COL18A1-207ENST00000473212 EVI5LQ96CN4 794 aa25.21■■□□□ 1.63
COL18A1-207ENST00000473212 CHD2O14647 1828 aaKnown RBP25.21■■□□□ 1.63
COL18A1-207ENST00000473212 FUCA2Q9BTY2 467 aa25.21■■□□□ 1.63
COL18A1-207ENST00000473212 NOLC1Q14978 699 aaKnown RBP eCLIP25.2■■□□□ 1.62
COL18A1-207ENST00000473212 LINS1Q8NG48 757 aa25.2■■□□□ 1.62
COL18A1-207ENST00000473212 ZSCAN31Q96LW9 406 aaPredicted RBP25.2■■□□□ 1.62
COL18A1-207ENST00000473212 CHMP3Q9Y3E7 222 aa25.2■■□□□ 1.62
COL18A1-207ENST00000473212 ZC3H6P61129 1189 aaKnown RBP25.2■■□□□ 1.62
COL18A1-207ENST00000473212 ZNF589Q86UQ0 364 aaPredicted RBP25.2■■□□□ 1.62
COL18A1-207ENST00000473212 SH2B1Q9NRF2 756 aaPredicted RBP25.2■■□□□ 1.62
COL18A1-207ENST00000473212 ANKLE2Q86XL3 938 aa25.19■■□□□ 1.62
COL18A1-207ENST00000473212 GPATCH3Q96I76 525 aa25.19■■□□□ 1.62
COL18A1-207ENST00000473212 TM6SF1Q9BZW5 370 aa25.19■■□□□ 1.62
COL18A1-207ENST00000473212 G3BP1Q13283 466 aaKnown RBP eCLIP25.19■■□□□ 1.62
COL18A1-207ENST00000473212 KCNB2Q92953 911 aa25.18■■□□□ 1.62
COL18A1-207ENST00000473212 SLC27A2O14975 620 aa25.18■■□□□ 1.62
COL18A1-207ENST00000473212 RIC3Q7Z5B4 369 aa25.18■■□□□ 1.62
COL18A1-207ENST00000473212 ARID3AQ99856 593 aa25.18■■□□□ 1.62
COL18A1-207ENST00000473212 CHMP4AQ9BY43 222 aa25.18■■□□□ 1.62
COL18A1-207ENST00000473212 CDC37L1Q7L3B6 337 aa25.17■■□□□ 1.62
COL18A1-207ENST00000473212 MAP4K1Q92918 833 aa25.17■■□□□ 1.62
COL18A1-207ENST00000473212 ERC1Q8IUD2 1116 aa25.17■■□□□ 1.62
COL18A1-207ENST00000473212 PKNOX2Q96KN3 472 aa25.17■■□□□ 1.62
COL18A1-207ENST00000473212 FSD1Q9BTV5 496 aa25.17■■□□□ 1.62
COL18A1-207ENST00000473212 DDX21Q9NR30 783 aaKnown RBP eCLIP25.17■■□□□ 1.62
COL18A1-207ENST00000473212 ADGRL3Q9HAR2 1447 aa25.17■■□□□ 1.62
COL18A1-207ENST00000473212 AP5Z1O43299 807 aa25.16■■□□□ 1.62
COL18A1-207ENST00000473212 ZKSCAN1P17029 563 aaPredicted RBP25.16■■□□□ 1.62
COL18A1-207ENST00000473212 MYRIPQ8NFW9 859 aa25.16■■□□□ 1.62
COL18A1-207ENST00000473212 STK3Q13188 491 aa25.15■■□□□ 1.62
COL18A1-207ENST00000473212 XAGE3Q8WTP9 111 aa25.15■■□□□ 1.62
COL18A1-207ENST00000473212 MYD88Q99836 296 aa25.15■■□□□ 1.62
COL18A1-207ENST00000473212 RGPD5Q99666 1765 aa25.14■■□□□ 1.62
COL18A1-207ENST00000473212 NFATC2IPQ8NCF5 419 aa25.14■■□□□ 1.62
COL18A1-207ENST00000473212 COPS6Q7L5N1 327 aa25.14■■□□□ 1.61
COL18A1-207ENST00000473212 CCDC9Q9Y3X0 531 aaKnown RBP25.14■■□□□ 1.61
COL18A1-207ENST00000473212 LARP1BQ659C4 914 aaKnown RBP25.13■■□□□ 1.61
COL18A1-207ENST00000473212 ZNF790Q6PG37 636 aa25.13■■□□□ 1.61
COL18A1-207ENST00000473212 DDX17Q92841 729 aaKnown RBP25.13■■□□□ 1.61
COL18A1-207ENST00000473212 NEURL1BA8MQ27 555 aa25.13■■□□□ 1.61
COL18A1-207ENST00000473212 MTERF4Q7Z6M4 381 aaKnown RBP25.13■■□□□ 1.61
COL18A1-207ENST00000473212 TTC6Q86TZ1 520 aa25.13■■□□□ 1.61
COL18A1-207ENST00000473212 UTYO14607 1347 aa25.13■■□□□ 1.61
COL18A1-207ENST00000473212 NPHP4O75161 1426 aaPredicted RBP25.12■■□□□ 1.61
COL18A1-207ENST00000473212 COL15A1P39059 1388 aa25.12■■□□□ 1.61
COL18A1-207ENST00000473212 TSC1Q92574 1164 aa25.12■■□□□ 1.61
COL18A1-207ENST00000473212 USP16Q9Y5T5 823 aa25.11■■□□□ 1.61
COL18A1-207ENST00000473212 NCAPD2Q15021 1401 aa25.11■■□□□ 1.61
COL18A1-207ENST00000473212 CCDC129Q6ZRS4 1044 aa25.11■■□□□ 1.61
COL18A1-207ENST00000473212 ZNF496Q96IT1 587 aaPredicted RBP25.11■■□□□ 1.61
COL18A1-207ENST00000473212 PRIMPOLQ96LW4 560 aa25.11■■□□□ 1.61
COL18A1-207ENST00000473212 SPTLC3Q9NUV7 552 aa25.11■■□□□ 1.61
COL18A1-207ENST00000473212 DDX58O95786 925 aaKnown RBP25.1■■□□□ 1.61
COL18A1-207ENST00000473212 TOB2Q14106 344 aaPredicted RBP25.1■■□□□ 1.61
COL18A1-207ENST00000473212 GCKRQ14397 625 aa25.1■■□□□ 1.61
COL18A1-207ENST00000473212 CAMK4Q16566 473 aa25.1■■□□□ 1.61
COL18A1-207ENST00000473212 SEC62Q99442 399 aaKnown RBP25.1■■□□□ 1.61
COL18A1-207ENST00000473212 PHRF1Q9P1Y6 1649 aaKnown RBP25.1■■□□□ 1.61
COL18A1-207ENST00000473212 CCDC192P0DO97 292 aa25.1■■□□□ 1.61
COL18A1-207ENST00000473212 TFIP11Q9UBB9 837 aaKnown RBP25.1■■□□□ 1.61
COL18A1-207ENST00000473212 SIPA1L3O60292 1781 aaPredicted RBP25.09■■□□□ 1.61
COL18A1-207ENST00000473212 C5P01031 1676 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 LIG1P18858 919 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 KRT85P78386 507 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 SLFNL1Q499Z3 407 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 SPC24Q8NBT2 197 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 NLRP2Q9NX02 1062 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 DBNLQ9UJU6 430 aaKnown RBP25.09■■□□□ 1.61
COL18A1-207ENST00000473212 KDM6AO15550 1401 aaPredicted RBP25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms