RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	QPCT	Q16769	361 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	MFSD4B	Q5TF39	518 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	ANKRD13D	Q6ZTN6	518 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	MICALL1	Q8N3F8	863 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	CAPN10	Q9HC96	672 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	IP6K2	Q9UHH9	426 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	SCAMP3	O14828	347 aa	Known RBP	3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	MTA2	O94776	668 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	RAPGEF3	O95398	923 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	CCT2	P78371	535 aa	Known RBP	3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	FUT2	Q10981	343 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	CDC37	Q16543	378 aa	Predicted RBP	3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	VPS37A	Q8NEZ2	397 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	CCDC47	Q96A33	483 aa	Known RBP	3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	ERP27	Q96DN0	273 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	FAM161B	Q96MY7	647 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	RANBP17	Q9H2T7	1088 aa	Known RBP	3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	PPCS	Q9HAB8	311 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	CD248	Q9HCU0	757 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	FAM13B	Q9NYF5	915 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	CLIC5	Q9NZA1	410 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	HDAC9	Q9UKV0	1011 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	CENPJ	Q9HC77	1338 aa	Predicted RBP	3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	TMEM238L	A0A1B0GVL6	79 aa		3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	GPR37L1	O60883	481 aa		3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	DNAJC6	O75061	913 aa		3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	PSMC1	P62191	440 aa	Known RBP	3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	WNT2B	Q93097	391 aa		3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	APBA2	Q99767	749 aa		3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	GEMIN8	Q9NWZ8	242 aa	Known RBP	3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	TMEM63C	Q9P1W3	806 aa		3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	TFIP11	Q9UBB9	837 aa	Known RBP	3.97	□□□□□ -1.77
TTC3-214	ENST00000472398	PES1	O00541	588 aa	Known RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	COQ9	O75208	318 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	HSP90AA1	P07900	732 aa	Known RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	PEX19	P40855	299 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	SATB1	Q01826	763 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	FAM160A1	Q05DH4	1040 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	MTMR2	Q13614	643 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398		Q3C1V9	767 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	L1TD1	Q5T7N2	865 aa	Known RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	LMBRD2	Q68DH5	695 aa	Predicted RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	DESI1	Q6ICB0	168 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	CCSAP	Q6IQ19	270 aa	Predicted RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	ALKBH2	Q6NS38	261 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	ZCCHC8	Q6NZY4	707 aa	Known RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	THSD4	Q6ZMP0	1018 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	TAS1R3	Q7RTX0	852 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	CHPF	Q8IZ52	775 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	CHCHD4	Q8N4Q1	142 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	PAF1	Q8N7H5	531 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	CABLES1	Q8TDN4	633 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	HLA-C	Q95604	372 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	ITFG2	Q969R8	447 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	FAM126A	Q9BYI3	521 aa	Predicted RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	KANSL2	Q9H9L4	492 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	BIN2	Q9UBW5	565 aa	Predicted RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	ASAP1	Q9ULH1	1129 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	ATP1B4	Q9UN42	357 aa	Predicted RBP	3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	HPS5	Q9UPZ3	1129 aa		3.96	□□□□□ -1.77
TTC3-214	ENST00000472398	ERICH4	A6NGS2	130 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	TBX3	O15119	743 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	BPNT1	O95861	308 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	KCNA2	P16389	499 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	BCAM	P50895	628 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	EIF5	P55010	431 aa	Known RBP	3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	WASHC5	Q12768	1159 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	INO80D	Q53TQ3	878 aa	Predicted RBP	3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	C16orf87	Q6PH81	154 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	RELL1	Q8IUW5	271 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	OGFOD1	Q8N543	542 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	CHMP4C	Q96CF2	233 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	THAP11	Q96EK4	314 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	CEP89	Q96ST8	783 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	NELL2	Q99435	816 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	GML	Q99445	158 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	C22orf23	Q9BZE7	217 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	ARNT2	Q9HBZ2	717 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	KMT5A	Q9NQR1	393 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	ANAPC4	Q9UJX5	808 aa		3.96	□□□□□ -1.78
TTC3-214	ENST00000472398	TRIM64C	A6NLI5	447 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	GOLGA8CP	A6NN73	597 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	FANCC	Q00597	558 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	GUCA2A	Q02747	115 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	IFT88	Q13099	833 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	RAPGEF1	Q13905	1077 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	NFE2L2	Q16236	605 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	TMEM95	Q3KNT9	176 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	SLFNL1	Q499Z3	407 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	PGBD3	Q8N328	593 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	PDGFD	Q9GZP0	370 aa	Predicted RBP	3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	DNAJC25	Q9H1X3	360 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	YY1AP1	Q9H869	796 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	ANO2	Q9NQ90	1003 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	RNF19A	Q9NV58	838 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	ENPP3	O14638	875 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	NPHP1	O15259	732 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	SLC26A4	O43511	780 aa		3.95	□□□□□ -1.78
TTC3-214	ENST00000472398	WIPF1	O43516	503 aa		3.95	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms