RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 GJB2P29033 226 aa16.36■□□□□ 0.21
BRCA1-209ENST00000470026 FOXD4L6Q3SYB3 417 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-209ENST00000470026 CREB3L3Q68CJ9 461 aa16.36■□□□□ 0.21
BRCA1-209ENST00000470026 FOXD4L3Q6VB84 417 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-209ENST00000470026 RBM8AQ9Y5S9 174 aaKnown RBP16.36■□□□□ 0.21
BRCA1-209ENST00000470026 CCDC83Q8IWF9 413 aa16.36■□□□□ 0.21
BRCA1-209ENST00000470026 LARP6Q9BRS8 491 aaKnown RBP16.36■□□□□ 0.21
BRCA1-209ENST00000470026 FUCA2Q9BTY2 467 aa16.36■□□□□ 0.21
BRCA1-209ENST00000470026 RGPD5Q99666 1765 aa16.36■□□□□ 0.21
BRCA1-209ENST00000470026 NPHP4O75161 1426 aaPredicted RBP16.35■□□□□ 0.21
BRCA1-209ENST00000470026 ZKSCAN1P17029 563 aaPredicted RBP16.35■□□□□ 0.21
BRCA1-209ENST00000470026 G3BP1Q13283 466 aaKnown RBP eCLIP16.35■□□□□ 0.21
BRCA1-209ENST00000470026 CSPP1Q1MSJ5 1256 aa16.35■□□□□ 0.21
BRCA1-209ENST00000470026 COL15A1P39059 1388 aa16.35■□□□□ 0.21
BRCA1-209ENST00000470026 PLEKHG2Q9H7P9 1386 aa16.35■□□□□ 0.21
BRCA1-209ENST00000470026 ALS2Q96Q42 1657 aa16.35■□□□□ 0.21
BRCA1-209ENST00000470026 ERBB3P21860 1342 aa16.35■□□□□ 0.21
BRCA1-209ENST00000470026 NMIQ13287 307 aaPredicted RBP16.34■□□□□ 0.21
BRCA1-209ENST00000470026 ME3Q16798 604 aa16.34■□□□□ 0.21
BRCA1-209ENST00000470026 TSGA10IPQ3SY00 556 aa16.34■□□□□ 0.21
BRCA1-209ENST00000470026 LARP1Q6PKG0 1096 aaKnown RBP16.34■□□□□ 0.21
BRCA1-209ENST00000470026 FAM227BQ96M60 508 aa16.34■□□□□ 0.21
BRCA1-209ENST00000470026 KDM6AO15550 1401 aaPredicted RBP16.34■□□□□ 0.21
BRCA1-209ENST00000470026 NEURL1BA8MQ27 555 aa16.33■□□□□ 0.21
BRCA1-209ENST00000470026 SLC27A2O14975 620 aa16.33■□□□□ 0.21
BRCA1-209ENST00000470026 ZNF790Q6PG37 636 aa16.33■□□□□ 0.21
BRCA1-209ENST00000470026 PSMA5P28066 241 aa16.33■□□□□ 0.2
BRCA1-209ENST00000470026 XPCQ01831 940 aaPredicted RBP16.33■□□□□ 0.2
BRCA1-209ENST00000470026 LRP10Q7Z4F1 713 aa16.33■□□□□ 0.2
BRCA1-209ENST00000470026 TPCN1Q9ULQ1 816 aa16.33■□□□□ 0.2
BRCA1-209ENST00000470026 GCKRQ14397 625 aa16.32■□□□□ 0.2
BRCA1-209ENST00000470026 HSP90AA2PQ14568 343 aaPredicted RBP16.32■□□□□ 0.2
BRCA1-209ENST00000470026 CCDC8Q9H0W5 538 aaPredicted RBP16.32■□□□□ 0.2
BRCA1-209ENST00000470026 SLC52A2Q9HAB3 445 aa16.32■□□□□ 0.2
BRCA1-209ENST00000470026 TLR7Q9NYK1 1049 aaKnown RBP16.32■□□□□ 0.2
BRCA1-209ENST00000470026 NPHP3Q7Z494 1330 aa16.32■□□□□ 0.2
BRCA1-209ENST00000470026 A0A0D9SFI3 127 aa16.31■□□□□ 0.2
BRCA1-209ENST00000470026 METTL22Q9BUU2 404 aaPredicted RBP16.31■□□□□ 0.2
BRCA1-209ENST00000470026 RFX7Q2KHR2 1363 aa16.31■□□□□ 0.2
BRCA1-209ENST00000470026 FIBPO43427 364 aa16.31■□□□□ 0.2
BRCA1-209ENST00000470026 DNM1Q05193 864 aaKnown RBP16.31■□□□□ 0.2
BRCA1-209ENST00000470026 USPL1Q5W0Q7 1092 aa16.31■□□□□ 0.2
BRCA1-209ENST00000470026 COPRSQ9NQ92 184 aa16.31■□□□□ 0.2
BRCA1-209ENST00000470026 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.31■□□□□ 0.24e-6■■■■■ 27.4
BRCA1-209ENST00000470026 ADAMTSL3P82987 1691 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 ANKRD1Q15327 319 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 KRT28Q7Z3Y7 464 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 RIC3Q7Z5B4 369 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 HMG20BQ9P0W2 317 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 C1orf167Q5SNV9 1468 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 COL18A1P39060 1754 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 RFX5P48382 616 aaPredicted RBP16.3■□□□□ 0.2
BRCA1-209ENST00000470026 AIMP1Q12904 312 aaKnown RBP16.3■□□□□ 0.2
BRCA1-209ENST00000470026 EPHA10Q5JZY3 1008 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 RNF20Q5VTR2 975 aa16.3■□□□□ 0.2
BRCA1-209ENST00000470026 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.3■□□□□ 0.2
BRCA1-209ENST00000470026 ELP1O95163 1332 aa16.29■□□□□ 0.2
BRCA1-209ENST00000470026 RPS6KB1P23443 525 aa16.29■□□□□ 0.2
BRCA1-209ENST00000470026 NEXNQ0ZGT2 675 aa16.29■□□□□ 0.2
BRCA1-209ENST00000470026 RABL6Q3YEC7 729 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-209ENST00000470026 BOLA2Q9H3K6 86 aa16.29■□□□□ 0.2
BRCA1-209ENST00000470026 HCLS1P14317 486 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-209ENST00000470026 PHKG2P15735 406 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 ATP5JP18859 108 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 COL9A3Q14050 684 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-209ENST00000470026 NECAB1Q8N987 351 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 XAGE3Q8WTP9 111 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 FSD1Q9BTV5 496 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 R3HCC1Q9Y3T6 440 aaKnown RBP16.28■□□□□ 0.2
BRCA1-209ENST00000470026 PDCP20941 246 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 SLC39A6Q13433 755 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 TOB2Q14106 344 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-209ENST00000470026 BLOC1S2Q6QNY1 142 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 USP25Q9UHP3 1055 aa16.28■□□□□ 0.2
BRCA1-209ENST00000470026 KDM4AO75164 1064 aa16.27■□□□□ 0.2
BRCA1-209ENST00000470026 TAF5LO75529 589 aa16.27■□□□□ 0.2
BRCA1-209ENST00000470026 KCNJ4P48050 445 aa16.27■□□□□ 0.2
BRCA1-209ENST00000470026 COPS6Q7L5N1 327 aa16.27■□□□□ 0.2
BRCA1-209ENST00000470026 ZNF589Q86UQ0 364 aaPredicted RBP16.27■□□□□ 0.2
BRCA1-209ENST00000470026 GLI3P10071 1580 aa16.27■□□□□ 0.2
BRCA1-209ENST00000470026 MEGF6O75095 1541 aa16.27■□□□□ 0.19
BRCA1-209ENST00000470026 PKD1L3Q7Z443 1732 aa16.27■□□□□ 0.19
BRCA1-209ENST00000470026 KIAA2012Q0VF49 1180 aa16.27■□□□□ 0.19
BRCA1-209ENST00000470026 LARP1BQ659C4 914 aaKnown RBP16.27■□□□□ 0.19
BRCA1-209ENST00000470026 RAPGEF4Q8WZA2 1011 aa16.27■□□□□ 0.19
BRCA1-209ENST00000470026 SIL1Q9H173 461 aa16.27■□□□□ 0.19
BRCA1-209ENST00000470026 ADCY5O95622 1261 aa16.26■□□□□ 0.19
BRCA1-209ENST00000470026 PTMAP06454 111 aaKnown RBP16.26■□□□□ 0.19
BRCA1-209ENST00000470026 PTPN12Q05209 780 aaKnown RBP16.26■□□□□ 0.19
BRCA1-209ENST00000470026 TTC6Q86TZ1 520 aa16.26■□□□□ 0.19
BRCA1-209ENST00000470026 KLHDC4Q8TBB5 520 aa16.26■□□□□ 0.19
BRCA1-209ENST00000470026 DDX54Q8TDD1 881 aaKnown RBP16.26■□□□□ 0.19
BRCA1-209ENST00000470026 ZNF496Q96IT1 587 aaPredicted RBP16.26■□□□□ 0.19
BRCA1-209ENST00000470026 MYD88Q99836 296 aa16.26■□□□□ 0.19
BRCA1-209ENST00000470026 TAF6LQ9Y6J9 622 aa16.26■□□□□ 0.19
BRCA1-209ENST00000470026 ARFGEF2Q9Y6D5 1785 aa16.26■□□□□ 0.19
BRCA1-209ENST00000470026 VPS37CA5D8V6 355 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-209ENST00000470026 KRT85P78386 507 aa16.25■□□□□ 0.19
BRCA1-209ENST00000470026 GIMAP6Q6P9H5 292 aa16.25■□□□□ 0.19
BRCA1-209ENST00000470026 CDC37L1Q7L3B6 337 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms