RNA–Protein interactions for RNA: ENST00000468958.1

ABCF1-204, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 3

Gene ABCF1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-204ENST00000468958 WWC1Q8IX03 1113 aa16.3■□□□□ 0.2
ABCF1-204ENST00000468958 TSPYL6Q8N831 410 aa16.3■□□□□ 0.2
ABCF1-204ENST00000468958 TSR2Q969E8 191 aaKnown RBP16.3■□□□□ 0.2
ABCF1-204ENST00000468958 ZNF428Q96B54 188 aa16.3■□□□□ 0.2
ABCF1-204ENST00000468958 GPBP1L1Q9HC44 474 aaPredicted RBP16.3■□□□□ 0.2
ABCF1-204ENST00000468958 COL4A1P02462 1669 aa16.3■□□□□ 0.2
ABCF1-204ENST00000468958 SNED1Q8TER0 1413 aa16.29■□□□□ 0.2
ABCF1-204ENST00000468958 CCDC27Q2M243 656 aa16.29■□□□□ 0.2
ABCF1-204ENST00000468958 FAM9BQ8IZU0 186 aa16.29■□□□□ 0.2
ABCF1-204ENST00000468958 C7orf43Q8WVR3 580 aa16.29■□□□□ 0.2
ABCF1-204ENST00000468958 CRY2Q49AN0 593 aa16.28■□□□□ 0.2
ABCF1-204ENST00000468958 SYNE4Q8N205 404 aa16.28■□□□□ 0.2
ABCF1-204ENST00000468958 CNKSR1Q969H4 720 aa16.28■□□□□ 0.2
ABCF1-204ENST00000468958 NPR1P16066 1061 aa16.27■□□□□ 0.2
ABCF1-204ENST00000468958 NLRP10Q86W26 655 aa16.27■□□□□ 0.2
ABCF1-204ENST00000468958 NYXQ9GZU5 481 aa16.27■□□□□ 0.2
ABCF1-204ENST00000468958 PHAXQ9H814 394 aaKnown RBP16.27■□□□□ 0.2
ABCF1-204ENST00000468958 NMRK2Q9NPI5 230 aa16.27■□□□□ 0.2
ABCF1-204ENST00000468958 SALL2Q9Y467 1007 aaPredicted RBP16.27■□□□□ 0.2
ABCF1-204ENST00000468958 LMNB1P20700 586 aa16.26■□□□□ 0.19
ABCF1-204ENST00000468958 GTF2E1P29083 439 aaPredicted RBP16.26■□□□□ 0.19
ABCF1-204ENST00000468958 DBF4Q9UBU7 674 aaPredicted RBP16.26■□□□□ 0.19
ABCF1-204ENST00000468958 TCIRG1Q13488 830 aa16.25■□□□□ 0.19
ABCF1-204ENST00000468958 MIER1Q8N108 512 aa16.25■□□□□ 0.19
ABCF1-204ENST00000468958 SPINK5Q9NQ38 1064 aaPredicted RBP16.25■□□□□ 0.19
ABCF1-204ENST00000468958 CACNA1FO60840 1977 aa16.25■□□□□ 0.19
ABCF1-204ENST00000468958 WDR90Q96KV7 1748 aa16.25■□□□□ 0.19
ABCF1-204ENST00000468958 COL4A5P29400 1685 aa16.24■□□□□ 0.19
ABCF1-204ENST00000468958 PARP10Q53GL7 1025 aa16.24■□□□□ 0.19
ABCF1-204ENST00000468958 PLBD2Q8NHP8 589 aa16.24■□□□□ 0.19
ABCF1-204ENST00000468958 ISCA1Q9BUE6 129 aa16.24■□□□□ 0.19
ABCF1-204ENST00000468958 LTBP3Q9NS15 1303 aa16.23■□□□□ 0.19
ABCF1-204ENST00000468958 LRRC37AA6NMS7 1700 aa16.23■□□□□ 0.19
ABCF1-204ENST00000468958 TCERG1O14776 1098 aaKnown RBP16.23■□□□□ 0.19
ABCF1-204ENST00000468958 MAPK8IP2Q13387 824 aaPredicted RBP16.23■□□□□ 0.19
ABCF1-204ENST00000468958 SLC10A5Q5PT55 438 aa16.23■□□□□ 0.19
ABCF1-204ENST00000468958 ANKRD13DQ6ZTN6 518 aa16.23■□□□□ 0.19
ABCF1-204ENST00000468958 PPP1R42Q7Z4L9 355 aa16.23■□□□□ 0.19
ABCF1-204ENST00000468958 UTP14AQ9BVJ6 771 aaKnown RBP16.23■□□□□ 0.19
ABCF1-204ENST00000468958 RNF216Q9NWF9 866 aaPredicted RBP16.23■□□□□ 0.19
ABCF1-204ENST00000468958 HYPKQ9NX55 129 aa16.23■□□□□ 0.19
ABCF1-204ENST00000468958 ATP5J2-PTCD1G3V325 749 aa16.22■□□□□ 0.19
ABCF1-204ENST00000468958 HOXA10P31260 410 aaPredicted RBP16.22■□□□□ 0.19
ABCF1-204ENST00000468958 HSP90AB3PQ58FF7 597 aa16.22■□□□□ 0.19
ABCF1-204ENST00000468958 IL16Q14005 1332 aa16.21■□□□□ 0.19
ABCF1-204ENST00000468958 FANCIQ9NVI1 1328 aa16.21■□□□□ 0.19
ABCF1-204ENST00000468958 HCLS1P14317 486 aaPredicted RBP16.21■□□□□ 0.19
ABCF1-204ENST00000468958 TAOK3Q9H2K8 898 aa16.21■□□□□ 0.19
ABCF1-204ENST00000468958 MYH3P11055 1940 aa16.2■□□□□ 0.18
ABCF1-204ENST00000468958 ALDH1B1P30837 517 aa16.2■□□□□ 0.18
ABCF1-204ENST00000468958 CCDC93Q567U6 631 aa16.2■□□□□ 0.18
ABCF1-204ENST00000468958 G2E3Q7L622 706 aa16.2■□□□□ 0.18
ABCF1-204ENST00000468958 RRAGCQ9HB90 399 aa16.2■□□□□ 0.18
ABCF1-204ENST00000468958 ZC3H4Q9UPT8 1303 aaKnown RBP16.19■□□□□ 0.18
ABCF1-204ENST00000468958 SPEF2Q9C093 1822 aa16.19■□□□□ 0.18
ABCF1-204ENST00000468958 TWISTNBQ3B726 338 aaPredicted RBP16.19■□□□□ 0.18
ABCF1-204ENST00000468958 RPGRQ92834 1020 aaKnown RBP16.19■□□□□ 0.18
ABCF1-204ENST00000468958 TRMT112Q9UI30 125 aaKnown RBP16.19■□□□□ 0.18
ABCF1-204ENST00000468958 LTBP1Q14766 1721 aa16.19■□□□□ 0.18
ABCF1-204ENST00000468958 ABCC4O15439 1325 aa16.19■□□□□ 0.18
ABCF1-204ENST00000468958 DUOX1Q9NRD9 1551 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 GLTPD2A6NH11 291 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 POTECB2RU33 542 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 FKBP4Q02790 459 aaKnown RBP eCLIP16.18■□□□□ 0.18
ABCF1-204ENST00000468958 CCDC30Q5VVM6 783 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 FAM89AQ96GI7 184 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 NLRP3Q96P20 1036 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 CRAMP1Q96RY5 1269 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 ZNF277Q9NRM2 450 aaPredicted RBP16.18■□□□□ 0.18
ABCF1-204ENST00000468958 RNF123Q5XPI4 1314 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 SH3TC1Q8TE82 1336 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 ZNF521Q96K83 1311 aa16.18■□□□□ 0.18
ABCF1-204ENST00000468958 RTL5Q5HYW3 569 aaPredicted RBP16.17■□□□□ 0.18
ABCF1-204ENST00000468958 SOGA3Q5TF21 947 aa16.17■□□□□ 0.18
ABCF1-204ENST00000468958 RIC3Q7Z5B4 369 aa16.17■□□□□ 0.18
ABCF1-204ENST00000468958 WDR63Q8IWG1 891 aa16.17■□□□□ 0.18
ABCF1-204ENST00000468958 RBM17Q96I25 401 aaKnown RBP16.17■□□□□ 0.18
ABCF1-204ENST00000468958 MYD88Q99836 296 aa16.17■□□□□ 0.18
ABCF1-204ENST00000468958 CHMP4AQ9BY43 222 aa16.17■□□□□ 0.18
ABCF1-204ENST00000468958 KDM2BQ8NHM5 1336 aa16.17■□□□□ 0.18
ABCF1-204ENST00000468958 PPEF1O14829 653 aaPredicted RBP16.16■□□□□ 0.18
ABCF1-204ENST00000468958 EXOSC9Q06265 439 aaKnown RBP16.16■□□□□ 0.18
ABCF1-204ENST00000468958 TRIM28Q13263 835 aaKnown RBP16.16■□□□□ 0.18
ABCF1-204ENST00000468958 SCN4AP35499 1836 aa16.16■□□□□ 0.18
ABCF1-204ENST00000468958 VAMP4O75379 141 aa16.15■□□□□ 0.18
ABCF1-204ENST00000468958 GOLGA2Q08379 1002 aa16.15■□□□□ 0.18
ABCF1-204ENST00000468958 JARID2Q92833 1246 aaPredicted RBP16.15■□□□□ 0.18
ABCF1-204ENST00000468958 TOMM70O94826 608 aa16.14■□□□□ 0.17
ABCF1-204ENST00000468958 DDNO94850 711 aaPredicted RBP16.14■□□□□ 0.17
ABCF1-204ENST00000468958 IGKV5-2P06315 115 aa16.14■□□□□ 0.17
ABCF1-204ENST00000468958 RTKN2Q8IZC4 609 aa16.14■□□□□ 0.17
ABCF1-204ENST00000468958 METTL22Q9BUU2 404 aaPredicted RBP16.14■□□□□ 0.17
ABCF1-204ENST00000468958 MAP3K2Q9Y2U5 619 aa16.14■□□□□ 0.17
ABCF1-204ENST00000468958 ZNF541Q9H0D2 1346 aa16.14■□□□□ 0.17
ABCF1-204ENST00000468958 PI4KAP2A4QPH2 592 aa16.13■□□□□ 0.17
ABCF1-204ENST00000468958 IARSP41252 1262 aaKnown RBP16.13■□□□□ 0.17
ABCF1-204ENST00000468958 PI4KAP1Q8N8J0 262 aa16.13■□□□□ 0.17
ABCF1-204ENST00000468958 PSMD1Q99460 953 aa16.13■□□□□ 0.17
ABCF1-204ENST00000468958 ADAMTSL1Q8N6G6 1762 aa16.13■□□□□ 0.17
ABCF1-204ENST00000468958 SLC4A2P04920 1241 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms