RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 SAPCD2Q86UD0 394 aa9.18□□□□□ -0.94
CLDN4-204ENST00000466411 PNMA8AQ86V59 439 aaPredicted RBP9.18□□□□□ -0.94
CLDN4-204ENST00000466411 C2CD5Q86YS7 1000 aa9.18□□□□□ -0.94
CLDN4-204ENST00000466411 CARMIL3Q8ND23 1372 aa9.18□□□□□ -0.94
CLDN4-204ENST00000466411 ZNF541Q9H0D2 1346 aa9.18□□□□□ -0.94
CLDN4-204ENST00000466411 TRIOBPQ9H2D6 2365 aa9.17□□□□□ -0.94
CLDN4-204ENST00000466411 CACNA1SQ13698 1873 aa9.17□□□□□ -0.94
CLDN4-204ENST00000466411 PITPNM2Q9BZ72 1349 aa9.17□□□□□ -0.94
CLDN4-204ENST00000466411 WDR43Q15061 677 aaKnown RBP eCLIP9.17□□□□□ -0.94
CLDN4-204ENST00000466411 HHIPL1Q96JK4 782 aa9.17□□□□□ -0.94
CLDN4-204ENST00000466411 EYA1Q99502 592 aa9.17□□□□□ -0.94
CLDN4-204ENST00000466411 TAOK3Q9H2K8 898 aa9.17□□□□□ -0.94
CLDN4-204ENST00000466411 H0YIN7 160 aa9.16□□□□□ -0.94
CLDN4-204ENST00000466411 TRAF5O00463 557 aa9.16□□□□□ -0.94
CLDN4-204ENST00000466411 U2SURPO15042 1029 aaKnown RBP9.16□□□□□ -0.94
CLDN4-204ENST00000466411 SERPINB2P05120 415 aa9.16□□□□□ -0.94
CLDN4-204ENST00000466411 CRKLP46109 303 aaKnown RBP9.16□□□□□ -0.94
CLDN4-204ENST00000466411 PLEKHO1Q53GL0 409 aaPredicted RBP9.16□□□□□ -0.94
CLDN4-204ENST00000466411 INTS5Q6P9B9 1019 aaKnown RBP9.16□□□□□ -0.94
CLDN4-204ENST00000466411 SLC17A8Q8NDX2 589 aa9.16□□□□□ -0.94
CLDN4-204ENST00000466411 BCL2L12Q9HB09 334 aa9.16□□□□□ -0.94
CLDN4-204ENST00000466411 HPS5Q9UPZ3 1129 aa9.16□□□□□ -0.94
CLDN4-204ENST00000466411 RNF123Q5XPI4 1314 aa9.15□□□□□ -0.94
CLDN4-204ENST00000466411 COL11A2P13942 1736 aaPredicted RBP9.15□□□□□ -0.94
CLDN4-204ENST00000466411 CNGB1Q14028 1251 aaPredicted RBP9.15□□□□□ -0.94
CLDN4-204ENST00000466411 USPL1Q5W0Q7 1092 aa9.15□□□□□ -0.94
CLDN4-204ENST00000466411 SULT6B1Q6IMI4 303 aa9.15□□□□□ -0.94
CLDN4-204ENST00000466411 GAS2L2Q8NHY3 880 aa9.15□□□□□ -0.94
CLDN4-204ENST00000466411 C7orf43Q8WVR3 580 aa9.15□□□□□ -0.94
CLDN4-204ENST00000466411 MAPK8IP3Q9UPT6 1336 aa9.14□□□□□ -0.95
CLDN4-204ENST00000466411 FZD9O00144 591 aa9.14□□□□□ -0.95
CLDN4-204ENST00000466411 U2AF1L5P0DN76 240 aaPredicted RBP9.14□□□□□ -0.95
CLDN4-204ENST00000466411 PHKG2P15735 406 aa9.14□□□□□ -0.95
CLDN4-204ENST00000466411 U2AF1Q01081 240 aaKnown RBP eCLIP9.14□□□□□ -0.95
CLDN4-204ENST00000466411 C1orf141Q5JVX7 400 aa9.14□□□□□ -0.95
CLDN4-204ENST00000466411 IFNL2Q8IZJ0 200 aa9.14□□□□□ -0.95
CLDN4-204ENST00000466411 MS4A3Q96HJ5 214 aa9.14□□□□□ -0.95
CLDN4-204ENST00000466411 RYDENQ9NUL5 291 aaKnown RBP9.14□□□□□ -0.95
CLDN4-204ENST00000466411 SCN11AQ9UI33 1791 aa9.14□□□□□ -0.95
CLDN4-204ENST00000466411 CCER2I3L3R5 266 aa9.13□□□□□ -0.95
CLDN4-204ENST00000466411 DIEXFQ68CQ4 756 aaKnown RBP9.13□□□□□ -0.95
CLDN4-204ENST00000466411 MFRPQ9BY79 579 aa9.13□□□□□ -0.95
CLDN4-204ENST00000466411 SAGE1Q9NXZ1 904 aa9.13□□□□□ -0.95
CLDN4-204ENST00000466411 TRPC6Q9Y210 931 aa9.13□□□□□ -0.95
CLDN4-204ENST00000466411 TJP1Q07157 1748 aa9.13□□□□□ -0.95
CLDN4-204ENST00000466411 BRCA2P51587 3418 aa9.12□□□□□ -0.95
CLDN4-204ENST00000466411 ARFGEF2Q9Y6D5 1785 aa9.12□□□□□ -0.95
CLDN4-204ENST00000466411 LMOD3Q0VAK6 560 aa9.12□□□□□ -0.95
CLDN4-204ENST00000466411 CTU1Q7Z7A3 348 aaKnown RBP9.12□□□□□ -0.95
CLDN4-204ENST00000466411 NGEFQ8N5V2 710 aa9.12□□□□□ -0.95
CLDN4-204ENST00000466411 COLQQ9Y215 455 aaPredicted RBP9.12□□□□□ -0.95
CLDN4-204ENST00000466411 KIAA0100Q14667 2235 aaKnown RBP9.12□□□□□ -0.95
CLDN4-204ENST00000466411 RANBP2P49792 3224 aaKnown RBP9.11□□□□□ -0.95
CLDN4-204ENST00000466411 FAM155AB1AL88 458 aaPredicted RBP9.11□□□□□ -0.95
CLDN4-204ENST00000466411 ERVV-2B6SEH9 535 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 HTATSF1O43719 755 aaKnown RBP9.11□□□□□ -0.95
CLDN4-204ENST00000466411 NOGQ13253 232 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 AKAP4Q5JQC9 854 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 GPC2Q8N158 579 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 EFCAB3Q8N7B9 438 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 ZNF622Q969S3 477 aaKnown RBP eCLIP9.11□□□□□ -0.95
CLDN4-204ENST00000466411 BRIP1Q9BX63 1249 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 RSPH6AQ9H0K4 717 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 MRS2Q9HD23 443 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 NARFQ9UHQ1 456 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 AKAP11Q9UKA4 1901 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 HTTP42858 3142 aa9.11□□□□□ -0.95
CLDN4-204ENST00000466411 SOS1Q07889 1333 aaPredicted RBP9.1□□□□□ -0.95
CLDN4-204ENST00000466411 CEP290O15078 2479 aa9.1□□□□□ -0.95
CLDN4-204ENST00000466411 CENPFP49454 3210 aa9.1□□□□□ -0.95
CLDN4-204ENST00000466411 ZPR1O75312 459 aa9.1□□□□□ -0.95
CLDN4-204ENST00000466411 EPS15P42566 896 aa9.1□□□□□ -0.95
CLDN4-204ENST00000466411 SCNN1DP51172 638 aa9.1□□□□□ -0.95
CLDN4-204ENST00000466411 ZNF530Q6P9A1 599 aaPredicted RBP9.1□□□□□ -0.95
CLDN4-204ENST00000466411 RNF186Q9NXI6 227 aa9.1□□□□□ -0.95
CLDN4-204ENST00000466411 PDZRN3Q9UPQ7 1066 aa9.1□□□□□ -0.95
CLDN4-204ENST00000466411 DLG5Q8TDM6 1919 aa9.09□□□□□ -0.95
CLDN4-204ENST00000466411 MRC1P22897 1456 aa9.09□□□□□ -0.95
CLDN4-204ENST00000466411 GNAT3A8MTJ3 354 aa9.09□□□□□ -0.95
CLDN4-204ENST00000466411 HMOX1P09601 288 aa9.09□□□□□ -0.95
CLDN4-204ENST00000466411 PRKAR2BP31323 418 aa9.09□□□□□ -0.95
CLDN4-204ENST00000466411 PRPF40BQ6NWY9 871 aaKnown RBP9.09□□□□□ -0.95
CLDN4-204ENST00000466411 AEBP1Q8IUX7 1158 aa9.09□□□□□ -0.95
CLDN4-204ENST00000466411 RTF1Q92541 710 aaKnown RBP9.09□□□□□ -0.95
CLDN4-204ENST00000466411 RUNDC1Q96C34 613 aa9.09□□□□□ -0.95
CLDN4-204ENST00000466411 SNED1Q8TER0 1413 aa9.08□□□□□ -0.96
CLDN4-204ENST00000466411 COL4A5P29400 1685 aa9.08□□□□□ -0.96
CLDN4-204ENST00000466411 PTCD1O75127 700 aaKnown RBP9.08□□□□□ -0.96
CLDN4-204ENST00000466411 CELF2O95319 508 aaKnown RBP9.08□□□□□ -0.96
CLDN4-204ENST00000466411 SRGNP10124 158 aa9.08□□□□□ -0.96
CLDN4-204ENST00000466411 CALD1Q05682 793 aaKnown RBP9.08□□□□□ -0.96
CLDN4-204ENST00000466411 SOGA3Q5TF21 947 aa9.08□□□□□ -0.96
CLDN4-204ENST00000466411 USP50Q70EL3 339 aaPredicted RBP9.08□□□□□ -0.96
CLDN4-204ENST00000466411 CNKSR1Q969H4 720 aa9.08□□□□□ -0.96
CLDN4-204ENST00000466411 OTUD5Q96G74 571 aa9.08□□□□□ -0.96
CLDN4-204ENST00000466411 ZNF277Q9NRM2 450 aaPredicted RBP9.08□□□□□ -0.96
CLDN4-204ENST00000466411 PGAP2Q9UHJ9 254 aa9.08□□□□□ -0.96
CLDN4-204ENST00000466411 SIPA1L3O60292 1781 aaPredicted RBP9.08□□□□□ -0.96
CLDN4-204ENST00000466411 TRPA1O75762 1119 aa9.07□□□□□ -0.96
CLDN4-204ENST00000466411 PDE6BP35913 854 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms