RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 KIF7Q2M1P5 1343 aa7.56□□□□□ -1.2
VPS41-211ENST00000466017 SETD1AO15047 1707 aaKnown RBP7.56□□□□□ -1.2
VPS41-211ENST00000466017 DIP2AQ14689 1571 aa7.56□□□□□ -1.2
VPS41-211ENST00000466017 DHX9Q08211 1270 aaKnown RBP7.56□□□□□ -1.2
VPS41-211ENST00000466017 SCARF1Q14162 830 aa7.56□□□□□ -1.2
VPS41-211ENST00000466017 FNBP4Q8N3X1 1017 aaPredicted RBP7.56□□□□□ -1.2
VPS41-211ENST00000466017 OSBPL3Q9H4L5 887 aa7.56□□□□□ -1.2
VPS41-211ENST00000466017 ALG2Q9H553 416 aa7.56□□□□□ -1.2
VPS41-211ENST00000466017 ASXL1Q8IXJ9 1541 aa7.56□□□□□ -1.2
VPS41-211ENST00000466017 METP08581 1390 aa7.56□□□□□ -1.2
VPS41-211ENST00000466017 POLR1AO95602 1720 aaPredicted RBP7.55□□□□□ -1.2
VPS41-211ENST00000466017 SPINT1O43278 529 aa7.55□□□□□ -1.2
VPS41-211ENST00000466017 ERVK-9P63128 1117 aa7.55□□□□□ -1.2
VPS41-211ENST00000466017 DDX10Q13206 875 aaKnown RBP7.55□□□□□ -1.2
VPS41-211ENST00000466017 SEPT12Q8IYM1 358 aa7.55□□□□□ -1.2
VPS41-211ENST00000466017 TSEN34Q9BSV6 310 aaKnown RBP7.55□□□□□ -1.2
VPS41-211ENST00000466017 APBB1O00213 710 aa7.54□□□□□ -1.2
VPS41-211ENST00000466017 ADH1AP07327 375 aa7.54□□□□□ -1.2
VPS41-211ENST00000466017 PTGIRP43119 386 aa7.54□□□□□ -1.2
VPS41-211ENST00000466017 FLIIQ13045 1269 aa7.54□□□□□ -1.2
VPS41-211ENST00000466017 FOXD4L5Q5VV16 416 aaPredicted RBP7.54□□□□□ -1.2
VPS41-211ENST00000466017 KIFC2Q96AC6 838 aa7.54□□□□□ -1.2
VPS41-211ENST00000466017 EVC2Q86UK5 1308 aa7.53□□□□□ -1.2
VPS41-211ENST00000466017 NPHP4O75161 1426 aaPredicted RBP7.53□□□□□ -1.2
VPS41-211ENST00000466017 KNDC1Q76NI1 1749 aa7.53□□□□□ -1.2
VPS41-211ENST00000466017 TRAK2O60296 914 aa7.53□□□□□ -1.2
VPS41-211ENST00000466017 KCNA6P17658 529 aa7.53□□□□□ -1.2
VPS41-211ENST00000466017 TREML4Q6UXN2 200 aa7.53□□□□□ -1.2
VPS41-211ENST00000466017 AMOTL2Q9Y2J4 779 aa7.53□□□□□ -1.2
VPS41-211ENST00000466017 TTLL8A6PVC2 850 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 TERTO14746 1132 aaKnown RBP7.52□□□□□ -1.21
VPS41-211ENST00000466017 CC2D2BQ6DHV5 1058 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 PRAM1Q96QH2 718 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 SLC26A8Q96RN1 970 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 PRM3Q9NNZ6 103 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 RAB6BQ9NRW1 208 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 POGKQ9P215 609 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 STK26Q9P289 416 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 ARHGEF28Q8N1W1 1705 aaKnown RBP7.52□□□□□ -1.21
VPS41-211ENST00000466017 CPS1P31327 1500 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 PTCH1Q13635 1447 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 PTPRUQ92729 1446 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 ERBB4Q15303 1308 aa7.52□□□□□ -1.21
VPS41-211ENST00000466017 DISP3Q9P2K9 1392 aa7.51□□□□□ -1.21
VPS41-211ENST00000466017 NINLQ9Y2I6 1382 aa7.51□□□□□ -1.21
VPS41-211ENST00000466017 A0A1W2PRU2 124 aa7.51□□□□□ -1.21
VPS41-211ENST00000466017 WASHC4Q2M389 1173 aa7.51□□□□□ -1.21
VPS41-211ENST00000466017 RNF217Q8TC41 542 aa7.51□□□□□ -1.21
VPS41-211ENST00000466017 NCOA3Q9Y6Q9 1424 aa7.51□□□□□ -1.21
VPS41-211ENST00000466017 ATAD2Q6PL18 1390 aa7.5□□□□□ -1.21
VPS41-211ENST00000466017 WASLO00401 505 aaPredicted RBP7.5□□□□□ -1.21
VPS41-211ENST00000466017 MAN1A2O60476 641 aa7.5□□□□□ -1.21
VPS41-211ENST00000466017 MCCD1P59942 119 aaPredicted RBP7.5□□□□□ -1.21
VPS41-211ENST00000466017 SEMA3FQ13275 785 aa7.5□□□□□ -1.21
VPS41-211ENST00000466017 HDGFL1Q5TGJ6 251 aa7.5□□□□□ -1.21
VPS41-211ENST00000466017 WAPLQ7Z5K2 1190 aa7.5□□□□□ -1.21
VPS41-211ENST00000466017 RNF135Q8IUD6 432 aa7.5□□□□□ -1.21
VPS41-211ENST00000466017 UCN2Q96RP3 112 aa7.5□□□□□ -1.21
VPS41-211ENST00000466017 NXF1Q9UBU9 619 aaKnown RBP7.5□□□□□ -1.21
VPS41-211ENST00000466017 ZNF330Q9Y3S2 320 aaPredicted RBP7.5□□□□□ -1.21
VPS41-211ENST00000466017 LMTK3Q96Q04 1460 aa7.49□□□□□ -1.21
VPS41-211ENST00000466017 KTN1Q86UP2 1357 aaKnown RBP7.49□□□□□ -1.21
VPS41-211ENST00000466017 NPC1L1Q9UHC9 1359 aa7.49□□□□□ -1.21
VPS41-211ENST00000466017 ATP5J2-PTCD1G3V325 749 aa7.49□□□□□ -1.21
VPS41-211ENST00000466017 CCER2I3L3R5 266 aa7.49□□□□□ -1.21
VPS41-211ENST00000466017 ANP32CO43423 234 aa7.49□□□□□ -1.21
VPS41-211ENST00000466017 UPP2O95045 317 aa7.49□□□□□ -1.21
VPS41-211ENST00000466017 RNF20Q5VTR2 975 aa7.49□□□□□ -1.21
VPS41-211ENST00000466017 POLMQ9NP87 494 aaPredicted RBP7.49□□□□□ -1.21
VPS41-211ENST00000466017 CHD2O14647 1828 aaKnown RBP7.49□□□□□ -1.21
VPS41-211ENST00000466017 ROBO2Q9HCK4 1378 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 SENP3-EIF4A1A0A087X0R7 540 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 RAD21O60216 631 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 WFS1O76024 890 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 IL2RAP01589 272 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 SLFNL1Q499Z3 407 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 OXLD1Q5BKU9 147 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 DEPDC4Q8N2C3 294 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 PLPP7Q8NBV4 271 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 CDK19Q9BWU1 502 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 PANK3Q9H999 370 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 ARHGEF10LQ9HCE6 1279 aa7.48□□□□□ -1.21
VPS41-211ENST00000466017 QRICH2Q9H0J4 1663 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 PLEKHH1Q9ULM0 1364 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 XRN1Q8IZH2 1706 aaKnown RBP7.47□□□□□ -1.21
VPS41-211ENST00000466017 MEN1O00255 615 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 PPFIA3O75145 1194 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 RHOQP17081 205 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 PTSQ03393 145 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 RALBP1Q15311 655 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 TBC1D9Q6ZT07 1266 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 PRICKLE2Q7Z3G6 844 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 PROSER2Q86WR7 435 aaPredicted RBP7.47□□□□□ -1.21
VPS41-211ENST00000466017 GPR161Q8N6U8 529 aaKnown RBP7.47□□□□□ -1.21
VPS41-211ENST00000466017 PRKRIP1Q9H875 184 aaPredicted RBP7.47□□□□□ -1.21
VPS41-211ENST00000466017 DOLKQ9UPQ8 538 aa7.47□□□□□ -1.21
VPS41-211ENST00000466017 ADGRB2O60241 1585 aa7.46□□□□□ -1.21
VPS41-211ENST00000466017 H3BM21 787 aa7.46□□□□□ -1.22
VPS41-211ENST00000466017 HSPA2P54652 639 aa7.46□□□□□ -1.22
VPS41-211ENST00000466017 SLC12A5Q9H2X9 1139 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 487.1 ms