RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 PDE6BP35913 854 aa14.93□□□□□ -0.02
CUX1-207ENST00000465461 FKBP5Q13451 457 aaPredicted RBP14.93□□□□□ -0.02
CUX1-207ENST00000465461 PARP10Q53GL7 1025 aa14.93□□□□□ -0.02
CUX1-207ENST00000465461 C3orf67Q6ZVT6 689 aa14.93□□□□□ -0.02
CUX1-207ENST00000465461 PPP1R42Q7Z4L9 355 aa14.93□□□□□ -0.02
CUX1-207ENST00000465461 MRPL50Q8N5N7 158 aaKnown RBP14.93□□□□□ -0.02
CUX1-207ENST00000465461 SSH1Q8WYL5 1049 aa14.93□□□□□ -0.02
CUX1-207ENST00000465461 ZNF622Q969S3 477 aaKnown RBP eCLIP14.93□□□□□ -0.026e-8■■□□□ 12.3
CUX1-207ENST00000465461 METTL22Q9BUU2 404 aaPredicted RBP14.93□□□□□ -0.02
CUX1-207ENST00000465461 NYXQ9GZU5 481 aa14.93□□□□□ -0.02
CUX1-207ENST00000465461 PIM2Q9P1W9 311 aa14.93□□□□□ -0.02
CUX1-207ENST00000465461 F6X3S4 739 aa14.92□□□□□ -0.02
CUX1-207ENST00000465461 TRMT112Q9UI30 125 aaKnown RBP14.92□□□□□ -0.02
CUX1-207ENST00000465461 TNRC6CQ9HCJ0 1690 aaKnown RBP14.92□□□□□ -0.02
CUX1-207ENST00000465461 COL11A2P13942 1736 aaPredicted RBP14.92□□□□□ -0.02
CUX1-207ENST00000465461 HCLS1P14317 486 aaPredicted RBP14.91□□□□□ -0.02
CUX1-207ENST00000465461 FAM89AQ96GI7 184 aa14.91□□□□□ -0.02
CUX1-207ENST00000465461 ZNF219Q9P2Y4 722 aaPredicted RBP14.91□□□□□ -0.02
CUX1-207ENST00000465461 BRCA1P38398 1863 aaKnown RBP14.91□□□□□ -0.02
CUX1-207ENST00000465461 ZBED9Q6R2W3 1325 aa14.91□□□□□ -0.02
CUX1-207ENST00000465461 IGKV5-2P06315 115 aa14.9□□□□□ -0.02
CUX1-207ENST00000465461 SRGNP10124 158 aa14.9□□□□□ -0.02
CUX1-207ENST00000465461 CWF19L2Q2TBE0 894 aaKnown RBP14.9□□□□□ -0.02
CUX1-207ENST00000465461 DALRD3Q5D0E6 543 aaKnown RBP14.9□□□□□ -0.02
CUX1-207ENST00000465461 DNAAF4Q8WXU2 420 aa14.89□□□□□ -0.03
CUX1-207ENST00000465461 SH3TC1Q8TE82 1336 aa14.89□□□□□ -0.03
CUX1-207ENST00000465461 IBTKQ9P2D0 1353 aaPredicted RBP14.88□□□□□ -0.03
CUX1-207ENST00000465461 TRIM28Q13263 835 aaKnown RBP14.88□□□□□ -0.03
CUX1-207ENST00000465461 SLC10A5Q5PT55 438 aa14.88□□□□□ -0.03
CUX1-207ENST00000465461 TTLL6Q8N841 843 aa14.88□□□□□ -0.03
CUX1-207ENST00000465461 MASTLQ96GX5 879 aa14.88□□□□□ -0.03
CUX1-207ENST00000465461 SMC4Q9NTJ3 1288 aa14.88□□□□□ -0.03
CUX1-207ENST00000465461 DLEC1Q9Y238 1755 aa14.88□□□□□ -0.03
CUX1-207ENST00000465461 CACNA1FO60840 1977 aa14.87□□□□□ -0.03
CUX1-207ENST00000465461 KLRG2A4D1S0 409 aaPredicted RBP14.87□□□□□ -0.03
CUX1-207ENST00000465461 NEURL1BA8MQ27 555 aa14.87□□□□□ -0.03
CUX1-207ENST00000465461 GRIN3BO60391 1043 aa14.87□□□□□ -0.03
CUX1-207ENST00000465461 NEXNQ0ZGT2 675 aa14.87□□□□□ -0.03
CUX1-207ENST00000465461 SLC4A10Q6U841 1118 aa14.87□□□□□ -0.03
CUX1-207ENST00000465461 ARHGAP27Q6ZUM4 889 aa14.87□□□□□ -0.03
CUX1-207ENST00000465461 SLC51AQ86UW1 340 aa14.87□□□□□ -0.03
CUX1-207ENST00000465461 CCDC191Q8NCU4 936 aa14.87□□□□□ -0.03
CUX1-207ENST00000465461 YTHDC1Q96MU7 727 aaKnown RBP14.87□□□□□ -0.03
CUX1-207ENST00000465461 CWC25Q9NXE8 425 aaPredicted RBP14.87□□□□□ -0.03
CUX1-207ENST00000465461 CACNA1SQ13698 1873 aa14.86□□□□□ -0.03
CUX1-207ENST00000465461 C21orf2O43822 256 aa14.86□□□□□ -0.03
CUX1-207ENST00000465461 NPR1P16066 1061 aa14.86□□□□□ -0.03
CUX1-207ENST00000465461 RARSP54136 660 aaKnown RBP14.86□□□□□ -0.03
CUX1-207ENST00000465461 ALDH1L2Q3SY69 923 aa14.86□□□□□ -0.03
CUX1-207ENST00000465461 STYK1Q6J9G0 422 aa14.86□□□□□ -0.03
CUX1-207ENST00000465461 OLFM4Q6UX06 510 aa14.86□□□□□ -0.03
CUX1-207ENST00000465461 ZBTB38Q8NAP3 1195 aaPredicted RBP14.86□□□□□ -0.03
CUX1-207ENST00000465461 NLRP3Q96P20 1036 aa14.86□□□□□ -0.03
CUX1-207ENST00000465461 IRS4O14654 1257 aaPredicted RBP14.85□□□□□ -0.03
CUX1-207ENST00000465461 BCAR3O75815 825 aa14.85□□□□□ -0.03
CUX1-207ENST00000465461 CRY2Q49AN0 593 aa14.85□□□□□ -0.03
CUX1-207ENST00000465461 BEND3Q5T5X7 828 aa14.85□□□□□ -0.03
CUX1-207ENST00000465461 PRPF40BQ6NWY9 871 aaKnown RBP14.85□□□□□ -0.03
CUX1-207ENST00000465461 RPGRQ92834 1020 aaKnown RBP14.85□□□□□ -0.03
CUX1-207ENST00000465461 NOB1Q9ULX3 412 aaKnown RBP14.85□□□□□ -0.03
CUX1-207ENST00000465461 PDZRN3Q9UPQ7 1066 aa14.85□□□□□ -0.03
CUX1-207ENST00000465461 SLX4Q8IY92 1834 aa14.85□□□□□ -0.03
CUX1-207ENST00000465461 DDX60Q8IY21 1712 aaKnown RBP14.84□□□□□ -0.03
CUX1-207ENST00000465461 PCCAP05165 728 aaPredicted RBP14.84□□□□□ -0.03
CUX1-207ENST00000465461 CT47B1P0C2W7 299 aaPredicted RBP14.84□□□□□ -0.03
CUX1-207ENST00000465461 CNKSR1Q969H4 720 aa14.84□□□□□ -0.03
CUX1-207ENST00000465461 CCDC85AQ96PX6 553 aaPredicted RBP14.84□□□□□ -0.03
CUX1-207ENST00000465461 RNF123Q5XPI4 1314 aa14.84□□□□□ -0.03
CUX1-207ENST00000465461 LAMB2P55268 1798 aa14.83□□□□□ -0.03
CUX1-207ENST00000465461 GCKRQ14397 625 aa14.83□□□□□ -0.04
CUX1-207ENST00000465461 LINS1Q8NG48 757 aa14.83□□□□□ -0.04
CUX1-207ENST00000465461 RIC1Q4ADV7 1423 aa14.83□□□□□ -0.04
CUX1-207ENST00000465461 ARFGEF1Q9Y6D6 1849 aa14.82□□□□□ -0.04
CUX1-207ENST00000465461 H7C1W4 665 aa14.82□□□□□ -0.04
CUX1-207ENST00000465461 RASSF7Q02833 373 aa14.82□□□□□ -0.04
CUX1-207ENST00000465461 UBE3BQ7Z3V4 1068 aa14.82□□□□□ -0.04
CUX1-207ENST00000465461 RBM17Q96I25 401 aaKnown RBP14.82□□□□□ -0.04
CUX1-207ENST00000465461 TNNQ9UQP3 1299 aa14.82□□□□□ -0.04
CUX1-207ENST00000465461 TAF1P21675 1872 aa14.82□□□□□ -0.04
CUX1-207ENST00000465461 ALDH1B1P30837 517 aa14.81□□□□□ -0.04
CUX1-207ENST00000465461 HOXA10P31260 410 aaPredicted RBP14.81□□□□□ -0.04
CUX1-207ENST00000465461 C7orf43Q8WVR3 580 aa14.81□□□□□ -0.04
CUX1-207ENST00000465461 ABCC4O15439 1325 aa14.81□□□□□ -0.04
CUX1-207ENST00000465461 PTPRCP08575 1304 aa14.81□□□□□ -0.04
CUX1-207ENST00000465461 COL4A1P02462 1669 aa14.81□□□□□ -0.04
CUX1-207ENST00000465461 GOLGB1Q14789 3259 aaKnown RBP14.8□□□□□ -0.04
CUX1-207ENST00000465461 YY1P25490 414 aa14.8□□□□□ -0.04
CUX1-207ENST00000465461 PRELPP51888 382 aa14.8□□□□□ -0.04
CUX1-207ENST00000465461 CASP7P55210 303 aa14.8□□□□□ -0.04
CUX1-207ENST00000465461 FRAT1Q92837 279 aaPredicted RBP14.8□□□□□ -0.04
CUX1-207ENST00000465461 CRAMP1Q96RY5 1269 aa14.8□□□□□ -0.04
CUX1-207ENST00000465461 SRCIN1Q9C0H9 1055 aa14.8□□□□□ -0.04
CUX1-207ENST00000465461 NFKBIEO00221 500 aa14.79□□□□□ -0.04
CUX1-207ENST00000465461 PDE8AO60658 829 aa14.79□□□□□ -0.04
CUX1-207ENST00000465461 SF3B3Q15393 1217 aaKnown RBP14.79□□□□□ -0.04
CUX1-207ENST00000465461 DDX46Q7L014 1031 aaKnown RBP14.79□□□□□ -0.04
CUX1-207ENST00000465461 CDHR2Q9BYE9 1310 aa14.79□□□□□ -0.04
CUX1-207ENST00000465461 SEC31BQ9NQW1 1179 aa14.79□□□□□ -0.04
CUX1-207ENST00000465461 PPEF1O14829 653 aaPredicted RBP14.78□□□□□ -0.04
CUX1-207ENST00000465461 BRPF1P55201 1214 aaPredicted RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms