RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 CRY2Q49AN0 593 aa17.47■□□□□ 0.39
LIMD1-203ENST00000465039 G2E3Q7L622 706 aa17.47■□□□□ 0.39
LIMD1-203ENST00000465039 MRPL50Q8N5N7 158 aaKnown RBP17.47■□□□□ 0.39
LIMD1-203ENST00000465039 DNAAF4Q8WXU2 420 aa17.47■□□□□ 0.39
LIMD1-203ENST00000465039 SSH1Q8WYL5 1049 aa17.47■□□□□ 0.39
LIMD1-203ENST00000465039 PIM2Q9P1W9 311 aa17.47■□□□□ 0.39
LIMD1-203ENST00000465039 N4BP2Q86UW6 1770 aaPredicted RBP17.47■□□□□ 0.39
LIMD1-203ENST00000465039 ARFGEF1Q9Y6D6 1849 aa17.47■□□□□ 0.39
LIMD1-203ENST00000465039 COL11A2P13942 1736 aaPredicted RBP17.47■□□□□ 0.39
LIMD1-203ENST00000465039 KIF16BQ96L93 1317 aa17.47■□□□□ 0.39
LIMD1-203ENST00000465039 ABCC12Q96J65 1359 aa17.46■□□□□ 0.39
LIMD1-203ENST00000465039 DPEP1P16444 411 aa17.46■□□□□ 0.39
LIMD1-203ENST00000465039 STYK1Q6J9G0 422 aa17.46■□□□□ 0.39
LIMD1-203ENST00000465039 LINS1Q8NG48 757 aa17.46■□□□□ 0.39
LIMD1-203ENST00000465039 TCERG1O14776 1098 aaKnown RBP17.45■□□□□ 0.38
LIMD1-203ENST00000465039 GRIN3BO60391 1043 aa17.45■□□□□ 0.38
LIMD1-203ENST00000465039 SRGNP10124 158 aa17.45■□□□□ 0.38
LIMD1-203ENST00000465039 SMC4Q9NTJ3 1288 aa17.45■□□□□ 0.38
LIMD1-203ENST00000465039 CWC25Q9NXE8 425 aaPredicted RBP17.45■□□□□ 0.38
LIMD1-203ENST00000465039 TRMT112Q9UI30 125 aaKnown RBP17.45■□□□□ 0.38
LIMD1-203ENST00000465039 KCNA3P22001 575 aa17.44■□□□□ 0.38
LIMD1-203ENST00000465039 RARSP54136 660 aaKnown RBP17.44■□□□□ 0.38
LIMD1-203ENST00000465039 C2CD5Q86YS7 1000 aa17.44■□□□□ 0.38
LIMD1-203ENST00000465039 ZBTB38Q8NAP3 1195 aaPredicted RBP17.44■□□□□ 0.38
LIMD1-203ENST00000465039 MYD88Q99836 296 aa17.44■□□□□ 0.38
LIMD1-203ENST00000465039 TNRC6CQ9HCJ0 1690 aaKnown RBP17.44■□□□□ 0.38
LIMD1-203ENST00000465039 A0A0G2JLW4 131 aa17.43■□□□□ 0.38
LIMD1-203ENST00000465039 PCCAP05165 728 aaPredicted RBP17.43■□□□□ 0.38
LIMD1-203ENST00000465039 NPR1P16066 1061 aa17.43■□□□□ 0.38
LIMD1-203ENST00000465039 HOXA10P31260 410 aaPredicted RBP17.43■□□□□ 0.38
LIMD1-203ENST00000465039 ERFEQ4G0M1 354 aa17.43■□□□□ 0.38
LIMD1-203ENST00000465039 DALRD3Q5D0E6 543 aaKnown RBP17.43■□□□□ 0.38
LIMD1-203ENST00000465039 ARHGAP45Q92619 1136 aa17.43■□□□□ 0.38
LIMD1-203ENST00000465039 CNKSR1Q969H4 720 aa17.43■□□□□ 0.38
LIMD1-203ENST00000465039 MASTLQ96GX5 879 aa17.43■□□□□ 0.38
LIMD1-203ENST00000465039 CDHR2Q9BYE9 1310 aa17.43■□□□□ 0.38
LIMD1-203ENST00000465039 GOLGB1Q14789 3259 aaKnown RBP17.43■□□□□ 0.38
LIMD1-203ENST00000465039 NEURL1BA8MQ27 555 aa17.42■□□□□ 0.38
LIMD1-203ENST00000465039 ATP5J2-PTCD1G3V325 749 aa17.42■□□□□ 0.38
LIMD1-203ENST00000465039 IGKV5-2P06315 115 aa17.42■□□□□ 0.38
LIMD1-203ENST00000465039 NUTM1Q86Y26 1132 aa17.42■□□□□ 0.38
LIMD1-203ENST00000465039 NLRP3Q96P20 1036 aa17.42■□□□□ 0.38
LIMD1-203ENST00000465039 DDX60Q8IY21 1712 aaKnown RBP17.41■□□□□ 0.38
LIMD1-203ENST00000465039 ALDH1L1O75891 902 aa17.41■□□□□ 0.38
LIMD1-203ENST00000465039 GPR162Q16538 588 aa17.41■□□□□ 0.38
LIMD1-203ENST00000465039 TTLL6Q8N841 843 aa17.41■□□□□ 0.38
LIMD1-203ENST00000465039 FAM177BA6PVY3 158 aa17.4■□□□□ 0.38
LIMD1-203ENST00000465039 IPO8O15397 1037 aaKnown RBP17.4■□□□□ 0.38
LIMD1-203ENST00000465039 CHRNA5P30532 468 aa17.4■□□□□ 0.38
LIMD1-203ENST00000465039 ALDH1B1P30837 517 aa17.4■□□□□ 0.38
LIMD1-203ENST00000465039 GCKRQ14397 625 aa17.4■□□□□ 0.38
LIMD1-203ENST00000465039 BEND3Q5T5X7 828 aa17.4■□□□□ 0.38
LIMD1-203ENST00000465039 SOGA3Q5TF21 947 aa17.4■□□□□ 0.38
LIMD1-203ENST00000465039 API5Q9BZZ5 524 aaKnown RBP17.4■□□□□ 0.38
LIMD1-203ENST00000465039 CRAMP1Q96RY5 1269 aa17.39■□□□□ 0.37
LIMD1-203ENST00000465039 YBX3P16989 372 aaKnown RBP eCLIP17.38■□□□□ 0.371e-7■□□□□ 8.1
LIMD1-203ENST00000465039 SF3B3Q15393 1217 aaKnown RBP17.38■□□□□ 0.37
LIMD1-203ENST00000465039 GRIPAP1Q4V328 841 aa17.38■□□□□ 0.37
LIMD1-203ENST00000465039 RPGRQ92834 1020 aaKnown RBP17.38■□□□□ 0.37
LIMD1-203ENST00000465039 SRCIN1Q9C0H9 1055 aa17.38■□□□□ 0.37
LIMD1-203ENST00000465039 H7C1W4 665 aa17.37■□□□□ 0.37
LIMD1-203ENST00000465039 IRS4O14654 1257 aaPredicted RBP17.37■□□□□ 0.37
LIMD1-203ENST00000465039 CWF19L2Q2TBE0 894 aaKnown RBP17.37■□□□□ 0.37
LIMD1-203ENST00000465039 TMC4Q7Z404 712 aa17.37■□□□□ 0.37
LIMD1-203ENST00000465039 FAM89AQ96GI7 184 aa17.37■□□□□ 0.37
LIMD1-203ENST00000465039 PLA2G12BQ9BX93 195 aa17.37■□□□□ 0.37
LIMD1-203ENST00000465039 BCL2L13Q9BXK5 485 aa17.37■□□□□ 0.37
LIMD1-203ENST00000465039 BCS1LQ9Y276 419 aa17.37■□□□□ 0.37
LIMD1-203ENST00000465039 RTL9Q8NET4 1388 aa17.37■□□□□ 0.37
LIMD1-203ENST00000465039 MYH3P11055 1940 aa17.37■□□□□ 0.37
LIMD1-203ENST00000465039 F6X3S4 739 aa17.36■□□□□ 0.37
LIMD1-203ENST00000465039 PDE8AO60658 829 aa17.36■□□□□ 0.37
LIMD1-203ENST00000465039 CCT4P50991 539 aaKnown RBP17.36■□□□□ 0.37
LIMD1-203ENST00000465039 CC2D2BQ6DHV5 1058 aa17.36■□□□□ 0.37
LIMD1-203ENST00000465039 PRPF40BQ6NWY9 871 aaKnown RBP17.36■□□□□ 0.37
LIMD1-203ENST00000465039 CCDC24Q8N4L8 307 aa17.36■□□□□ 0.37
LIMD1-203ENST00000465039 RBM17Q96I25 401 aaKnown RBP17.36■□□□□ 0.37
LIMD1-203ENST00000465039 CHD4Q14839 1912 aa17.36■□□□□ 0.37
LIMD1-203ENST00000465039 ZNF622Q969S3 477 aaKnown RBP eCLIP17.35■□□□□ 0.37
LIMD1-203ENST00000465039 UTYO14607 1347 aa17.35■□□□□ 0.37
LIMD1-203ENST00000465039 GRM8O00222 908 aa17.34■□□□□ 0.37
LIMD1-203ENST00000465039 ABCC4O15439 1325 aa17.34■□□□□ 0.37
LIMD1-203ENST00000465039 HCLS1P14317 486 aaPredicted RBP17.34■□□□□ 0.37
LIMD1-203ENST00000465039 UTRNP46939 3433 aa17.34■□□□□ 0.37
LIMD1-203ENST00000465039 CASP7P55210 303 aa17.34■□□□□ 0.37
LIMD1-203ENST00000465039 LTBP3Q9NS15 1303 aa17.34■□□□□ 0.37
LIMD1-203ENST00000465039 NOB1Q9ULX3 412 aaKnown RBP17.34■□□□□ 0.37
LIMD1-203ENST00000465039 SLX4Q8IY92 1834 aa17.33■□□□□ 0.37
LIMD1-203ENST00000465039 BBOX1O75936 387 aa17.33■□□□□ 0.36
LIMD1-203ENST00000465039 CCDC152Q4G0S7 254 aa17.33■□□□□ 0.36
LIMD1-203ENST00000465039 SLC4A10Q6U841 1118 aa17.33■□□□□ 0.36
LIMD1-203ENST00000465039 ATF7IPQ6VMQ6 1270 aa17.33■□□□□ 0.36
LIMD1-203ENST00000465039 DDX46Q7L014 1031 aaKnown RBP17.33■□□□□ 0.36
LIMD1-203ENST00000465039 UBE3BQ7Z3V4 1068 aa17.33■□□□□ 0.36
LIMD1-203ENST00000465039 PELP1Q8IZL8 1130 aaKnown RBP17.33■□□□□ 0.36
LIMD1-203ENST00000465039 C7orf43Q8WVR3 580 aa17.33■□□□□ 0.36
LIMD1-203ENST00000465039 CTSWP56202 376 aa17.32■□□□□ 0.36
LIMD1-203ENST00000465039 C3orf67Q6ZVT6 689 aa17.32■□□□□ 0.36
LIMD1-203ENST00000465039 SYNE4Q8N205 404 aa17.32■□□□□ 0.36
LIMD1-203ENST00000465039 HDAC5Q9UQL6 1122 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms