RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 RARSP54136 660 aaKnown RBP25.17■■□□□ 1.62
COL9A3-204ENST00000463487 CWC25Q9NXE8 425 aaPredicted RBP25.17■■□□□ 1.62
COL9A3-204ENST00000463487 H0YIN7 160 aa25.16■■□□□ 1.62
COL9A3-204ENST00000463487 HSP90B1P14625 803 aaKnown RBP25.16■■□□□ 1.62
COL9A3-204ENST00000463487 PXDNLA1KZ92 1463 aa25.15■■□□□ 1.62
COL9A3-204ENST00000463487 SH3TC1Q8TE82 1336 aa25.15■■□□□ 1.62
COL9A3-204ENST00000463487 BRPF1P55201 1214 aaPredicted RBP25.15■■□□□ 1.62
COL9A3-204ENST00000463487 NUTM1Q86Y26 1132 aa25.15■■□□□ 1.62
COL9A3-204ENST00000463487 RIC1Q4ADV7 1423 aa25.14■■□□□ 1.62
COL9A3-204ENST00000463487 LINS1Q8NG48 757 aa25.14■■□□□ 1.62
COL9A3-204ENST00000463487 IPO8O15397 1037 aaKnown RBP25.13■■□□□ 1.61
COL9A3-204ENST00000463487 ERFEQ4G0M1 354 aa25.13■■□□□ 1.61
COL9A3-204ENST00000463487 C2CD5Q86YS7 1000 aa25.13■■□□□ 1.61
COL9A3-204ENST00000463487 CCDC24Q8N4L8 307 aa25.13■■□□□ 1.61
COL9A3-204ENST00000463487 A0A0G2JLW4 131 aa25.12■■□□□ 1.61
COL9A3-204ENST00000463487 DPEP1P16444 411 aa25.12■■□□□ 1.61
COL9A3-204ENST00000463487 ZBTB38Q8NAP3 1195 aaPredicted RBP25.12■■□□□ 1.61
COL9A3-204ENST00000463487 PIM2Q9P1W9 311 aa25.12■■□□□ 1.61
COL9A3-204ENST00000463487 F6X3S4 739 aa25.11■■□□□ 1.61
COL9A3-204ENST00000463487 SLC4A10Q6U841 1118 aa25.11■■□□□ 1.61
COL9A3-204ENST00000463487 API5Q9BZZ5 524 aaKnown RBP25.11■■□□□ 1.61
COL9A3-204ENST00000463487 ABCC12Q96J65 1359 aa25.1■■□□□ 1.61
COL9A3-204ENST00000463487 NEURL1BA8MQ27 555 aa25.1■■□□□ 1.61
COL9A3-204ENST00000463487 PELP1Q8IZL8 1130 aaKnown RBP25.1■■□□□ 1.61
COL9A3-204ENST00000463487 NLRP3Q96P20 1036 aa25.1■■□□□ 1.61
COL9A3-204ENST00000463487 ANKRD31Q8N7Z5 1873 aa25.1■■□□□ 1.61
COL9A3-204ENST00000463487 N4BP2Q86UW6 1770 aaPredicted RBP25.1■■□□□ 1.61
COL9A3-204ENST00000463487 PCCAP05165 728 aaPredicted RBP25.09■■□□□ 1.61
COL9A3-204ENST00000463487 IGKV5-2P06315 115 aa25.09■■□□□ 1.61
COL9A3-204ENST00000463487 CHRNA5P30532 468 aa25.09■■□□□ 1.61
COL9A3-204ENST00000463487 GPR162Q16538 588 aa25.09■■□□□ 1.61
COL9A3-204ENST00000463487 SLC10A5Q5PT55 438 aa25.09■■□□□ 1.61
COL9A3-204ENST00000463487 ARHGAP45Q92619 1136 aa25.09■■□□□ 1.61
COL9A3-204ENST00000463487 NOB1Q9ULX3 412 aaKnown RBP25.09■■□□□ 1.61
COL9A3-204ENST00000463487 KIAA1551Q9HCM1 1747 aa25.09■■□□□ 1.61
COL9A3-204ENST00000463487 CWF19L2Q2TBE0 894 aaKnown RBP25.08■■□□□ 1.61
COL9A3-204ENST00000463487 FAM89AQ96GI7 184 aa25.08■■□□□ 1.61
COL9A3-204ENST00000463487 MASTLQ96GX5 879 aa25.08■■□□□ 1.61
COL9A3-204ENST00000463487 SRCIN1Q9C0H9 1055 aa25.08■■□□□ 1.61
COL9A3-204ENST00000463487 ALDH1L1O75891 902 aa25.07■■□□□ 1.6
COL9A3-204ENST00000463487 NPR1P16066 1061 aa25.07■■□□□ 1.6
COL9A3-204ENST00000463487 STYK1Q6J9G0 422 aa25.07■■□□□ 1.6
COL9A3-204ENST00000463487 RPGRQ92834 1020 aaKnown RBP25.07■■□□□ 1.6
COL9A3-204ENST00000463487 CNKSR1Q969H4 720 aa25.07■■□□□ 1.6
COL9A3-204ENST00000463487 ZNF622Q969S3 477 aaKnown RBP eCLIP25.07■■□□□ 1.6
COL9A3-204ENST00000463487 DLEC1Q9Y238 1755 aa25.06■■□□□ 1.6
COL9A3-204ENST00000463487 KLRG2A4D1S0 409 aaPredicted RBP25.06■■□□□ 1.6
COL9A3-204ENST00000463487 IRS4O14654 1257 aaPredicted RBP25.06■■□□□ 1.6
COL9A3-204ENST00000463487 SRGNP10124 158 aa25.06■■□□□ 1.6
COL9A3-204ENST00000463487 GCKRQ14397 625 aa25.06■■□□□ 1.6
COL9A3-204ENST00000463487 DALRD3Q5D0E6 543 aaKnown RBP25.06■■□□□ 1.6
COL9A3-204ENST00000463487 BEND3Q5T5X7 828 aa25.06■■□□□ 1.6
COL9A3-204ENST00000463487 FRAT1Q92837 279 aaPredicted RBP25.06■■□□□ 1.6
COL9A3-204ENST00000463487 RTL5Q5HYW3 569 aaPredicted RBP25.05■■□□□ 1.6
COL9A3-204ENST00000463487 TTLL6Q8N841 843 aa25.05■■□□□ 1.6
COL9A3-204ENST00000463487 BCS1LQ9Y276 419 aa25.05■■□□□ 1.6
COL9A3-204ENST00000463487 GRIN3BO60391 1043 aa25.04■■□□□ 1.6
COL9A3-204ENST00000463487 BCAR3O75815 825 aa25.04■■□□□ 1.6
COL9A3-204ENST00000463487 HCLS1P14317 486 aaPredicted RBP25.04■■□□□ 1.6
COL9A3-204ENST00000463487 KCNA3P22001 575 aa25.04■■□□□ 1.6
COL9A3-204ENST00000463487 CRY2Q49AN0 593 aa25.04■■□□□ 1.6
COL9A3-204ENST00000463487 CDHR2Q9BYE9 1310 aa25.04■■□□□ 1.6
COL9A3-204ENST00000463487 ALDH1B1P30837 517 aa25.03■■□□□ 1.6
COL9A3-204ENST00000463487 CCT4P50991 539 aaKnown RBP25.03■■□□□ 1.6
COL9A3-204ENST00000463487 COL11A2P13942 1736 aaPredicted RBP25.03■■□□□ 1.6
COL9A3-204ENST00000463487 TNRC6CQ9HCJ0 1690 aaKnown RBP25.02■■□□□ 1.6
COL9A3-204ENST00000463487 ZKSCAN2Q63HK3 967 aa25.02■■□□□ 1.6
COL9A3-204ENST00000463487 UBE3BQ7Z3V4 1068 aa25.02■■□□□ 1.6
COL9A3-204ENST00000463487 RBM17Q96I25 401 aaKnown RBP25.02■■□□□ 1.6
COL9A3-204ENST00000463487 C9orf78Q9NZ63 289 aaPredicted RBP25.02■■□□□ 1.6
COL9A3-204ENST00000463487 RCAN3Q9UKA8 241 aa25.02■■□□□ 1.6
COL9A3-204ENST00000463487 LAMB2P55268 1798 aa25.02■■□□□ 1.6
COL9A3-204ENST00000463487 BRCA1P38398 1863 aaKnown RBP25.02■■□□□ 1.6
COL9A3-204ENST00000463487 PDE8AO60658 829 aa25.01■■□□□ 1.59
COL9A3-204ENST00000463487 ATF7IPQ6VMQ6 1270 aa25.01■■□□□ 1.59
COL9A3-204ENST00000463487 SYNE4Q8N205 404 aa25.01■■□□□ 1.59
COL9A3-204ENST00000463487 WWC3Q9ULE0 1092 aa25.01■■□□□ 1.59
COL9A3-204ENST00000463487 H7C1W4 665 aa25■■□□□ 1.59
COL9A3-204ENST00000463487 GRM8O00222 908 aa25■■□□□ 1.59
COL9A3-204ENST00000463487 DDX46Q7L014 1031 aaKnown RBP24.99■■□□□ 1.59
COL9A3-204ENST00000463487 DDX60Q8IY21 1712 aaKnown RBP24.98■■□□□ 1.59
COL9A3-204ENST00000463487 HOXA10P31260 410 aaPredicted RBP24.98■■□□□ 1.59
COL9A3-204ENST00000463487 CCDC152Q4G0S7 254 aa24.98■■□□□ 1.59
COL9A3-204ENST00000463487 SOGA3Q5TF21 947 aa24.98■■□□□ 1.59
COL9A3-204ENST00000463487 CRAMP1Q96RY5 1269 aa24.98■■□□□ 1.59
COL9A3-204ENST00000463487 TRIM27P14373 513 aa24.97■■□□□ 1.59
COL9A3-204ENST00000463487 SF3B3Q15393 1217 aaKnown RBP24.97■■□□□ 1.59
COL9A3-204ENST00000463487 PRPF40BQ6NWY9 871 aaKnown RBP24.97■■□□□ 1.59
COL9A3-204ENST00000463487 FTSJ3Q8IY81 847 aaKnown RBP24.97■■□□□ 1.59
COL9A3-204ENST00000463487 TMX4Q9H1E5 349 aaPredicted RBP24.97■■□□□ 1.59
COL9A3-204ENST00000463487 ABCC4O15439 1325 aa24.96■■□□□ 1.59
COL9A3-204ENST00000463487 MS4A1P11836 297 aa24.96■■□□□ 1.59
COL9A3-204ENST00000463487 YBX3P16989 372 aaKnown RBP eCLIP24.96■■□□□ 1.59
COL9A3-204ENST00000463487 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.96■■□□□ 1.59
COL9A3-204ENST00000463487 JARID2Q92833 1246 aaPredicted RBP24.96■■□□□ 1.59
COL9A3-204ENST00000463487 HDAC5Q9UQL6 1122 aa24.96■■□□□ 1.59
COL9A3-204ENST00000463487 ARFGEF1Q9Y6D6 1849 aa24.96■■□□□ 1.59
COL9A3-204ENST00000463487 CTSWP56202 376 aa24.95■■□□□ 1.58
COL9A3-204ENST00000463487 C3orf67Q6ZVT6 689 aa24.95■■□□□ 1.58
COL9A3-204ENST00000463487 PLA2G12BQ9BX93 195 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms