RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 CASZ1Q86V15 1759 aa9.79□□□□□ -0.84
USP4-207ENST00000462673 TCERG1O14776 1098 aaKnown RBP9.79□□□□□ -0.84
USP4-207ENST00000462673 ALDH1B1P30837 517 aa9.79□□□□□ -0.84
USP4-207ENST00000462673 MRPL50Q8N5N7 158 aaKnown RBP9.79□□□□□ -0.84
USP4-207ENST00000462673 LINS1Q8NG48 757 aa9.79□□□□□ -0.84
USP4-207ENST00000462673 SSH1Q8WYL5 1049 aa9.79□□□□□ -0.84
USP4-207ENST00000462673 FHDC1Q9C0D6 1143 aaPredicted RBP9.79□□□□□ -0.84
USP4-207ENST00000462673 CWC25Q9NXE8 425 aaPredicted RBP9.79□□□□□ -0.84
USP4-207ENST00000462673 CACNA1FO60840 1977 aa9.79□□□□□ -0.84
USP4-207ENST00000462673 GPTP24298 496 aa9.78□□□□□ -0.84
USP4-207ENST00000462673 RARSP54136 660 aaKnown RBP9.78□□□□□ -0.84
USP4-207ENST00000462673 NLRP10Q86W26 655 aa9.78□□□□□ -0.84
USP4-207ENST00000462673 ZBTB38Q8NAP3 1195 aaPredicted RBP9.78□□□□□ -0.84
USP4-207ENST00000462673 MYD88Q99836 296 aa9.78□□□□□ -0.84
USP4-207ENST00000462673 ISCA1Q9BUE6 129 aa9.78□□□□□ -0.84
USP4-207ENST00000462673 CHMP4BQ9H444 224 aaKnown RBP9.78□□□□□ -0.84
USP4-207ENST00000462673 PIM2Q9P1W9 311 aa9.78□□□□□ -0.84
USP4-207ENST00000462673 ATP10DQ9P241 1426 aa9.78□□□□□ -0.84
USP4-207ENST00000462673 SH3TC1Q8TE82 1336 aa9.78□□□□□ -0.84
USP4-207ENST00000462673 IBTKQ9P2D0 1353 aaPredicted RBP9.77□□□□□ -0.84
USP4-207ENST00000462673 FAM177BA6PVY3 158 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 GRIN3BO60391 1043 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 ALDH1L1O75891 902 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 CCT4P50991 539 aaKnown RBP9.77□□□□□ -0.85
USP4-207ENST00000462673 DDR1Q08345 913 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 SLC10A5Q5PT55 438 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 SUSD4Q5VX71 490 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 PRR5LQ6MZQ0 368 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 SLC4A10Q6U841 1118 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 CNKSR1Q969H4 720 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 SRCIN1Q9C0H9 1055 aa9.77□□□□□ -0.85
USP4-207ENST00000462673 C9orf78Q9NZ63 289 aaPredicted RBP9.77□□□□□ -0.85
USP4-207ENST00000462673 NOB1Q9ULX3 412 aaKnown RBP9.77□□□□□ -0.85
USP4-207ENST00000462673 ATP5J2-PTCD1G3V325 749 aa9.76□□□□□ -0.85
USP4-207ENST00000462673 GPR162Q16538 588 aa9.76□□□□□ -0.85
USP4-207ENST00000462673 GRIPAP1Q4V328 841 aa9.76□□□□□ -0.85
USP4-207ENST00000462673 ZKSCAN2Q63HK3 967 aa9.76□□□□□ -0.85
USP4-207ENST00000462673 G2E3Q7L622 706 aa9.76□□□□□ -0.85
USP4-207ENST00000462673 RPGRQ92834 1020 aaKnown RBP9.76□□□□□ -0.85
USP4-207ENST00000462673 FRAT1Q92837 279 aaPredicted RBP9.76□□□□□ -0.85
USP4-207ENST00000462673 MASTLQ96GX5 879 aa9.76□□□□□ -0.85
USP4-207ENST00000462673 RBM17Q96I25 401 aaKnown RBP9.76□□□□□ -0.85
USP4-207ENST00000462673 TUBGCP6Q96RT7 1819 aa9.75□□□□□ -0.85
USP4-207ENST00000462673 LRP5O75197 1615 aa9.75□□□□□ -0.85
USP4-207ENST00000462673 PCCAP05165 728 aaPredicted RBP9.75□□□□□ -0.85
USP4-207ENST00000462673 NPR1P16066 1061 aa9.75□□□□□ -0.85
USP4-207ENST00000462673 RRP1P56182 461 aaKnown RBP9.75□□□□□ -0.85
USP4-207ENST00000462673 SOGA3Q5TF21 947 aa9.75□□□□□ -0.85
USP4-207ENST00000462673 ATF7IPQ6VMQ6 1270 aa9.75□□□□□ -0.85
USP4-207ENST00000462673 C2CD5Q86YS7 1000 aa9.75□□□□□ -0.85
USP4-207ENST00000462673 FTSJ3Q8IY81 847 aaKnown RBP9.75□□□□□ -0.85
USP4-207ENST00000462673 ZNF622Q969S3 477 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP4-207ENST00000462673 DDRGK1Q96HY6 314 aa9.75□□□□□ -0.85
USP4-207ENST00000462673 RCAN3Q9UKA8 241 aa9.75□□□□□ -0.85
USP4-207ENST00000462673 A0A0G2JLW4 131 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 KLRG2A4D1S0 409 aaPredicted RBP9.74□□□□□ -0.85
USP4-207ENST00000462673 NEURL1BA8MQ27 555 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 IRS4O14654 1257 aaPredicted RBP9.74□□□□□ -0.85
USP4-207ENST00000462673 PDE8AO60658 829 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 GCKRQ14397 625 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 ERFEQ4G0M1 354 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 DALRD3Q5D0E6 543 aaKnown RBP9.74□□□□□ -0.85
USP4-207ENST00000462673 STYK1Q6J9G0 422 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 DDX46Q7L014 1031 aaKnown RBP9.74□□□□□ -0.85
USP4-207ENST00000462673 TMC4Q7Z404 712 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 TTLL6Q8N841 843 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 FAM89AQ96GI7 184 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 BCL2L13Q9BXK5 485 aa9.74□□□□□ -0.85
USP4-207ENST00000462673 C4AP0C0L4 1744 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 H7C1W4 665 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 BBOX1O75936 387 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 NTSR2O95665 410 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 SRGNP10124 158 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 CCDC152Q4G0S7 254 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 BEND3Q5T5X7 828 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 CC2D2BQ6DHV5 1058 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 NUTM1Q86Y26 1132 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 UBN2Q6ZU65 1347 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 COL24A1Q17RW2 1714 aa9.73□□□□□ -0.85
USP4-207ENST00000462673 F6X3S4 739 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 GRM8O00222 908 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 BCAR3O75815 825 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 GNAI3P08754 354 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 DPEP1P16444 411 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 SF3B3Q15393 1217 aaKnown RBP9.72□□□□□ -0.85
USP4-207ENST00000462673 CWF19L2Q2TBE0 894 aaKnown RBP9.72□□□□□ -0.85
USP4-207ENST00000462673 CRAMP1Q96RY5 1269 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 BCS1LQ9Y276 419 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 CDHR2Q9BYE9 1310 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 NUP98P52948 1817 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 ADCY9O60503 1353 aa9.72□□□□□ -0.85
USP4-207ENST00000462673 SCN7AQ01118 1682 aa9.71□□□□□ -0.85
USP4-207ENST00000462673 IGKV5-2P06315 115 aa9.71□□□□□ -0.86
USP4-207ENST00000462673 HOXA10P31260 410 aaPredicted RBP9.71□□□□□ -0.86
USP4-207ENST00000462673 CRY2Q49AN0 593 aa9.71□□□□□ -0.86
USP4-207ENST00000462673 DZIP1LQ8IYY4 767 aaKnown RBP9.71□□□□□ -0.86
USP4-207ENST00000462673 RIC1Q4ADV7 1423 aa9.71□□□□□ -0.86
USP4-207ENST00000462673 C10orf71Q711Q0 1435 aa9.71□□□□□ -0.86
USP4-207ENST00000462673 BCORQ6W2J9 1755 aa9.7□□□□□ -0.86
USP4-207ENST00000462673 HCLS1P14317 486 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 156.6 ms