RNA–Protein interactions for RNA: ENST00000461437.5

NUP50-213, Transcript of nucleoporin 50, humanhuman

TSL 4

Gene NUP50, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-213ENST00000461437 CCDC93Q567U6 631 aa20.2■□□□□ 0.82
NUP50-213ENST00000461437 ZNF277Q9NRM2 450 aaPredicted RBP20.2■□□□□ 0.82
NUP50-213ENST00000461437 LTBP3Q9NS15 1303 aa20.2■□□□□ 0.82
NUP50-213ENST00000461437 IBTKQ9P2D0 1353 aaPredicted RBP20.2■□□□□ 0.82
NUP50-213ENST00000461437 WDR90Q96KV7 1748 aa20.19■□□□□ 0.82
NUP50-213ENST00000461437 ZNF853P0CG23 659 aa20.19■□□□□ 0.82
NUP50-213ENST00000461437 ZC3H4Q9UPT8 1303 aaKnown RBP20.19■□□□□ 0.82
NUP50-213ENST00000461437 DDX60Q8IY21 1712 aaKnown RBP20.19■□□□□ 0.82
NUP50-213ENST00000461437 HTRA3P83110 453 aa20.18■□□□□ 0.82
NUP50-213ENST00000461437 PPP1R42Q7Z4L9 355 aa20.18■□□□□ 0.82
NUP50-213ENST00000461437 RPGRQ92834 1020 aaKnown RBP20.18■□□□□ 0.82
NUP50-213ENST00000461437 POTECB2RU33 542 aa20.17■□□□□ 0.82
NUP50-213ENST00000461437 PARP10Q53GL7 1025 aa20.17■□□□□ 0.82
NUP50-213ENST00000461437 SOGA3Q5TF21 947 aa20.17■□□□□ 0.82
NUP50-213ENST00000461437 NLRP10Q86W26 655 aa20.17■□□□□ 0.82
NUP50-213ENST00000461437 RBM46Q8TBY0 533 aaKnown RBP20.17■□□□□ 0.82
NUP50-213ENST00000461437 UTP14AQ9BVJ6 771 aaKnown RBP20.17■□□□□ 0.82
NUP50-213ENST00000461437 RIC1Q4ADV7 1423 aa20.17■□□□□ 0.82
NUP50-213ENST00000461437 DDNO94850 711 aaPredicted RBP20.16■□□□□ 0.82
NUP50-213ENST00000461437 HCLS1P14317 486 aaPredicted RBP20.16■□□□□ 0.82
NUP50-213ENST00000461437 ALDH1B1P30837 517 aa20.16■□□□□ 0.82
NUP50-213ENST00000461437 FKBP4Q02790 459 aaKnown RBP eCLIP20.16■□□□□ 0.82
NUP50-213ENST00000461437 IFT57Q9NWB7 429 aa20.16■□□□□ 0.82
NUP50-213ENST00000461437 SNED1Q8TER0 1413 aa20.16■□□□□ 0.82
NUP50-213ENST00000461437 GNAI1P63096 354 aa20.15■□□□□ 0.82
NUP50-213ENST00000461437 TCIRG1Q13488 830 aa20.15■□□□□ 0.82
NUP50-213ENST00000461437 C8orf58Q8NAV2 365 aa20.15■□□□□ 0.82
NUP50-213ENST00000461437 MRS2Q9HD23 443 aa20.15■□□□□ 0.82
NUP50-213ENST00000461437 COL4A5P29400 1685 aa20.15■□□□□ 0.82
NUP50-213ENST00000461437 ZNF541Q9H0D2 1346 aa20.14■□□□□ 0.81
NUP50-213ENST00000461437 ATP5J2-PTCD1G3V325 749 aa20.14■□□□□ 0.81
NUP50-213ENST00000461437 TSR2Q969E8 191 aaKnown RBP20.14■□□□□ 0.81
NUP50-213ENST00000461437 PHAXQ9H814 394 aaKnown RBP20.14■□□□□ 0.81
NUP50-213ENST00000461437 DBF4Q9UBU7 674 aaPredicted RBP20.14■□□□□ 0.81
NUP50-213ENST00000461437 ANP32CO43423 234 aa20.13■□□□□ 0.81
NUP50-213ENST00000461437 HOXB7P09629 217 aa20.13■□□□□ 0.81
NUP50-213ENST00000461437 VEGFAP15692 232 aaPredicted RBP20.13■□□□□ 0.81
NUP50-213ENST00000461437 HOXA10P31260 410 aaPredicted RBP20.13■□□□□ 0.81
NUP50-213ENST00000461437 DPY19L2Q6NUT2 758 aa20.13■□□□□ 0.81
NUP50-213ENST00000461437 RBM17Q96I25 401 aaKnown RBP20.13■□□□□ 0.81
NUP50-213ENST00000461437 TRMT112Q9UI30 125 aaKnown RBP20.13■□□□□ 0.81
NUP50-213ENST00000461437 SALL2Q9Y467 1007 aaPredicted RBP20.13■□□□□ 0.81
NUP50-213ENST00000461437 COL4A1P02462 1669 aa20.13■□□□□ 0.81
NUP50-213ENST00000461437 PPEF1O14829 653 aaPredicted RBP20.12■□□□□ 0.81
NUP50-213ENST00000461437 HSP90AB3PQ58FF7 597 aa20.12■□□□□ 0.81
NUP50-213ENST00000461437 RTL5Q5HYW3 569 aaPredicted RBP20.12■□□□□ 0.81
NUP50-213ENST00000461437 TSPYL6Q8N831 410 aa20.12■□□□□ 0.81
NUP50-213ENST00000461437 PLBD2Q8NHP8 589 aa20.12■□□□□ 0.81
NUP50-213ENST00000461437 NLRP3Q96P20 1036 aa20.12■□□□□ 0.81
NUP50-213ENST00000461437 ABCC4O15439 1325 aa20.11■□□□□ 0.81
NUP50-213ENST00000461437 POTEIP0CG38 1075 aa20.11■□□□□ 0.81
NUP50-213ENST00000461437 POTEJP0CG39 1038 aa20.11■□□□□ 0.81
NUP50-213ENST00000461437 IARSP41252 1262 aaKnown RBP20.11■□□□□ 0.81
NUP50-213ENST00000461437 SLC10A5Q5PT55 438 aa20.11■□□□□ 0.81
NUP50-213ENST00000461437 ANKRD13DQ6ZTN6 518 aa20.11■□□□□ 0.81
NUP50-213ENST00000461437 RTKN2Q8IZC4 609 aa20.11■□□□□ 0.81
NUP50-213ENST00000461437 CRAMP1Q96RY5 1269 aa20.1■□□□□ 0.81
NUP50-213ENST00000461437 HYPKQ9NX55 129 aa20.1■□□□□ 0.81
NUP50-213ENST00000461437 SCN4AP35499 1836 aa20.09■□□□□ 0.81
NUP50-213ENST00000461437 APLP1P51693 650 aa20.09■□□□□ 0.81
NUP50-213ENST00000461437 CALD1Q05682 793 aaKnown RBP20.09■□□□□ 0.81
NUP50-213ENST00000461437 FAM89AQ96GI7 184 aa20.09■□□□□ 0.81
NUP50-213ENST00000461437 ISCA1Q9BUE6 129 aa20.09■□□□□ 0.81
NUP50-213ENST00000461437 SH3TC1Q8TE82 1336 aa20.08■□□□□ 0.81
NUP50-213ENST00000461437 FSTL1Q12841 308 aa20.08■□□□□ 0.81
NUP50-213ENST00000461437 WWC1Q8IX03 1113 aa20.08■□□□□ 0.81
NUP50-213ENST00000461437 SMC1BQ8NDV3 1235 aa20.08■□□□□ 0.81
NUP50-213ENST00000461437 RIC3Q7Z5B4 369 aa20.07■□□□□ 0.8
NUP50-213ENST00000461437 JARID2Q92833 1246 aaPredicted RBP20.06■□□□□ 0.8
NUP50-213ENST00000461437 PSMD1Q99460 953 aa20.06■□□□□ 0.8
NUP50-213ENST00000461437 MYD88Q99836 296 aa20.06■□□□□ 0.8
NUP50-213ENST00000461437 RNF123Q5XPI4 1314 aa20.05■□□□□ 0.8
NUP50-213ENST00000461437 LTBP1Q14766 1721 aa20.05■□□□□ 0.8
NUP50-213ENST00000461437 GOLGA2Q08379 1002 aa20.05■□□□□ 0.8
NUP50-213ENST00000461437 DNAJC5GQ8N7S2 189 aa20.04■□□□□ 0.8
NUP50-213ENST00000461437 ATP6V0A2Q9Y487 856 aa20.04■□□□□ 0.8
NUP50-213ENST00000461437 LRRC37AA6NMS7 1700 aa20.03■□□□□ 0.8
NUP50-213ENST00000461437 FZD9O00144 591 aa20.03■□□□□ 0.8
NUP50-213ENST00000461437 AOC3Q16853 763 aa20.03■□□□□ 0.8
NUP50-213ENST00000461437 CCDC27Q2M243 656 aa20.03■□□□□ 0.8
NUP50-213ENST00000461437 CC2D2BQ6DHV5 1058 aa20.03■□□□□ 0.8
NUP50-213ENST00000461437 DDX46Q7L014 1031 aaKnown RBP20.03■□□□□ 0.8
NUP50-213ENST00000461437 FAM9BQ8IZU0 186 aa20.03■□□□□ 0.8
NUP50-213ENST00000461437 LARGE2Q8N3Y3 721 aa20.03■□□□□ 0.8
NUP50-213ENST00000461437 GJA3Q9Y6H8 435 aa20.03■□□□□ 0.8
NUP50-213ENST00000461437 DUOX1Q9NRD9 1551 aa20.02■□□□□ 0.8
NUP50-213ENST00000461437 SPEF2Q9C093 1822 aa20.02■□□□□ 0.79
NUP50-213ENST00000461437 PPIP5K2O43314 1243 aa20.01■□□□□ 0.79
NUP50-213ENST00000461437 GRAPQ13588 217 aa20.01■□□□□ 0.79
NUP50-213ENST00000461437 CCDC30Q5VVM6 783 aa20.01■□□□□ 0.79
NUP50-213ENST00000461437 G2E3Q7L622 706 aa20.01■□□□□ 0.79
NUP50-213ENST00000461437 GRAPLQ8TC17 118 aaPredicted RBP20.01■□□□□ 0.79
NUP50-213ENST00000461437 JDP2Q8WYK2 163 aa20.01■□□□□ 0.79
NUP50-213ENST00000461437 CELF1Q92879 486 aaKnown RBP20.01■□□□□ 0.79
NUP50-213ENST00000461437 L3MBTL3Q96JM7 780 aaPredicted RBP20.01■□□□□ 0.79
NUP50-213ENST00000461437 TAF1DQ9H5J8 278 aaPredicted RBP20.01■□□□□ 0.79
NUP50-213ENST00000461437 IRS4O14654 1257 aaPredicted RBP20■□□□□ 0.79
NUP50-213ENST00000461437 TWISTNBQ3B726 338 aaPredicted RBP20■□□□□ 0.79
NUP50-213ENST00000461437 EAPPQ56P03 285 aaPredicted RBP20■□□□□ 0.79
NUP50-213ENST00000461437 MAP3K2Q9Y2U5 619 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms