RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 UTP14AQ9BVJ6 771 aaKnown RBP20.86■□□□□ 0.93
COL7A1-203ENST00000459756 IL16Q14005 1332 aa20.85■□□□□ 0.93
COL7A1-203ENST00000459756 SENP3-EIF4A1A0A087X0R7 540 aa20.85■□□□□ 0.93
COL7A1-203ENST00000459756 ANKRD13DQ6ZTN6 518 aa20.85■□□□□ 0.93
COL7A1-203ENST00000459756 LTBP3Q9NS15 1303 aa20.84■□□□□ 0.93
COL7A1-203ENST00000459756 PRELPP51888 382 aa20.84■□□□□ 0.93
COL7A1-203ENST00000459756 NLRP10Q86W26 655 aa20.84■□□□□ 0.93
COL7A1-203ENST00000459756 C7orf43Q8WVR3 580 aa20.84■□□□□ 0.93
COL7A1-203ENST00000459756 TAOK3Q9H2K8 898 aa20.84■□□□□ 0.93
COL7A1-203ENST00000459756 CCDC88AQ3V6T2 1871 aa20.84■□□□□ 0.93
COL7A1-203ENST00000459756 KDM2BQ8NHM5 1336 aa20.83■□□□□ 0.93
COL7A1-203ENST00000459756 SLC10A5Q5PT55 438 aa20.83■□□□□ 0.93
COL7A1-203ENST00000459756 RPGRQ92834 1020 aaKnown RBP20.83■□□□□ 0.93
COL7A1-203ENST00000459756 TSR2Q969E8 191 aaKnown RBP20.83■□□□□ 0.93
COL7A1-203ENST00000459756 HOXA10P31260 410 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-203ENST00000459756 CCDC93Q567U6 631 aa20.82■□□□□ 0.92
COL7A1-203ENST00000459756 CCDC30Q5VVM6 783 aa20.82■□□□□ 0.92
COL7A1-203ENST00000459756 FAM9BQ8IZU0 186 aa20.82■□□□□ 0.92
COL7A1-203ENST00000459756 KIF3CO14782 793 aa20.81■□□□□ 0.92
COL7A1-203ENST00000459756 WDR63Q8IWG1 891 aa20.81■□□□□ 0.92
COL7A1-203ENST00000459756 NLRP3Q96P20 1036 aa20.81■□□□□ 0.92
COL7A1-203ENST00000459756 TIAM2Q8IVF5 1701 aa20.81■□□□□ 0.92
COL7A1-203ENST00000459756 TSPYL6Q8N831 410 aa20.8■□□□□ 0.92
COL7A1-203ENST00000459756 RBM17Q96I25 401 aaKnown RBP20.8■□□□□ 0.92
COL7A1-203ENST00000459756 TRMT112Q9UI30 125 aaKnown RBP20.8■□□□□ 0.92
COL7A1-203ENST00000459756 DICER1Q9UPY3 1922 aaKnown RBP20.79■□□□□ 0.92
COL7A1-203ENST00000459756 GOLGA2Q08379 1002 aa20.79■□□□□ 0.92
COL7A1-203ENST00000459756 RTKN2Q8IZC4 609 aa20.79■□□□□ 0.92
COL7A1-203ENST00000459756 CRAMP1Q96RY5 1269 aa20.79■□□□□ 0.92
COL7A1-203ENST00000459756 ISCA1Q9BUE6 129 aa20.79■□□□□ 0.92
COL7A1-203ENST00000459756 NMRK2Q9NPI5 230 aa20.79■□□□□ 0.92
COL7A1-203ENST00000459756 SH3TC1Q8TE82 1336 aa20.78■□□□□ 0.92
COL7A1-203ENST00000459756 C3orf67Q6ZVT6 689 aa20.78■□□□□ 0.92
COL7A1-203ENST00000459756 PHAXQ9H814 394 aaKnown RBP20.78■□□□□ 0.92
COL7A1-203ENST00000459756 SALL2Q9Y467 1007 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-203ENST00000459756 TRIM28Q13263 835 aaKnown RBP20.77■□□□□ 0.92
COL7A1-203ENST00000459756 CC2D2BQ6DHV5 1058 aa20.77■□□□□ 0.92
COL7A1-203ENST00000459756 RIC3Q7Z5B4 369 aa20.77■□□□□ 0.92
COL7A1-203ENST00000459756 GLTPD2A6NH11 291 aa20.76■□□□□ 0.91
COL7A1-203ENST00000459756 ATP5J2-PTCD1G3V325 749 aa20.76■□□□□ 0.91
COL7A1-203ENST00000459756 DDX58O95786 925 aaKnown RBP20.76■□□□□ 0.91
COL7A1-203ENST00000459756 FKBP4Q02790 459 aaKnown RBP eCLIP20.76■□□□□ 0.91
COL7A1-203ENST00000459756 TWISTNBQ3B726 338 aaPredicted RBP20.76■□□□□ 0.91
COL7A1-203ENST00000459756 STK31Q9BXU1 1019 aa20.76■□□□□ 0.91
COL7A1-203ENST00000459756 FANCIQ9NVI1 1328 aa20.76■□□□□ 0.91
COL7A1-203ENST00000459756 TOMM70O94826 608 aa20.75■□□□□ 0.91
COL7A1-203ENST00000459756 HCLS1P14317 486 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-203ENST00000459756 GRIPAP1Q4V328 841 aa20.75■□□□□ 0.91
COL7A1-203ENST00000459756 OLFM4Q6UX06 510 aa20.75■□□□□ 0.91
COL7A1-203ENST00000459756 SYNE4Q8N205 404 aa20.75■□□□□ 0.91
COL7A1-203ENST00000459756 LAMB2P55268 1798 aa20.74■□□□□ 0.91
COL7A1-203ENST00000459756 DPY19L2Q6NUT2 758 aa20.74■□□□□ 0.91
COL7A1-203ENST00000459756 PPEF1O14829 653 aaPredicted RBP20.73■□□□□ 0.91
COL7A1-203ENST00000459756 PSMD1Q99460 953 aa20.73■□□□□ 0.91
COL7A1-203ENST00000459756 RRAGCQ9HB90 399 aa20.73■□□□□ 0.91
COL7A1-203ENST00000459756 SNED1Q8TER0 1413 aa20.72■□□□□ 0.91
COL7A1-203ENST00000459756 C16orf71Q8IYS4 520 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-203ENST00000459756 ZNF428Q96B54 188 aa20.71■□□□□ 0.91
COL7A1-203ENST00000459756 FAM89AQ96GI7 184 aa20.71■□□□□ 0.91
COL7A1-203ENST00000459756 MYD88Q99836 296 aa20.71■□□□□ 0.91
COL7A1-203ENST00000459756 TMX4Q9H1E5 349 aaPredicted RBP20.71■□□□□ 0.91
COL7A1-203ENST00000459756 ZNF277Q9NRM2 450 aaPredicted RBP20.71■□□□□ 0.91
COL7A1-203ENST00000459756 ABCC4O15439 1325 aa20.71■□□□□ 0.91
COL7A1-203ENST00000459756 DDX60Q8IY21 1712 aaKnown RBP20.7■□□□□ 0.9
COL7A1-203ENST00000459756 BBOX1O75936 387 aa20.7■□□□□ 0.9
COL7A1-203ENST00000459756 VEGFAP15692 232 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-203ENST00000459756 KSR2Q6VAB6 950 aa20.7■□□□□ 0.9
COL7A1-203ENST00000459756 DDX46Q7L014 1031 aaKnown RBP20.7■□□□□ 0.9
COL7A1-203ENST00000459756 CCDC191Q8NCU4 936 aa20.7■□□□□ 0.9
COL7A1-203ENST00000459756 RBM46Q8TBY0 533 aaKnown RBP20.7■□□□□ 0.9
COL7A1-203ENST00000459756 METTL22Q9BUU2 404 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-203ENST00000459756 MYH16Q9H6N6 1097 aa20.7■□□□□ 0.9
COL7A1-203ENST00000459756 ATP6V0A2Q9Y487 856 aa20.7■□□□□ 0.9
COL7A1-203ENST00000459756 TCERG1O14776 1098 aaKnown RBP20.69■□□□□ 0.9
COL7A1-203ENST00000459756 HSP90B1P14625 803 aaKnown RBP20.69■□□□□ 0.9
COL7A1-203ENST00000459756 IARSP41252 1262 aaKnown RBP20.69■□□□□ 0.9
COL7A1-203ENST00000459756 ZBTB38Q8NAP3 1195 aaPredicted RBP20.69■□□□□ 0.9
COL7A1-203ENST00000459756 MAP3K2Q9Y2U5 619 aa20.69■□□□□ 0.9
COL7A1-203ENST00000459756 WDR90Q96KV7 1748 aa20.68■□□□□ 0.9
COL7A1-203ENST00000459756 SLC4A2P04920 1241 aa20.68■□□□□ 0.9
COL7A1-203ENST00000459756 EXOSC9Q06265 439 aaKnown RBP20.68■□□□□ 0.9
COL7A1-203ENST00000459756 SF3B3Q15393 1217 aaKnown RBP20.68■□□□□ 0.9
COL7A1-203ENST00000459756 SPINK5Q9NQ38 1064 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-203ENST00000459756 CWC25Q9NXE8 425 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-203ENST00000459756 CACNA1FO60840 1977 aa20.68■□□□□ 0.9
COL7A1-203ENST00000459756 PI4KAP2A4QPH2 592 aa20.67■□□□□ 0.9
COL7A1-203ENST00000459756 IRS4O14654 1257 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-203ENST00000459756 VAMP4O75379 141 aa20.67■□□□□ 0.9
COL7A1-203ENST00000459756 HSPA6P17066 643 aa20.67■□□□□ 0.9
COL7A1-203ENST00000459756 RTL5Q5HYW3 569 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-203ENST00000459756 PI4KAP1Q8N8J0 262 aa20.67■□□□□ 0.9
COL7A1-203ENST00000459756 CEP350Q5VT06 3117 aa20.67■□□□□ 0.9
COL7A1-203ENST00000459756 GRAPQ13588 217 aa20.66■□□□□ 0.9
COL7A1-203ENST00000459756 TMC4Q7Z404 712 aa20.66■□□□□ 0.9
COL7A1-203ENST00000459756 SP8Q8IXZ3 490 aa20.66■□□□□ 0.9
COL7A1-203ENST00000459756 GRAPLQ8TC17 118 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-203ENST00000459756 ZNF521Q96K83 1311 aa20.65■□□□□ 0.9
COL7A1-203ENST00000459756 CCER2I3L3R5 266 aa20.65■□□□□ 0.9
COL7A1-203ENST00000459756 PCCAP05165 728 aaPredicted RBP20.65■□□□□ 0.9
COL7A1-203ENST00000459756 NEXNQ0ZGT2 675 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 221.5 ms