RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SETDB2Q96T68 719 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 CARD14Q9BXL6 1004 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 ZSWIM6Q9HCJ5 1215 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 AXIN2Q9Y2T1 843 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 NPATQ14207 1427 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 TIAM1Q13009 1591 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 PSDA5PKW4 1024 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 ANP32AP39687 249 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 TNNI2P48788 182 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 FAM98CQ17RN3 349 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 CXorf38Q8TB03 319 aa6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 HIRIP3Q9BW71 556 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 IQSEC3Q9UPP2 1182 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 NOP58Q9Y2X3 529 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-209ENST00000456975 LZTS3O60299 673 aaPredicted RBP6□□□□□ -1.45
CCDC88A-209ENST00000456975 RAB11FIP3O75154 756 aa6□□□□□ -1.45
CCDC88A-209ENST00000456975 GIGYF1O75420 1035 aaPredicted RBP6□□□□□ -1.45
CCDC88A-209ENST00000456975 KIF4AO95239 1232 aa6□□□□□ -1.45
CCDC88A-209ENST00000456975 SLC20A2Q08357 652 aa6□□□□□ -1.45
CCDC88A-209ENST00000456975 DNTTIP2Q5QJE6 756 aaKnown RBP6□□□□□ -1.45
CCDC88A-209ENST00000456975 METTL16Q86W50 562 aaKnown RBP6□□□□□ -1.45
CCDC88A-209ENST00000456975 LNPKQ9C0E8 428 aa6□□□□□ -1.45
CCDC88A-209ENST00000456975 RAI14Q9P0K7 980 aa6□□□□□ -1.45
CCDC88A-209ENST00000456975 PCDHGA11Q9Y5H2 935 aa6□□□□□ -1.45
CCDC88A-209ENST00000456975 TCOF1Q13428 1488 aaKnown RBP6□□□□□ -1.45
CCDC88A-209ENST00000456975 EHBP1L1Q8N3D4 1523 aa6□□□□□ -1.45
CCDC88A-209ENST00000456975 PREX2Q70Z35 1606 aa6□□□□□ -1.45
CCDC88A-209ENST00000456975 RNF17Q9BXT8 1623 aaKnown RBP6□□□□□ -1.45
CCDC88A-209ENST00000456975 TOM1O60784 492 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 SSR1P43307 286 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 MCCD1P59942 119 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 PTPRNQ16849 979 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 PDXDC2PQ6P474 469 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 BRICD5Q6PL45 260 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 BORCS6Q96GS4 357 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 UBA5Q9GZZ9 404 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 PNMA2Q9UL42 364 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 WWC3Q9ULE0 1092 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 ABCC1P33527 1531 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 LRRC9Q6ZRR7 1453 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 MTUS2Q5JR59 1369 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 WASHC2AQ641Q2 1341 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 MAGEB6P1A0A0J9YX57 407 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 MAP4K4O95819 1239 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 POTEJP0CG39 1038 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 PAX3P23760 479 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 MAPK8P45983 427 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 ZKSCAN8Q15776 578 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 KMT5BQ4FZB7 885 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 ZFYVE27Q5T4F4 411 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 DMRTA1Q5VZB9 504 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 CACTIN-AS1Q8N1I8 211 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 RNF217Q8TC41 542 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 TMC1Q8TDI8 760 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 ARHGAP9Q9BRR9 750 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 BSDC1Q9NW68 430 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 PRKAG2Q9UGJ0 569 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 PARP2Q9UGN5 583 aa5.99□□□□□ -1.45
CCDC88A-209ENST00000456975 DNMT1P26358 1616 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 ALKQ9UM73 1620 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 NEURL4Q96JN8 1562 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 GPATCH8Q9UKJ3 1502 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 EXOC5O00471 708 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 GTF2F1P35269 517 aaKnown RBP eCLIP5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 POTEEQ6S8J3 1075 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 SCUBE3Q8IX30 993 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 TINF2Q9BSI4 451 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 ACBD3Q9H3P7 528 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 CAPN10Q9HC96 672 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 SYNMO15061 1565 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 MLH3Q9UHC1 1453 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 ERBB3P21860 1342 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 ACTN4O43707 911 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 JUNDP17535 347 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 MPSTP25325 297 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 WEE1P30291 646 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 EFCAB2Q5VUJ9 269 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 ZBTB33Q86T24 672 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 DUSP9Q99956 384 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 PRDM9Q9NQV7 894 aa5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 FEZ2Q9UHY8 353 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-209ENST00000456975 PTPRKQ15262 1439 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 STRCP1A6NGW2 1772 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 CDC42BPAQ5VT25 1732 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 STAU1O95793 577 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 SF3B2Q13435 895 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 ZKSCAN2Q63HK3 967 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 DZIP3Q86Y13 1208 aaKnown RBP5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 MORC4Q8TE76 937 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 RPGRIP1LQ68CZ1 1315 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 CREB3O43889 395 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 FANCCQ00597 558 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 SATB1Q01826 763 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 XPCQ01831 940 aaPredicted RBP5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 CLEC4GQ6UXB4 293 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 CREBRFQ8IUR6 639 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 AFAP1Q8N556 730 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 THAP11Q96EK4 314 aa5.97□□□□□ -1.45
CCDC88A-209ENST00000456975 SAP130Q9H0E3 1048 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms