RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 CCDC88AQ3V6T2 1871 aa23.17■■□□□ 1.3
MSH6-207ENST00000456246 TOMM70O94826 608 aa23.17■■□□□ 1.3
MSH6-207ENST00000456246 AIMP1Q12904 312 aaKnown RBP23.17■■□□□ 1.3
MSH6-207ENST00000456246 C7orf43Q8WVR3 580 aa23.17■■□□□ 1.3
MSH6-207ENST00000456246 NMRK2Q9NPI5 230 aa23.17■■□□□ 1.3
MSH6-207ENST00000456246 HYPKQ9NX55 129 aa23.17■■□□□ 1.3
MSH6-207ENST00000456246 DICER1Q9UPY3 1922 aaKnown RBP23.16■■□□□ 1.3
MSH6-207ENST00000456246 PRELPP51888 382 aa23.16■■□□□ 1.3
MSH6-207ENST00000456246 RPGRQ92834 1020 aaKnown RBP23.16■■□□□ 1.3
MSH6-207ENST00000456246 UTP14AQ9BVJ6 771 aaKnown RBP23.16■■□□□ 1.3
MSH6-207ENST00000456246 C16orf71Q8IYS4 520 aaPredicted RBP23.15■■□□□ 1.3
MSH6-207ENST00000456246 RTKN2Q8IZC4 609 aa23.15■■□□□ 1.3
MSH6-207ENST00000456246 GLTPD2A6NH11 291 aa23.14■■□□□ 1.29
MSH6-207ENST00000456246 HOXA10P31260 410 aaPredicted RBP23.14■■□□□ 1.29
MSH6-207ENST00000456246 TCIRG1Q13488 830 aa23.14■■□□□ 1.29
MSH6-207ENST00000456246 PLBD2Q8NHP8 589 aa23.14■■□□□ 1.29
MSH6-207ENST00000456246 CC2D2BQ6DHV5 1058 aa23.13■■□□□ 1.29
MSH6-207ENST00000456246 DPY19L2Q6NUT2 758 aa23.13■■□□□ 1.29
MSH6-207ENST00000456246 NLRP3Q96P20 1036 aa23.13■■□□□ 1.29
MSH6-207ENST00000456246 FKBP4Q02790 459 aaKnown RBP eCLIP23.12■■□□□ 1.29
MSH6-207ENST00000456246 GRIPAP1Q4V328 841 aa23.12■■□□□ 1.29
MSH6-207ENST00000456246 SLC10A5Q5PT55 438 aa23.12■■□□□ 1.29
MSH6-207ENST00000456246 ANKRD13DQ6ZTN6 518 aa23.12■■□□□ 1.29
MSH6-207ENST00000456246 NLRP10Q86W26 655 aa23.12■■□□□ 1.29
MSH6-207ENST00000456246 RBM46Q8TBY0 533 aaKnown RBP23.12■■□□□ 1.29
MSH6-207ENST00000456246 RBM17Q96I25 401 aaKnown RBP23.12■■□□□ 1.29
MSH6-207ENST00000456246 CRAMP1Q96RY5 1269 aa23.12■■□□□ 1.29
MSH6-207ENST00000456246 HSPA6P17066 643 aa23.11■■□□□ 1.29
MSH6-207ENST00000456246 IL16Q14005 1332 aa23.1■■□□□ 1.29
MSH6-207ENST00000456246 WWC1Q8IX03 1113 aa23.1■■□□□ 1.29
MSH6-207ENST00000456246 SH3TC1Q8TE82 1336 aa23.09■■□□□ 1.29
MSH6-207ENST00000456246 RRAGCQ9HB90 399 aa23.09■■□□□ 1.29
MSH6-207ENST00000456246 VEGFAP15692 232 aaPredicted RBP23.08■■□□□ 1.29
MSH6-207ENST00000456246 GOLGA2Q08379 1002 aa23.08■■□□□ 1.29
MSH6-207ENST00000456246 CCDC30Q5VVM6 783 aa23.08■■□□□ 1.29
MSH6-207ENST00000456246 TRMT112Q9UI30 125 aaKnown RBP23.08■■□□□ 1.29
MSH6-207ENST00000456246 FSTL1Q12841 308 aa23.07■■□□□ 1.28
MSH6-207ENST00000456246 PSMD1Q99460 953 aa23.07■■□□□ 1.28
MSH6-207ENST00000456246 WDR90Q96KV7 1748 aa23.06■■□□□ 1.28
MSH6-207ENST00000456246 ELL2O00472 640 aaPredicted RBP23.06■■□□□ 1.28
MSH6-207ENST00000456246 C8orf58Q8NAV2 365 aa23.06■■□□□ 1.28
MSH6-207ENST00000456246 ISCA1Q9BUE6 129 aa23.06■■□□□ 1.28
MSH6-207ENST00000456246 TMX4Q9H1E5 349 aaPredicted RBP23.06■■□□□ 1.28
MSH6-207ENST00000456246 SNED1Q8TER0 1413 aa23.06■■□□□ 1.28
MSH6-207ENST00000456246 PPEF1O14829 653 aaPredicted RBP23.05■■□□□ 1.28
MSH6-207ENST00000456246 TRIM28Q13263 835 aaKnown RBP23.05■■□□□ 1.28
MSH6-207ENST00000456246 RIC3Q7Z5B4 369 aa23.04■■□□□ 1.28
MSH6-207ENST00000456246 DDX58O95786 925 aaKnown RBP23.03■■□□□ 1.28
MSH6-207ENST00000456246 OLFM4Q6UX06 510 aa23.03■■□□□ 1.28
MSH6-207ENST00000456246 C3orf67Q6ZVT6 689 aa23.03■■□□□ 1.28
MSH6-207ENST00000456246 ZNF277Q9NRM2 450 aaPredicted RBP23.03■■□□□ 1.28
MSH6-207ENST00000456246 IARSP41252 1262 aaKnown RBP23.02■■□□□ 1.28
MSH6-207ENST00000456246 APLP1P51693 650 aa23.02■■□□□ 1.28
MSH6-207ENST00000456246 SYNE4Q8N205 404 aa23.02■■□□□ 1.28
MSH6-207ENST00000456246 SMC1BQ8NDV3 1235 aa23.02■■□□□ 1.28
MSH6-207ENST00000456246 TSR2Q969E8 191 aaKnown RBP23.02■■□□□ 1.28
MSH6-207ENST00000456246 LAMB2P55268 1798 aa23.01■■□□□ 1.27
MSH6-207ENST00000456246 HCLS1P14317 486 aaPredicted RBP23.01■■□□□ 1.27
MSH6-207ENST00000456246 HSP90B1P14625 803 aaKnown RBP23.01■■□□□ 1.27
MSH6-207ENST00000456246 DDX46Q7L014 1031 aaKnown RBP23.01■■□□□ 1.27
MSH6-207ENST00000456246 WDR63Q8IWG1 891 aa23.01■■□□□ 1.27
MSH6-207ENST00000456246 STK31Q9BXU1 1019 aa23.01■■□□□ 1.27
MSH6-207ENST00000456246 PHAXQ9H814 394 aaKnown RBP23.01■■□□□ 1.27
MSH6-207ENST00000456246 ABCC4O15439 1325 aa23.01■■□□□ 1.27
MSH6-207ENST00000456246 BBOX1O75936 387 aa23■■□□□ 1.27
MSH6-207ENST00000456246 TMC4Q7Z404 712 aa23■■□□□ 1.27
MSH6-207ENST00000456246 ATP6V0A2Q9Y487 856 aa23■■□□□ 1.27
MSH6-207ENST00000456246 CEP350Q5VT06 3117 aa23■■□□□ 1.27
MSH6-207ENST00000456246 ATP5J2-PTCD1G3V325 749 aa22.99■■□□□ 1.27
MSH6-207ENST00000456246 TWISTNBQ3B726 338 aaPredicted RBP22.99■■□□□ 1.27
MSH6-207ENST00000456246 TSPYL6Q8N831 410 aa22.99■■□□□ 1.27
MSH6-207ENST00000456246 JDP2Q8WYK2 163 aa22.99■■□□□ 1.27
MSH6-207ENST00000456246 IQCA1LA6NCM1 817 aa22.98■■□□□ 1.27
MSH6-207ENST00000456246 GRAPQ13588 217 aa22.98■■□□□ 1.27
MSH6-207ENST00000456246 GRAPLQ8TC17 118 aaPredicted RBP22.98■■□□□ 1.27
MSH6-207ENST00000456246 L3MBTL3Q96JM7 780 aaPredicted RBP22.98■■□□□ 1.27
MSH6-207ENST00000456246 VPS33BQ9H267 617 aa22.98■■□□□ 1.27
MSH6-207ENST00000456246 DDX60Q8IY21 1712 aaKnown RBP22.98■■□□□ 1.27
MSH6-207ENST00000456246 DDNO94850 711 aaPredicted RBP22.97■■□□□ 1.27
MSH6-207ENST00000456246 CCDC191Q8NCU4 936 aa22.97■■□□□ 1.27
MSH6-207ENST00000456246 FAM89AQ96GI7 184 aa22.97■■□□□ 1.27
MSH6-207ENST00000456246 POTECB2RU33 542 aa22.96■■□□□ 1.27
MSH6-207ENST00000456246 FZD9O00144 591 aa22.96■■□□□ 1.27
MSH6-207ENST00000456246 SF3B3Q15393 1217 aaKnown RBP22.96■■□□□ 1.27
MSH6-207ENST00000456246 FAM9BQ8IZU0 186 aa22.96■■□□□ 1.27
MSH6-207ENST00000456246 ZBTB38Q8NAP3 1195 aaPredicted RBP22.96■■□□□ 1.27
MSH6-207ENST00000456246 SUPT20HQ8NEM7 779 aa22.96■■□□□ 1.27
MSH6-207ENST00000456246 FANCIQ9NVI1 1328 aa22.96■■□□□ 1.27
MSH6-207ENST00000456246 SCN4AP35499 1836 aa22.96■■□□□ 1.27
MSH6-207ENST00000456246 SP8Q8IXZ3 490 aa22.95■■□□□ 1.26
MSH6-207ENST00000456246 MYD88Q99836 296 aa22.95■■□□□ 1.26
MSH6-207ENST00000456246 METTL22Q9BUU2 404 aaPredicted RBP22.95■■□□□ 1.26
MSH6-207ENST00000456246 IRS4O14654 1257 aaPredicted RBP22.94■■□□□ 1.26
MSH6-207ENST00000456246 TCERG1O14776 1098 aaKnown RBP22.94■■□□□ 1.26
MSH6-207ENST00000456246 LARGE2Q8N3Y3 721 aa22.94■■□□□ 1.26
MSH6-207ENST00000456246 ZNF541Q9H0D2 1346 aa22.93■■□□□ 1.26
MSH6-207ENST00000456246 CACNA1FO60840 1977 aa22.93■■□□□ 1.26
MSH6-207ENST00000456246 EIF6P56537 245 aaKnown RBP22.93■■□□□ 1.26
MSH6-207ENST00000456246 KSR2Q6VAB6 950 aa22.93■■□□□ 1.26
MSH6-207ENST00000456246 GPC2Q8N158 579 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms