RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 FAM117AQ9C073 453 aa11.23□□□□□ -0.61
SYNE1-214ENST00000454018 PNPLA7Q6ZV29 1317 aa11.22□□□□□ -0.61
SYNE1-214ENST00000454018 PDIA6Q15084 440 aa11.22□□□□□ -0.61
SYNE1-214ENST00000454018 ALDH1L2Q3SY69 923 aa11.22□□□□□ -0.61
SYNE1-214ENST00000454018 HYPKQ9NX55 129 aa11.22□□□□□ -0.61
SYNE1-214ENST00000454018 A0A087WZG4 1122 aa11.21□□□□□ -0.61
SYNE1-214ENST00000454018 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.21□□□□□ -0.61
SYNE1-214ENST00000454018 PHF14O94880 888 aa11.21□□□□□ -0.61
SYNE1-214ENST00000454018 MYL6BP14649 208 aa11.21□□□□□ -0.61
SYNE1-214ENST00000454018 PIP4K2AP48426 406 aaPredicted RBP11.21□□□□□ -0.61
SYNE1-214ENST00000454018 PROSER3Q2NL68 480 aa11.21□□□□□ -0.61
SYNE1-214ENST00000454018 LRP10Q7Z4F1 713 aa11.21□□□□□ -0.61
SYNE1-214ENST00000454018 ZNF330Q9Y3S2 320 aaPredicted RBP11.21□□□□□ -0.61
SYNE1-214ENST00000454018 LAMB2P55268 1798 aa11.21□□□□□ -0.62
SYNE1-214ENST00000454018 TRAPPC3LQ5T215 181 aa11.2□□□□□ -0.62
SYNE1-214ENST00000454018 AMIGO3Q86WK7 504 aa11.2□□□□□ -0.62
SYNE1-214ENST00000454018 MYH3P11055 1940 aa11.2□□□□□ -0.62
SYNE1-214ENST00000454018 KIF16BQ96L93 1317 aa11.2□□□□□ -0.62
SYNE1-214ENST00000454018 NRXN2Q9P2S2 1712 aa11.2□□□□□ -0.62
SYNE1-214ENST00000454018 ANXA1P04083 346 aa11.19□□□□□ -0.62
SYNE1-214ENST00000454018 SMC4Q9NTJ3 1288 aa11.19□□□□□ -0.62
SYNE1-214ENST00000454018 USP42Q9H9J4 1324 aaKnown RBP11.19□□□□□ -0.62
SYNE1-214ENST00000454018 PXDNLA1KZ92 1463 aa11.19□□□□□ -0.62
SYNE1-214ENST00000454018 RFC4P35249 363 aa11.19□□□□□ -0.62
SYNE1-214ENST00000454018 RARSP54136 660 aaKnown RBP11.19□□□□□ -0.62
SYNE1-214ENST00000454018 KIF6Q6ZMV9 814 aa11.19□□□□□ -0.62
SYNE1-214ENST00000454018 DZIP3Q86Y13 1208 aaKnown RBP11.19□□□□□ -0.62
SYNE1-214ENST00000454018 SSH1Q8WYL5 1049 aa11.19□□□□□ -0.62
SYNE1-214ENST00000454018 KIF13BQ9NQT8 1826 aa11.18□□□□□ -0.62
SYNE1-214ENST00000454018 TCERG1O14776 1098 aaKnown RBP11.18□□□□□ -0.62
SYNE1-214ENST00000454018 GPR37O15354 613 aa11.18□□□□□ -0.62
SYNE1-214ENST00000454018 ZPR1O75312 459 aa11.18□□□□□ -0.62
SYNE1-214ENST00000454018 DDX58O95786 925 aaKnown RBP11.18□□□□□ -0.62
SYNE1-214ENST00000454018 FLIIQ13045 1269 aa11.18□□□□□ -0.62
SYNE1-214ENST00000454018 R3HDM1Q15032 1099 aaKnown RBP11.18□□□□□ -0.62
SYNE1-214ENST00000454018 COL23A1Q86Y22 540 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-214ENST00000454018 XAGE3Q8WTP9 111 aa11.18□□□□□ -0.62
SYNE1-214ENST00000454018 NARFQ9UHQ1 456 aa11.18□□□□□ -0.62
SYNE1-214ENST00000454018 ATP10DQ9P241 1426 aa11.18□□□□□ -0.62
SYNE1-214ENST00000454018 PTPRCP08575 1304 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 MAP3K15Q6ZN16 1313 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 LRP5O75197 1615 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 DPYSL4O14531 572 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 PPP1R15BQ5SWA1 713 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 COPS6Q7L5N1 327 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 MRPL50Q8N5N7 158 aaKnown RBP11.17□□□□□ -0.62
SYNE1-214ENST00000454018 SLC16A10Q8TF71 515 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 BCL2L13Q9BXK5 485 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 PHAXQ9H814 394 aaKnown RBP11.17□□□□□ -0.62
SYNE1-214ENST00000454018 ZNF652Q9Y2D9 606 aa11.17□□□□□ -0.62
SYNE1-214ENST00000454018 ERVV-1B6SEH8 477 aa11.16□□□□□ -0.62
SYNE1-214ENST00000454018 CAMTA2O94983 1202 aa11.16□□□□□ -0.62
SYNE1-214ENST00000454018 PRKAR2AP13861 404 aaKnown RBP11.16□□□□□ -0.62
SYNE1-214ENST00000454018 AIMP1Q12904 312 aaKnown RBP11.16□□□□□ -0.62
SYNE1-214ENST00000454018 FKBP5Q13451 457 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-214ENST00000454018 TTLL7Q6ZT98 887 aa11.16□□□□□ -0.62
SYNE1-214ENST00000454018 SMIM5Q71RC9 77 aa11.16□□□□□ -0.62
SYNE1-214ENST00000454018 PLBD2Q8NHP8 589 aa11.16□□□□□ -0.62
SYNE1-214ENST00000454018 RCAN3Q9UKA8 241 aa11.16□□□□□ -0.62
SYNE1-214ENST00000454018 TBC1D2BQ9UPU7 963 aa11.16□□□□□ -0.62
SYNE1-214ENST00000454018 ADCY9O60503 1353 aa11.16□□□□□ -0.62
SYNE1-214ENST00000454018 PSDA5PKW4 1024 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-214ENST00000454018 CLEC4GQ6UXB4 293 aa11.15□□□□□ -0.62
SYNE1-214ENST00000454018 EMILIN3Q9NT22 766 aa11.15□□□□□ -0.62
SYNE1-214ENST00000454018 ANKRD31Q8N7Z5 1873 aa11.15□□□□□ -0.62
SYNE1-214ENST00000454018 DDX60Q8IY21 1712 aaKnown RBP11.15□□□□□ -0.62
SYNE1-214ENST00000454018 GYS1P13807 737 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 USPL1Q5W0Q7 1092 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 GIGYF2Q6Y7W6 1299 aaKnown RBP11.14□□□□□ -0.63
SYNE1-214ENST00000454018 ANKRD13DQ6ZTN6 518 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 G2E3Q7L622 706 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 ZBTB3Q9H5J0 574 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 SRP68Q9UHB9 627 aaKnown RBP11.14□□□□□ -0.63
SYNE1-214ENST00000454018 DLEC1Q9Y238 1755 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 HSP90AB3PQ58FF7 597 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 KSR2Q6VAB6 950 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 NLGN1Q8N2Q7 840 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 MTFR1LQ9H019 292 aa11.14□□□□□ -0.63
SYNE1-214ENST00000454018 CARMIL3Q8ND23 1372 aa11.13□□□□□ -0.63
SYNE1-214ENST00000454018 IBTKQ9P2D0 1353 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-214ENST00000454018 PI4KAP2A4QPH2 592 aa11.13□□□□□ -0.63
SYNE1-214ENST00000454018 IPO8O15397 1037 aaKnown RBP11.13□□□□□ -0.63
SYNE1-214ENST00000454018 BCAR3O75815 825 aa11.13□□□□□ -0.63
SYNE1-214ENST00000454018 RIC3Q7Z5B4 369 aa11.13□□□□□ -0.63
SYNE1-214ENST00000454018 PI4KAP1Q8N8J0 262 aa11.13□□□□□ -0.63
SYNE1-214ENST00000454018 ARHGAP45Q92619 1136 aa11.13□□□□□ -0.63
SYNE1-214ENST00000454018 PDGFDQ9GZP0 370 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-214ENST00000454018 BCL2L12Q9HB09 334 aa11.13□□□□□ -0.63
SYNE1-214ENST00000454018 MAP3K2Q9Y2U5 619 aa11.13□□□□□ -0.63
SYNE1-214ENST00000454018 CACNA1SQ13698 1873 aa11.12□□□□□ -0.63
SYNE1-214ENST00000454018 APBB1O00213 710 aa11.12□□□□□ -0.63
SYNE1-214ENST00000454018 NEXNQ0ZGT2 675 aa11.12□□□□□ -0.63
SYNE1-214ENST00000454018 HLFQ16534 295 aa11.12□□□□□ -0.63
SYNE1-214ENST00000454018 DNAAF4Q8WXU2 420 aa11.12□□□□□ -0.63
SYNE1-214ENST00000454018 API5Q9BZZ5 524 aaKnown RBP11.12□□□□□ -0.63
SYNE1-214ENST00000454018 BRCA1P38398 1863 aaKnown RBP11.11□□□□□ -0.63
SYNE1-214ENST00000454018 ZKSCAN2Q63HK3 967 aa11.11□□□□□ -0.63
SYNE1-214ENST00000454018 METTL22Q9BUU2 404 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-214ENST00000454018 GPHNQ9NQX3 736 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-214ENST00000454018 NOB1Q9ULX3 412 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms