RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	DZIP3	Q86Y13	1208 aa	Known RBP	11.45	□□□□□ -0.58
RFX3-209	ENST00000451859	PNN	Q9H307	717 aa	Known RBP	11.45	□□□□□ -0.58
RFX3-209	ENST00000451859	TIAM2	Q8IVF5	1701 aa		11.45	□□□□□ -0.58
RFX3-209	ENST00000451859	ARFGEF2	Q9Y6D5	1785 aa		11.44	□□□□□ -0.58
RFX3-209	ENST00000451859	GOLGA2	Q08379	1002 aa		11.44	□□□□□ -0.58
RFX3-209	ENST00000451859	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.44	□□□□□ -0.58
RFX3-209	ENST00000451859	RRP7A	Q9Y3A4	280 aa	Known RBP	11.44	□□□□□ -0.58
RFX3-209	ENST00000451859	SLX4	Q8IY92	1834 aa		11.44	□□□□□ -0.58
RFX3-209	ENST00000451859	DICER1	Q9UPY3	1922 aa	Known RBP	11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	CAMTA2	O94983	1202 aa		11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	PSEN1	P49768	467 aa		11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	RIPK4	P57078	832 aa		11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	C1QTNF8	P60827	252 aa		11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	GSE1	Q14687	1217 aa		11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	WDR43	Q15061	677 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	NEUROD2	Q15784	382 aa		11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	C2CD5	Q86YS7	1000 aa		11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	NGEF	Q8N5V2	710 aa		11.43	□□□□□ -0.58
RFX3-209	ENST00000451859	FER1L6	Q2WGJ9	1857 aa		11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	ANKRD36C	Q5JPF3	1778 aa		11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	SENP3-EIF4A1	A0A087X0R7	540 aa		11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	NBPF26	B4DH59	902 aa		11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	DPY19L2	Q6NUT2	758 aa		11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	NBPF10	Q6P3W6	841 aa	Known RBP	11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	NBPF15	Q8N660	670 aa		11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	PNISR	Q8TF01	805 aa	Known RBP	11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	SETDB2	Q96T68	719 aa		11.42	□□□□□ -0.58
RFX3-209	ENST00000451859	FAM177B	A6PVY3	158 aa		11.41	□□□□□ -0.58
RFX3-209	ENST00000451859		H0YIN7	160 aa		11.41	□□□□□ -0.58
RFX3-209	ENST00000451859	HOXB3	P14651	431 aa	Predicted RBP	11.41	□□□□□ -0.58
RFX3-209	ENST00000451859	TMPO	P42166	694 aa	Known RBP	11.41	□□□□□ -0.58
RFX3-209	ENST00000451859	PRR5L	Q6MZQ0	368 aa		11.41	□□□□□ -0.58
RFX3-209	ENST00000451859	CNBD1	Q8NA66	436 aa		11.41	□□□□□ -0.58
RFX3-209	ENST00000451859	TSPYL4	Q9UJ04	414 aa		11.41	□□□□□ -0.58
RFX3-209	ENST00000451859	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.4	□□□□□ -0.58
RFX3-209	ENST00000451859	MYL6B	P14649	208 aa		11.4	□□□□□ -0.58
RFX3-209	ENST00000451859	EIF4A1	P60842	406 aa	Known RBP	11.4	□□□□□ -0.58
RFX3-209	ENST00000451859	RASSF7	Q02833	373 aa		11.4	□□□□□ -0.58
RFX3-209	ENST00000451859	C9orf131	Q5VYM1	1079 aa		11.4	□□□□□ -0.58
RFX3-209	ENST00000451859	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.4	□□□□□ -0.58
RFX3-209	ENST00000451859	ZNF652	Q9Y2D9	606 aa		11.4	□□□□□ -0.58
RFX3-209	ENST00000451859	ST5	P78524	1137 aa		11.39	□□□□□ -0.59
RFX3-209	ENST00000451859	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.39	□□□□□ -0.59
RFX3-209	ENST00000451859	TTLL6	Q8N841	843 aa		11.39	□□□□□ -0.59
RFX3-209	ENST00000451859	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.39	□□□□□ -0.59
RFX3-209	ENST00000451859	RNF181	Q9P0P0	153 aa		11.39	□□□□□ -0.59
RFX3-209	ENST00000451859	FBXO3	Q9UK99	471 aa		11.39	□□□□□ -0.59
RFX3-209	ENST00000451859	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.39	□□□□□ -0.59
RFX3-209	ENST00000451859	LAS1L	Q9Y4W2	734 aa	Known RBP	11.39	□□□□□ -0.59
RFX3-209	ENST00000451859	LMOD3	Q0VAK6	560 aa		11.38	□□□□□ -0.59
RFX3-209	ENST00000451859	HLF	Q16534	295 aa		11.38	□□□□□ -0.59
RFX3-209	ENST00000451859	ADAMTS8	Q9UP79	889 aa		11.38	□□□□□ -0.59
RFX3-209	ENST00000451859	LAMB2	P55268	1798 aa		11.38	□□□□□ -0.59
RFX3-209	ENST00000451859	EIF2S2	P20042	333 aa	Known RBP	11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	PDE6B	P35913	854 aa		11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	KIF6	Q6ZMV9	814 aa		11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	TTLL7	Q6ZT98	887 aa		11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	NECTIN2	Q92692	538 aa		11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	RUNDC1	Q96C34	613 aa		11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	BRIP1	Q9BX63	1249 aa		11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	ZBTB3	Q9H5J0	574 aa		11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	CEP350	Q5VT06	3117 aa		11.37	□□□□□ -0.59
RFX3-209	ENST00000451859	C21orf2	O43822	256 aa		11.36	□□□□□ -0.59
RFX3-209	ENST00000451859	ANXA1	P04083	346 aa		11.36	□□□□□ -0.59
RFX3-209	ENST00000451859	GPT	P24298	496 aa		11.36	□□□□□ -0.59
RFX3-209	ENST00000451859	CLEC4G	Q6UXB4	293 aa		11.36	□□□□□ -0.59
RFX3-209	ENST00000451859	NMRK2	Q9NPI5	230 aa		11.36	□□□□□ -0.59
RFX3-209	ENST00000451859	GTF2E1	P29083	439 aa	Predicted RBP	11.35	□□□□□ -0.59
RFX3-209	ENST00000451859	ZEB1	P37275	1124 aa	Predicted RBP	11.35	□□□□□ -0.59
RFX3-209	ENST00000451859	KRT24	Q2M2I5	525 aa		11.35	□□□□□ -0.59
RFX3-209	ENST00000451859	TAF1	P21675	1872 aa		11.35	□□□□□ -0.59
RFX3-209	ENST00000451859	MAP3K15	Q6ZN16	1313 aa		11.35	□□□□□ -0.59
RFX3-209	ENST00000451859	NFKBIE	O00221	500 aa		11.34	□□□□□ -0.59
RFX3-209	ENST00000451859	KIF3C	O14782	793 aa		11.34	□□□□□ -0.59
RFX3-209	ENST00000451859	PROSER3	Q2NL68	480 aa		11.34	□□□□□ -0.59
RFX3-209	ENST00000451859	NUTM1	Q86Y26	1132 aa		11.34	□□□□□ -0.59
RFX3-209	ENST00000451859	PDZRN3	Q9UPQ7	1066 aa		11.34	□□□□□ -0.59
RFX3-209	ENST00000451859	ABCC12	Q96J65	1359 aa		11.33	□□□□□ -0.6
RFX3-209	ENST00000451859	HOXB1	P14653	301 aa	Predicted RBP	11.33	□□□□□ -0.6
RFX3-209	ENST00000451859	LMNB1	P20700	586 aa		11.33	□□□□□ -0.6
RFX3-209	ENST00000451859	VASP	P50552	380 aa	Predicted RBP	11.33	□□□□□ -0.6
RFX3-209	ENST00000451859	PRELP	P51888	382 aa		11.33	□□□□□ -0.6
RFX3-209	ENST00000451859	PRPF40B	Q6NWY9	871 aa	Known RBP	11.33	□□□□□ -0.6
RFX3-209	ENST00000451859	TPTE2	Q6XPS3	522 aa		11.33	□□□□□ -0.6
RFX3-209	ENST00000451859	MASTL	Q96GX5	879 aa		11.33	□□□□□ -0.6
RFX3-209	ENST00000451859	APAF1	O14727	1248 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	SRGN	P10124	158 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	AIMP1	Q12904	312 aa	Known RBP	11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	PDAP1	Q13442	181 aa	Known RBP	11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	STYK1	Q6J9G0	422 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	CNKSR1	Q969H4	720 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	ZNF428	Q96B54	188 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	BOLA1	Q9Y3E2	137 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	ERBB4	Q15303	1308 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	UBN2	Q6ZU65	1347 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	KDM2B	Q8NHM5	1336 aa		11.32	□□□□□ -0.6
RFX3-209	ENST00000451859	ERVV-1	B6SEH8	477 aa		11.31	□□□□□ -0.6
RFX3-209	ENST00000451859	ERFE	Q4G0M1	354 aa		11.31	□□□□□ -0.6
RFX3-209	ENST00000451859	CCDC184	Q52MB2	194 aa		11.31	□□□□□ -0.6
RFX3-209	ENST00000451859	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.31	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms