RNA–Protein interactions for RNA: ENST00000448572.1

SSBP3-209, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 454 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-209ENST00000448572 PPP1R42Q7Z4L9 355 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 NIM1KQ8IY84 436 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 LARGE2Q8N3Y3 721 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 GJA3Q9Y6H8 435 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 PCNTO95613 3336 aa13.66□□□□□ -0.22
SSBP3-209ENST00000448572 HOXA10P31260 410 aaPredicted RBP13.65□□□□□ -0.22
SSBP3-209ENST00000448572 PIP4K2AP48426 406 aaPredicted RBP13.65□□□□□ -0.22
SSBP3-209ENST00000448572 PARP10Q53GL7 1025 aa13.65□□□□□ -0.22
SSBP3-209ENST00000448572 MAP1SQ66K74 1059 aaPredicted RBP13.65□□□□□ -0.22
SSBP3-209ENST00000448572 PAXIP1Q6ZW49 1069 aaPredicted RBP13.65□□□□□ -0.22
SSBP3-209ENST00000448572 CRAMP1Q96RY5 1269 aa13.65□□□□□ -0.22
SSBP3-209ENST00000448572 DDX21Q9NR30 783 aaKnown RBP eCLIP13.65□□□□□ -0.22
SSBP3-209ENST00000448572 ERBB4Q15303 1308 aa13.64□□□□□ -0.23
SSBP3-209ENST00000448572 MAP3K15Q6ZN16 1313 aa13.64□□□□□ -0.23
SSBP3-209ENST00000448572 NBPF26B4DH59 902 aa13.64□□□□□ -0.23
SSBP3-209ENST00000448572 NBPF10Q6P3W6 841 aaKnown RBP13.64□□□□□ -0.23
SSBP3-209ENST00000448572 NBPF15Q8N660 670 aa13.64□□□□□ -0.23
SSBP3-209ENST00000448572 MAP2K2P36507 400 aa13.63□□□□□ -0.23
SSBP3-209ENST00000448572 NLRP3Q96P20 1036 aa13.63□□□□□ -0.23
SSBP3-209ENST00000448572 CDHR2Q9BYE9 1310 aa13.63□□□□□ -0.23
SSBP3-209ENST00000448572 PRAMEF22A3QJZ6 481 aa13.62□□□□□ -0.23
SSBP3-209ENST00000448572 PPEF1O14829 653 aaPredicted RBP13.62□□□□□ -0.23
SSBP3-209ENST00000448572 HSPA8P11142 646 aaKnown RBP13.62□□□□□ -0.23
SSBP3-209ENST00000448572 CAPNS2Q96L46 248 aa13.62□□□□□ -0.23
SSBP3-209ENST00000448572 ADARB2Q9NS39 739 aaKnown RBP13.62□□□□□ -0.23
SSBP3-209ENST00000448572 PPIP5K2O43314 1243 aa13.61□□□□□ -0.23
SSBP3-209ENST00000448572 PPP2R1AP30153 589 aa13.61□□□□□ -0.23
SSBP3-209ENST00000448572 HLFQ16534 295 aa13.61□□□□□ -0.23
SSBP3-209ENST00000448572 HSP90AB3PQ58FF7 597 aa13.61□□□□□ -0.23
SSBP3-209ENST00000448572 ABHD8Q96I13 439 aa13.61□□□□□ -0.23
SSBP3-209ENST00000448572 GPR101Q96P66 508 aaPredicted RBP13.61□□□□□ -0.23
SSBP3-209ENST00000448572 RRP7AQ9Y3A4 280 aaKnown RBP13.61□□□□□ -0.23
SSBP3-209ENST00000448572 MAPK8IP3Q9UPT6 1336 aa13.61□□□□□ -0.23
SSBP3-209ENST00000448572 TNIP1Q15025 636 aa13.6□□□□□ -0.23
SSBP3-209ENST00000448572 GIGYF2Q6Y7W6 1299 aaKnown RBP13.6□□□□□ -0.23
SSBP3-209ENST00000448572 NUTM1Q86Y26 1132 aa13.6□□□□□ -0.23
SSBP3-209ENST00000448572 NGEFQ8N5V2 710 aa13.6□□□□□ -0.23
SSBP3-209ENST00000448572 ZC3H15Q8WU90 426 aaKnown RBP13.6□□□□□ -0.23
SSBP3-209ENST00000448572 HHIPL1Q96JK4 782 aa13.6□□□□□ -0.23
SSBP3-209ENST00000448572 CACNA1SQ13698 1873 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 ADAMTSL1Q8N6G6 1762 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 BBOX1O75936 387 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 SCNN1DP51172 638 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 DCTN1Q14203 1278 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 OLFM4Q6UX06 510 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 TMC4Q7Z404 712 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 ZNRF3Q9ULT6 936 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 ATP6V0A2Q9Y487 856 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 TLL2Q9Y6L7 1015 aa13.59□□□□□ -0.23
SSBP3-209ENST00000448572 MYL6BP14649 208 aa13.58□□□□□ -0.24
SSBP3-209ENST00000448572 GPTP24298 496 aa13.58□□□□□ -0.24
SSBP3-209ENST00000448572 MLLT1Q03111 559 aaPredicted RBP13.58□□□□□ -0.24
SSBP3-209ENST00000448572 GRM1Q13255 1194 aa13.58□□□□□ -0.24
SSBP3-209ENST00000448572 UTP14AQ9BVJ6 771 aaKnown RBP13.58□□□□□ -0.24
SSBP3-209ENST00000448572 BCL2L13Q9BXK5 485 aa13.58□□□□□ -0.24
SSBP3-209ENST00000448572 ZBTB3Q9H5J0 574 aa13.58□□□□□ -0.24
SSBP3-209ENST00000448572 GPRC5DQ9NZD1 345 aa13.58□□□□□ -0.24
SSBP3-209ENST00000448572 ABCC12Q96J65 1359 aa13.58□□□□□ -0.24
SSBP3-209ENST00000448572 EPS15P42566 896 aa13.57□□□□□ -0.24
SSBP3-209ENST00000448572 EIF4A1P60842 406 aaKnown RBP13.57□□□□□ -0.24
SSBP3-209ENST00000448572 LMOD3Q0VAK6 560 aa13.57□□□□□ -0.24
SSBP3-209ENST00000448572 DPP8Q6V1X1 898 aaPredicted RBP13.57□□□□□ -0.24
SSBP3-209ENST00000448572 ZNF34Q8IZ26 560 aa13.57□□□□□ -0.24
SSBP3-209ENST00000448572 BABAM1Q9NWV8 329 aa13.57□□□□□ -0.24
SSBP3-209ENST00000448572 SNED1Q8TER0 1413 aa13.56□□□□□ -0.24
SSBP3-209ENST00000448572 NTSR2O95665 410 aa13.56□□□□□ -0.24
SSBP3-209ENST00000448572 BRPF1P55201 1214 aaPredicted RBP13.56□□□□□ -0.24
SSBP3-209ENST00000448572 NFE2L2Q16236 605 aa13.56□□□□□ -0.24
SSBP3-209ENST00000448572 SUSD4Q5VX71 490 aa13.56□□□□□ -0.24
SSBP3-209ENST00000448572 CIAPIN1Q6FI81 312 aa13.56□□□□□ -0.24
SSBP3-209ENST00000448572 DDX46Q7L014 1031 aaKnown RBP13.56□□□□□ -0.24
SSBP3-209ENST00000448572 CDC37L1Q7L3B6 337 aa13.56□□□□□ -0.24
SSBP3-209ENST00000448572 LAMB4A4D0S4 1761 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 CCDC85CA6NKD9 419 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 H7C1D1 291 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 CELF2O95319 508 aaKnown RBP13.55□□□□□ -0.24
SSBP3-209ENST00000448572 NOGQ13253 232 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 SLC10A5Q5PT55 438 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 CYP4F22Q6NT55 531 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 TTLL7Q6ZT98 887 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 SP8Q8IXZ3 490 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 MPNDQ8N594 471 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 RTFDC1Q9BY42 306 aaPredicted RBP13.55□□□□□ -0.24
SSBP3-209ENST00000448572 MIS18AQ9NYP9 233 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 UBN2Q6ZU65 1347 aa13.55□□□□□ -0.24
SSBP3-209ENST00000448572 TCERG1O14776 1098 aaKnown RBP13.54□□□□□ -0.24
SSBP3-209ENST00000448572 KIAA2012Q0VF49 1180 aa13.54□□□□□ -0.24
SSBP3-209ENST00000448572 AOC3Q16853 763 aa13.54□□□□□ -0.24
SSBP3-209ENST00000448572 FAM161AQ3B820 660 aa13.54□□□□□ -0.24
SSBP3-209ENST00000448572 SAPCD2Q86UD0 394 aa13.54□□□□□ -0.24
SSBP3-209ENST00000448572 TSPYL4Q9UJ04 414 aa13.54□□□□□ -0.24
SSBP3-209ENST00000448572 HSP90B1P14625 803 aaKnown RBP13.53□□□□□ -0.24
SSBP3-209ENST00000448572 CXCL9Q07325 125 aa13.53□□□□□ -0.24
SSBP3-209ENST00000448572 CST9Q5W186 159 aa13.53□□□□□ -0.24
SSBP3-209ENST00000448572 PGAP2Q9UHJ9 254 aa13.53□□□□□ -0.24
SSBP3-209ENST00000448572 SLC34A2O95436 690 aa13.52□□□□□ -0.25
SSBP3-209ENST00000448572 RGS19P49795 217 aa13.52□□□□□ -0.25
SSBP3-209ENST00000448572 GMPSP49915 693 aaPredicted RBP13.52□□□□□ -0.25
SSBP3-209ENST00000448572 SH3TC1Q8TE82 1336 aa13.52□□□□□ -0.25
SSBP3-209ENST00000448572 THSD7BQ9C0I4 1608 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms