RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 PFDN1O60925 122 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 NBPF11Q86T75 865 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 MKL2Q9ULH7 1088 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 RIOK3O14730 519 aaKnown RBP10.18□□□□□ -0.78
NIPBL-202ENST00000448238 CYLC1P35663 651 aaPredicted RBP10.18□□□□□ -0.78
NIPBL-202ENST00000448238 DNA2P51530 1060 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 PLIN1O60240 522 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 MTIF2P46199 727 aaKnown RBP10.18□□□□□ -0.78
NIPBL-202ENST00000448238 DIXDC1Q155Q3 683 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 GCC1Q96CN9 775 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 VAV2P52735 878 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 GSTA5Q7RTV2 222 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 CTAGE1Q96RT6 745 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 CSRNP2Q9H175 543 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 EVC2Q86UK5 1308 aa10.18□□□□□ -0.78
NIPBL-202ENST00000448238 HSPA1LP34931 641 aa10.17□□□□□ -0.78
NIPBL-202ENST00000448238 ZNF354CQ86Y25 554 aa10.17□□□□□ -0.78
NIPBL-202ENST00000448238 CCDC117Q8IWD4 279 aaPredicted RBP10.17□□□□□ -0.78
NIPBL-202ENST00000448238 HELBQ8NG08 1087 aaPredicted RBP10.17□□□□□ -0.78
NIPBL-202ENST00000448238 EIF3DO15371 548 aaKnown RBP eCLIP10.17□□□□□ -0.78
NIPBL-202ENST00000448238 CCDC124Q96CT7 223 aaKnown RBP10.17□□□□□ -0.78
NIPBL-202ENST00000448238 MORC4Q8TE76 937 aa10.17□□□□□ -0.78
NIPBL-202ENST00000448238 CUL5Q93034 780 aa10.17□□□□□ -0.78
NIPBL-202ENST00000448238 A0A087WZG4 1122 aa10.17□□□□□ -0.78
NIPBL-202ENST00000448238 LUC7L3O95232 432 aaKnown RBP10.17□□□□□ -0.78
NIPBL-202ENST00000448238 INF2Q27J81 1249 aa10.17□□□□□ -0.78
NIPBL-202ENST00000448238 PPFIA1Q13136 1202 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 FAF1Q9UNN5 650 aaPredicted RBP10.16□□□□□ -0.78
NIPBL-202ENST00000448238 COPG1Q9Y678 874 aaKnown RBP10.16□□□□□ -0.78
NIPBL-202ENST00000448238 GFAPP14136 432 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 HAUS7Q99871 368 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 DRC3Q9H069 523 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 CTAGE15A4D2H0 777 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 MLECQ14165 292 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 E9PMD0 336 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 SERPINI2O75830 405 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 BAG4O95429 457 aaKnown RBP10.16□□□□□ -0.78
NIPBL-202ENST00000448238 CTAGE8P0CG41 777 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 MUM1L1Q5H9M0 696 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 CTAGE4Q8IX94 777 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 USP6NLQ92738 828 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 TRIM55Q9BYV6 548 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 CALML4Q96GE6 196 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 CCDC94Q9BW85 323 aaPredicted RBP10.16□□□□□ -0.78
NIPBL-202ENST00000448238 CNNM1Q9NRU3 951 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 SPECC1L-ADORA2AF8WAN1 911 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 UBA5Q9GZZ9 404 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 FAM76AQ8TAV0 307 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 CCDC12Q8WUD4 166 aaPredicted RBP10.16□□□□□ -0.78
NIPBL-202ENST00000448238 TMOD2Q9NZR1 351 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 TSPYL4Q9UJ04 414 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 RRP7AQ9Y3A4 280 aaKnown RBP10.16□□□□□ -0.78
NIPBL-202ENST00000448238 ARHGAP35Q9NRY4 1499 aa10.16□□□□□ -0.78
NIPBL-202ENST00000448238 U3KPZ7 1027 aaPredicted RBP10.15□□□□□ -0.78
NIPBL-202ENST00000448238 RILPL1Q5EBL4 403 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 CCDC30Q5VVM6 783 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 SYCP3Q8IZU3 236 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 SDCCAG3Q96C92 435 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 FCHSD2O94868 740 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 EXOC6Q8TAG9 804 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 ARHGEF2Q92974 986 aaKnown RBP10.15□□□□□ -0.78
NIPBL-202ENST00000448238 TCP11L1Q9NUJ3 509 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 SCAPERQ9BY12 1400 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 ZEB2O60315 1214 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 SURF6O75683 361 aaKnown RBP10.15□□□□□ -0.78
NIPBL-202ENST00000448238 PHLDB3Q6NSJ2 640 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 KLHL34Q8N239 644 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 IL27Q8NEV9 243 aa10.15□□□□□ -0.78
NIPBL-202ENST00000448238 PUF60Q9UHX1 559 aaKnown RBP10.15□□□□□ -0.78
NIPBL-202ENST00000448238 MAP2K2P36507 400 aa10.15□□□□□ -0.79
NIPBL-202ENST00000448238 KDM4AO75164 1064 aa10.15□□□□□ -0.79
NIPBL-202ENST00000448238 PHEXP78562 749 aa10.15□□□□□ -0.79
NIPBL-202ENST00000448238 STX1AQ16623 288 aa10.15□□□□□ -0.79
NIPBL-202ENST00000448238 SELENOSQ9BQE4 189 aa10.15□□□□□ -0.79
NIPBL-202ENST00000448238 CEP104O60308 925 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 CCDC65Q8IXS2 484 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 WASHC2CQ9Y4E1 1318 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 GNG11P61952 73 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 UTP14CQ5TAP6 766 aaKnown RBP10.14□□□□□ -0.79
NIPBL-202ENST00000448238 WDR78Q5VTH9 848 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 LCA5Q86VQ0 697 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 RAPGEF4Q8WZA2 1011 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 MAN1A2O60476 641 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 RIPK4P57078 832 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 LMNAP02545 664 aaKnown RBP10.14□□□□□ -0.79
NIPBL-202ENST00000448238 GNAI2P04899 355 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 TMCO4Q5TGY1 634 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 TCERG1LQ5VWI1 586 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 GCKP35557 465 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 IMPG2Q9BZV3 1241 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 BAG5Q9UL15 447 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 A0A1B0GW55 424 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 DUX4L2P0CJ85 424 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 DUX4L3P0CJ86 424 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 DUX4L4P0CJ87 422 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 DUX4L5P0CJ88 424 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 DUX4L6P0CJ89 424 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 DUX4L7P0CJ90 424 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 DUX4Q9UBX2 424 aa10.14□□□□□ -0.79
NIPBL-202ENST00000448238 SYCE3A1L190 88 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms