RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 RIC1Q4ADV7 1423 aa20.96■□□□□ 0.95
SF3A1-204ENST00000447376 UTRNP46939 3433 aa20.96■□□□□ 0.95
SF3A1-204ENST00000447376 ALDH1B1P30837 517 aa20.96■□□□□ 0.95
SF3A1-204ENST00000447376 NEXNQ0ZGT2 675 aa20.96■□□□□ 0.95
SF3A1-204ENST00000447376 SOGA3Q5TF21 947 aa20.96■□□□□ 0.95
SF3A1-204ENST00000447376 NLRP3Q96P20 1036 aa20.96■□□□□ 0.95
SF3A1-204ENST00000447376 TCERG1O14776 1098 aaKnown RBP20.95■□□□□ 0.94
SF3A1-204ENST00000447376 VAMP4O75379 141 aa20.95■□□□□ 0.94
SF3A1-204ENST00000447376 HSP90B1P14625 803 aaKnown RBP20.95■□□□□ 0.94
SF3A1-204ENST00000447376 HNRNPUQ00839 825 aaKnown RBP eCLIP20.95■□□□□ 0.94
SF3A1-204ENST00000447376 SPINK5Q9NQ38 1064 aaPredicted RBP20.95■□□□□ 0.94
SF3A1-204ENST00000447376 SH3TC1Q8TE82 1336 aa20.95■□□□□ 0.94
SF3A1-204ENST00000447376 COL11A2P13942 1736 aaPredicted RBP20.95■□□□□ 0.94
SF3A1-204ENST00000447376 ARFGEF2Q9Y6D5 1785 aa20.95■□□□□ 0.94
SF3A1-204ENST00000447376 KLRG2A4D1S0 409 aaPredicted RBP20.94■□□□□ 0.94
SF3A1-204ENST00000447376 ABCC12Q96J65 1359 aa20.94■□□□□ 0.94
SF3A1-204ENST00000447376 ATP5J2-PTCD1G3V325 749 aa20.93■□□□□ 0.94
SF3A1-204ENST00000447376 PRPF40BQ6NWY9 871 aaKnown RBP20.93■□□□□ 0.94
SF3A1-204ENST00000447376 KSR2Q6VAB6 950 aa20.93■□□□□ 0.94
SF3A1-204ENST00000447376 MYD88Q99836 296 aa20.93■□□□□ 0.94
SF3A1-204ENST00000447376 ZNF219Q9P2Y4 722 aaPredicted RBP20.93■□□□□ 0.94
SF3A1-204ENST00000447376 FKBP5Q13451 457 aaPredicted RBP20.92■□□□□ 0.94
SF3A1-204ENST00000447376 RBM17Q96I25 401 aaKnown RBP20.92■□□□□ 0.94
SF3A1-204ENST00000447376 ISCA1Q9BUE6 129 aa20.92■□□□□ 0.94
SF3A1-204ENST00000447376 TMX4Q9H1E5 349 aaPredicted RBP20.92■□□□□ 0.94
SF3A1-204ENST00000447376 MAP3K2Q9Y2U5 619 aa20.92■□□□□ 0.94
SF3A1-204ENST00000447376 PI4KAP2A4QPH2 592 aa20.91■□□□□ 0.94
SF3A1-204ENST00000447376 C21orf2O43822 256 aa20.91■□□□□ 0.94
SF3A1-204ENST00000447376 FLIIQ13045 1269 aa20.91■□□□□ 0.94
SF3A1-204ENST00000447376 TRIM28Q13263 835 aaKnown RBP20.91■□□□□ 0.94
SF3A1-204ENST00000447376 CRY2Q49AN0 593 aa20.91■□□□□ 0.94
SF3A1-204ENST00000447376 PI4KAP1Q8N8J0 262 aa20.91■□□□□ 0.94
SF3A1-204ENST00000447376 METTL22Q9BUU2 404 aaPredicted RBP20.91■□□□□ 0.94
SF3A1-204ENST00000447376 CACNA1FO60840 1977 aa20.9■□□□□ 0.94
SF3A1-204ENST00000447376 SLC10A5Q5PT55 438 aa20.9■□□□□ 0.94
SF3A1-204ENST00000447376 CCDC191Q8NCU4 936 aa20.9■□□□□ 0.94
SF3A1-204ENST00000447376 SLFN5Q08AF3 891 aa20.89■□□□□ 0.93
SF3A1-204ENST00000447376 CWC25Q9NXE8 425 aaPredicted RBP20.89■□□□□ 0.93
SF3A1-204ENST00000447376 TNRC6CQ9HCJ0 1690 aaKnown RBP20.89■□□□□ 0.93
SF3A1-204ENST00000447376 CACNA1SQ13698 1873 aa20.88■□□□□ 0.93
SF3A1-204ENST00000447376 CCDC93Q567U6 631 aa20.88■□□□□ 0.93
SF3A1-204ENST00000447376 ZNF784Q8NCA9 323 aaPredicted RBP20.88■□□□□ 0.93
SF3A1-204ENST00000447376 ZNF428Q96B54 188 aa20.88■□□□□ 0.93
SF3A1-204ENST00000447376 FAM89AQ96GI7 184 aa20.88■□□□□ 0.93
SF3A1-204ENST00000447376 HCLS1P14317 486 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-204ENST00000447376 HOXA10P31260 410 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-204ENST00000447376 C9orf131Q5VYM1 1079 aa20.87■□□□□ 0.93
SF3A1-204ENST00000447376 DDX46Q7L014 1031 aaKnown RBP20.87■□□□□ 0.93
SF3A1-204ENST00000447376 ZBTB38Q8NAP3 1195 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-204ENST00000447376 CRAMP1Q96RY5 1269 aa20.87■□□□□ 0.93
SF3A1-204ENST00000447376 RNF181Q9P0P0 153 aa20.87■□□□□ 0.93
SF3A1-204ENST00000447376 LMNB1P20700 586 aa20.86■□□□□ 0.93
SF3A1-204ENST00000447376 RTL5Q5HYW3 569 aaPredicted RBP20.86■□□□□ 0.93
SF3A1-204ENST00000447376 G2E3Q7L622 706 aa20.86■□□□□ 0.93
SF3A1-204ENST00000447376 TAOK3Q9H2K8 898 aa20.86■□□□□ 0.93
SF3A1-204ENST00000447376 ADCY9O60503 1353 aa20.85■□□□□ 0.93
SF3A1-204ENST00000447376 RASSF7Q02833 373 aa20.85■□□□□ 0.93
SF3A1-204ENST00000447376 GRIPAP1Q4V328 841 aa20.85■□□□□ 0.93
SF3A1-204ENST00000447376 CC2D2BQ6DHV5 1058 aa20.85■□□□□ 0.93
SF3A1-204ENST00000447376 RTKN2Q8IZC4 609 aa20.85■□□□□ 0.93
SF3A1-204ENST00000447376 DNAAF4Q8WXU2 420 aa20.85■□□□□ 0.93
SF3A1-204ENST00000447376 SLX4Q8IY92 1834 aa20.85■□□□□ 0.93
SF3A1-204ENST00000447376 IRS4O14654 1257 aaPredicted RBP20.84■□□□□ 0.93
SF3A1-204ENST00000447376 PCCAP05165 728 aaPredicted RBP20.84■□□□□ 0.93
SF3A1-204ENST00000447376 CDCA7LQ96GN5 454 aa20.84■□□□□ 0.93
SF3A1-204ENST00000447376 ZBED9Q6R2W3 1325 aa20.83■□□□□ 0.93
SF3A1-204ENST00000447376 PPEF1O14829 653 aaPredicted RBP20.83■□□□□ 0.93
SF3A1-204ENST00000447376 CT47B1P0C2W7 299 aaPredicted RBP20.83■□□□□ 0.93
SF3A1-204ENST00000447376 GPBP1L1Q9HC44 474 aaPredicted RBP20.83■□□□□ 0.93
SF3A1-204ENST00000447376 LTBP3Q9NS15 1303 aa20.82■□□□□ 0.92
SF3A1-204ENST00000447376 SYNE4Q8N205 404 aa20.82■□□□□ 0.92
SF3A1-204ENST00000447376 ZC3H4Q9UPT8 1303 aaKnown RBP20.81■□□□□ 0.92
SF3A1-204ENST00000447376 NFKBIEO00221 500 aa20.81■□□□□ 0.92
SF3A1-204ENST00000447376 BBOX1O75936 387 aa20.81■□□□□ 0.92
SF3A1-204ENST00000447376 C3orf67Q6ZVT6 689 aa20.81■□□□□ 0.92
SF3A1-204ENST00000447376 TRMT2AQ8IZ69 625 aaKnown RBP20.81■□□□□ 0.92
SF3A1-204ENST00000447376 LINS1Q8NG48 757 aa20.81■□□□□ 0.92
SF3A1-204ENST00000447376 NEURL1BA8MQ27 555 aa20.8■□□□□ 0.92
SF3A1-204ENST00000447376 PDE8AO60658 829 aa20.8■□□□□ 0.92
SF3A1-204ENST00000447376 TMC4Q7Z404 712 aa20.8■□□□□ 0.92
SF3A1-204ENST00000447376 ZNF526Q8TF50 670 aaPredicted RBP20.8■□□□□ 0.92
SF3A1-204ENST00000447376 C7orf43Q8WVR3 580 aa20.8■□□□□ 0.92
SF3A1-204ENST00000447376 ABCC4O15439 1325 aa20.79■□□□□ 0.92
SF3A1-204ENST00000447376 IGKV5-2P06315 115 aa20.79■□□□□ 0.92
SF3A1-204ENST00000447376 FKBP4Q02790 459 aaKnown RBP eCLIP20.79■□□□□ 0.92
SF3A1-204ENST00000447376 GRAPQ13588 217 aa20.79■□□□□ 0.92
SF3A1-204ENST00000447376 SF3B3Q15393 1217 aaKnown RBP20.79■□□□□ 0.92
SF3A1-204ENST00000447376 CWF19L2Q2TBE0 894 aaKnown RBP20.79■□□□□ 0.92
SF3A1-204ENST00000447376 ALDH1L2Q3SY69 923 aa20.79■□□□□ 0.92
SF3A1-204ENST00000447376 CCDC152Q4G0S7 254 aa20.79■□□□□ 0.92
SF3A1-204ENST00000447376 GRAPLQ8TC17 118 aaPredicted RBP20.79■□□□□ 0.92
SF3A1-204ENST00000447376 LAMB2P55268 1798 aa20.79■□□□□ 0.92
SF3A1-204ENST00000447376 CDHR2Q9BYE9 1310 aa20.78■□□□□ 0.92
SF3A1-204ENST00000447376 FER1L6Q2WGJ9 1857 aa20.78■□□□□ 0.92
SF3A1-204ENST00000447376 SMC4Q9NTJ3 1288 aa20.78■□□□□ 0.92
SF3A1-204ENST00000447376 DDX60Q8IY21 1712 aaKnown RBP20.78■□□□□ 0.92
SF3A1-204ENST00000447376 PTPRCP08575 1304 aa20.78■□□□□ 0.92
SF3A1-204ENST00000447376 KDM2BQ8NHM5 1336 aa20.78■□□□□ 0.92
SF3A1-204ENST00000447376 SBF1O95248 1867 aa20.77■□□□□ 0.92
SF3A1-204ENST00000447376 GCKRQ14397 625 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms