RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 MPRIPQ6WCQ1 1025 aa22.76■■□□□ 1.23
SDCBP-204ENST00000447182 TPCN1Q9ULQ1 816 aa22.76■■□□□ 1.23
SDCBP-204ENST00000447182 SETD1BQ9UPS6 1966 aaKnown RBP22.75■■□□□ 1.23
SDCBP-204ENST00000447182 VPS37CA5D8V6 355 aaPredicted RBP22.75■■□□□ 1.23
SDCBP-204ENST00000447182 PDCP20941 246 aa22.75■■□□□ 1.23
SDCBP-204ENST00000447182 GTF2F1P35269 517 aaKnown RBP eCLIP22.75■■□□□ 1.23
SDCBP-204ENST00000447182 DNTTIP2Q5QJE6 756 aaKnown RBP22.75■■□□□ 1.23
SDCBP-204ENST00000447182 LINS1Q8NG48 757 aa22.75■■□□□ 1.23
SDCBP-204ENST00000447182 TPM3P06753 285 aa22.75■■□□□ 1.23
SDCBP-204ENST00000447182 CCDC192P0DO97 292 aa22.75■■□□□ 1.23
SDCBP-204ENST00000447182 SLC27A2O14975 620 aa22.74■■□□□ 1.23
SDCBP-204ENST00000447182 SASH1O94885 1247 aa22.74■■□□□ 1.23
SDCBP-204ENST00000447182 KRT85P78386 507 aa22.74■■□□□ 1.23
SDCBP-204ENST00000447182 NMIQ13287 307 aaPredicted RBP22.74■■□□□ 1.23
SDCBP-204ENST00000447182 ANKRD1Q15327 319 aa22.74■■□□□ 1.23
SDCBP-204ENST00000447182 PROSER3Q2NL68 480 aa22.74■■□□□ 1.23
SDCBP-204ENST00000447182 GRM8O00222 908 aa22.73■■□□□ 1.23
SDCBP-204ENST00000447182 CWF19L2Q2TBE0 894 aaKnown RBP22.73■■□□□ 1.23
SDCBP-204ENST00000447182 LARP1BQ659C4 914 aaKnown RBP22.73■■□□□ 1.23
SDCBP-204ENST00000447182 FAM227BQ96M60 508 aa22.73■■□□□ 1.23
SDCBP-204ENST00000447182 MPNDQ8N594 471 aa22.73■■□□□ 1.23
SDCBP-204ENST00000447182 NECAB1Q8N987 351 aa22.73■■□□□ 1.23
SDCBP-204ENST00000447182 EAF2Q96CJ1 260 aaPredicted RBP22.73■■□□□ 1.23
SDCBP-204ENST00000447182 KAZALD1Q96I82 304 aa22.73■■□□□ 1.23
SDCBP-204ENST00000447182 KCNJ4P48050 445 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 G3BP1Q13283 466 aaKnown RBP eCLIP22.72■■□□□ 1.23
SDCBP-204ENST00000447182 TPRNQ4KMQ1 711 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 RNF20Q5VTR2 975 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 TTC6Q86TZ1 520 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 JCADQ9P266 1359 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 PXDNQ92626 1479 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 NPHP4O75161 1426 aaPredicted RBP22.72■■□□□ 1.23
SDCBP-204ENST00000447182 SIPA1L3O60292 1781 aaPredicted RBP22.72■■□□□ 1.23
SDCBP-204ENST00000447182 LMTK3Q96Q04 1460 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 MED23Q9ULK4 1368 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 AP5Z1O43299 807 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 C1orf141Q5JVX7 400 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 SUCLG2Q96I99 432 aa22.72■■□□□ 1.23
SDCBP-204ENST00000447182 LRRC59Q96AG4 307 aaKnown RBP22.71■■□□□ 1.23
SDCBP-204ENST00000447182 FER1L4A9Z1Z3 1794 aa22.7■■□□□ 1.23
SDCBP-204ENST00000447182 TSGA10IPQ3SY00 556 aa22.7■■□□□ 1.23
SDCBP-204ENST00000447182 BICC1Q9H694 974 aaKnown RBP22.7■■□□□ 1.23
SDCBP-204ENST00000447182 MRC1P22897 1456 aa22.7■■□□□ 1.22
SDCBP-204ENST00000447182 DDX58O95786 925 aaKnown RBP22.7■■□□□ 1.22
SDCBP-204ENST00000447182 BLOC1S2Q6QNY1 142 aa22.7■■□□□ 1.22
SDCBP-204ENST00000447182 CDC37L1Q7L3B6 337 aa22.7■■□□□ 1.22
SDCBP-204ENST00000447182 KIAA1524Q8TCG1 905 aa22.7■■□□□ 1.22
SDCBP-204ENST00000447182 FAM200AQ8TCP9 573 aa22.7■■□□□ 1.22
SDCBP-204ENST00000447182 RPS6KB1P23443 525 aa22.69■■□□□ 1.22
SDCBP-204ENST00000447182 HMG20BQ9P0W2 317 aa22.69■■□□□ 1.22
SDCBP-204ENST00000447182 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.69■■□□□ 1.22
SDCBP-204ENST00000447182 A0A0D9SFI3 127 aa22.69■■□□□ 1.22
SDCBP-204ENST00000447182 MAP3K11Q16584 847 aa22.69■■□□□ 1.22
SDCBP-204ENST00000447182 DDX54Q8TDD1 881 aaKnown RBP22.69■■□□□ 1.22
SDCBP-204ENST00000447182 NUP62CLQ9H1M0 184 aa22.69■■□□□ 1.22
SDCBP-204ENST00000447182 DDX21Q9NR30 783 aaKnown RBP eCLIP22.69■■□□□ 1.22
SDCBP-204ENST00000447182 ADAMTS7Q9UKP4 1686 aa22.68■■□□□ 1.22
SDCBP-204ENST00000447182 GOLGA6L6A8MZA4 724 aa22.68■■□□□ 1.22
SDCBP-204ENST00000447182 SCAND2PQ9GZW5 306 aaPredicted RBP22.68■■□□□ 1.22
SDCBP-204ENST00000447182 CCDC8Q9H0W5 538 aaPredicted RBP22.67■■□□□ 1.22
SDCBP-204ENST00000447182 KCNF1Q9H3M0 494 aa22.67■■□□□ 1.22
SDCBP-204ENST00000447182 CAMTA1Q9Y6Y1 1673 aa22.67■■□□□ 1.22
SDCBP-204ENST00000447182 DTNBO60941 627 aa22.67■■□□□ 1.22
SDCBP-204ENST00000447182 C17orf53Q8N3J3 647 aaPredicted RBP22.67■■□□□ 1.22
SDCBP-204ENST00000447182 FSD1Q9BTV5 496 aa22.67■■□□□ 1.22
SDCBP-204ENST00000447182 PLCB2Q00722 1185 aa22.66■■□□□ 1.22
SDCBP-204ENST00000447182 TOB2Q14106 344 aaPredicted RBP22.66■■□□□ 1.22
SDCBP-204ENST00000447182 PKNOX2Q96KN3 472 aa22.66■■□□□ 1.22
SDCBP-204ENST00000447182 TLR7Q9NYK1 1049 aaKnown RBP22.66■■□□□ 1.22
SDCBP-204ENST00000447182 LIG1P18858 919 aa22.66■■□□□ 1.22
SDCBP-204ENST00000447182 PSME1Q06323 249 aa22.66■■□□□ 1.22
SDCBP-204ENST00000447182 COL9A3Q14050 684 aaPredicted RBP22.66■■□□□ 1.22
SDCBP-204ENST00000447182 RBM43Q6ZSC3 357 aaKnown RBP22.66■■□□□ 1.22
SDCBP-204ENST00000447182 MRVI1Q9Y6F6 885 aa22.66■■□□□ 1.22
SDCBP-204ENST00000447182 NPHP3Q7Z494 1330 aa22.66■■□□□ 1.22
SDCBP-204ENST00000447182 PRAMEF22A3QJZ6 481 aa22.65■■□□□ 1.22
SDCBP-204ENST00000447182 TYRO3Q06418 890 aa22.65■■□□□ 1.22
SDCBP-204ENST00000447182 PDIA6Q15084 440 aa22.65■■□□□ 1.22
SDCBP-204ENST00000447182 USPL1Q5W0Q7 1092 aa22.65■■□□□ 1.22
SDCBP-204ENST00000447182 ARHGEF25Q86VW2 580 aa22.65■■□□□ 1.22
SDCBP-204ENST00000447182 BOLA2Q9H3K6 86 aa22.65■■□□□ 1.22
SDCBP-204ENST00000447182 SLIT3O75094 1523 aa22.64■■□□□ 1.22
SDCBP-204ENST00000447182 FERMT3Q86UX7 667 aa22.64■■□□□ 1.22
SDCBP-204ENST00000447182 DDX19AQ9NUU7 478 aaKnown RBP22.64■■□□□ 1.22
SDCBP-204ENST00000447182 IGKV5-2P06315 115 aa22.63■■□□□ 1.21
SDCBP-204ENST00000447182 ZBTB7CA1YPR0 619 aa22.63■■□□□ 1.21
SDCBP-204ENST00000447182 TAF5LO75529 589 aa22.63■■□□□ 1.21
SDCBP-204ENST00000447182 KRT32Q14532 448 aa22.63■■□□□ 1.21
SDCBP-204ENST00000447182 LARP1Q6PKG0 1096 aaKnown RBP22.63■■□□□ 1.21
SDCBP-204ENST00000447182 SPATA32Q96LK8 384 aa22.63■■□□□ 1.21
SDCBP-204ENST00000447182 PYCARDQ9ULZ3 195 aa22.63■■□□□ 1.21
SDCBP-204ENST00000447182 KIF3AQ9Y496 699 aa22.63■■□□□ 1.21
SDCBP-204ENST00000447182 FAM173BQ6P4H8 233 aa22.62■■□□□ 1.21
SDCBP-204ENST00000447182 ZNF589Q86UQ0 364 aaPredicted RBP22.62■■□□□ 1.21
SDCBP-204ENST00000447182 LEO1Q8WVC0 666 aaPredicted RBP22.62■■□□□ 1.21
SDCBP-204ENST00000447182 CCDC94Q9BW85 323 aaPredicted RBP22.62■■□□□ 1.21
SDCBP-204ENST00000447182 TNMDQ9H2S6 317 aa22.62■■□□□ 1.21
SDCBP-204ENST00000447182 GCP02774 474 aa22.61■■□□□ 1.21
SDCBP-204ENST00000447182 ZNF710Q8N1W2 664 aa22.61■■□□□ 1.21
SDCBP-204ENST00000447182 DACT1Q9NYF0 836 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms