RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 KANK3Q6NY19 840 aa6.6□□□□□ -1.35
VPS41-207ENST00000439468 SLC30A3Q99726 388 aa6.6□□□□□ -1.35
VPS41-207ENST00000439468 AVENQ9NQS1 362 aaPredicted RBP6.6□□□□□ -1.35
VPS41-207ENST00000439468 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS41-207ENST00000439468 MKL2Q9ULH7 1088 aa6.6□□□□□ -1.35
VPS41-207ENST00000439468 CARNS1A5YM72 827 aa6.59□□□□□ -1.35
VPS41-207ENST00000439468 FKBP5Q13451 457 aaPredicted RBP6.59□□□□□ -1.35
VPS41-207ENST00000439468 CHSY3Q70JA7 882 aa6.59□□□□□ -1.35
VPS41-207ENST00000439468 FCHSD1Q86WN1 690 aa6.59□□□□□ -1.35
VPS41-207ENST00000439468 BHMTQ93088 406 aa6.59□□□□□ -1.35
VPS41-207ENST00000439468 MKNK1Q9BUB5 465 aa6.59□□□□□ -1.35
VPS41-207ENST00000439468 QTRT2Q9H974 415 aaKnown RBP6.59□□□□□ -1.35
VPS41-207ENST00000439468 KLF15Q9UIH9 416 aa6.59□□□□□ -1.35
VPS41-207ENST00000439468 TGFBR3LH3BV60 316 aa6.58□□□□□ -1.36
VPS41-207ENST00000439468 ALAS2P22557 587 aa6.58□□□□□ -1.36
VPS41-207ENST00000439468 TMEM164Q5U3C3 297 aa6.58□□□□□ -1.36
VPS41-207ENST00000439468 KCTD17Q8N5Z5 321 aa6.58□□□□□ -1.36
VPS41-207ENST00000439468 BTBD6Q96KE9 485 aa6.58□□□□□ -1.36
VPS41-207ENST00000439468 PNMA5Q96PV4 448 aa6.58□□□□□ -1.36
VPS41-207ENST00000439468 EPB42P16452 691 aa6.57□□□□□ -1.36
VPS41-207ENST00000439468 IDH3AP50213 366 aa6.57□□□□□ -1.36
VPS41-207ENST00000439468 RETREG2Q8NC44 543 aa6.57□□□□□ -1.36
VPS41-207ENST00000439468 IGFLR1Q9H665 355 aa6.57□□□□□ -1.36
VPS41-207ENST00000439468 PIK3R2O00459 728 aa6.56□□□□□ -1.36
VPS41-207ENST00000439468 SIN3BO75182 1162 aa6.56□□□□□ -1.36
VPS41-207ENST00000439468 GSK3AP49840 483 aa6.56□□□□□ -1.36
VPS41-207ENST00000439468 C11orf91Q3C1V1 193 aa6.56□□□□□ -1.36
VPS41-207ENST00000439468 IER5Q5VY09 327 aa6.56□□□□□ -1.36
VPS41-207ENST00000439468 UBE2OQ9C0C9 1292 aaKnown RBP6.56□□□□□ -1.36
VPS41-207ENST00000439468 BCS1LQ9Y276 419 aa6.56□□□□□ -1.36
VPS41-207ENST00000439468 ELOA3CA0A087WX78 387 aaPredicted RBP6.55□□□□□ -1.36
VPS41-207ENST00000439468 ELOA3DA6NLF2 546 aaPredicted RBP6.55□□□□□ -1.36
VPS41-207ENST00000439468 KCNQ4P56696 695 aa6.55□□□□□ -1.36
VPS41-207ENST00000439468 FAM69CQ0P6D2 419 aa6.55□□□□□ -1.36
VPS41-207ENST00000439468 ELOA3BQ3SY89 546 aa6.55□□□□□ -1.36
VPS41-207ENST00000439468 ELOA3Q8NG57 546 aa6.55□□□□□ -1.36
VPS41-207ENST00000439468 GNB5O14775 395 aa6.54□□□□□ -1.36
VPS41-207ENST00000439468 MICAL2O94851 1124 aa6.54□□□□□ -1.36
VPS41-207ENST00000439468 ADH7P40394 386 aa6.54□□□□□ -1.36
VPS41-207ENST00000439468 ARSDP51689 593 aa6.54□□□□□ -1.36
VPS41-207ENST00000439468 TRIM26Q12899 539 aaPredicted RBP6.54□□□□□ -1.36
VPS41-207ENST00000439468 NAA30Q147X3 362 aaPredicted RBP6.54□□□□□ -1.36
VPS41-207ENST00000439468 OCLNQ16625 522 aa6.54□□□□□ -1.36
VPS41-207ENST00000439468 KRT25Q7Z3Z0 450 aa6.54□□□□□ -1.36
VPS41-207ENST00000439468 IFT43Q96FT9 208 aa6.54□□□□□ -1.36
VPS41-207ENST00000439468 MYO19Q96H55 970 aa6.54□□□□□ -1.36
VPS41-207ENST00000439468 CXXC1Q9P0U4 656 aaPredicted RBP6.54□□□□□ -1.36
VPS41-207ENST00000439468 PPP1R15AO75807 674 aaPredicted RBP6.53□□□□□ -1.36
VPS41-207ENST00000439468 PDIA4P13667 645 aaKnown RBP6.53□□□□□ -1.36
VPS41-207ENST00000439468 NFKB1P19838 968 aa6.53□□□□□ -1.36
VPS41-207ENST00000439468 DGKGP49619 791 aa6.53□□□□□ -1.36
VPS41-207ENST00000439468 CCINQ13939 588 aa6.53□□□□□ -1.36
VPS41-207ENST00000439468 COX20Q5RI15 118 aa6.53□□□□□ -1.36
VPS41-207ENST00000439468 GPAT2Q6NUI2 795 aa6.53□□□□□ -1.36
VPS41-207ENST00000439468 C16orf46Q6P387 395 aa6.53□□□□□ -1.36
VPS41-207ENST00000439468 TREML1Q86YW5 311 aa6.53□□□□□ -1.36
VPS41-207ENST00000439468 CLP1Q92989 425 aaKnown RBP6.53□□□□□ -1.36
VPS41-207ENST00000439468 LRFN2Q9ULH4 789 aa6.53□□□□□ -1.36
VPS41-207ENST00000439468 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.53□□□□□ -1.36
VPS41-207ENST00000439468 PTCD1O75127 700 aaKnown RBP6.52□□□□□ -1.37
VPS41-207ENST00000439468 ATP2B4P23634 1241 aa6.52□□□□□ -1.37
VPS41-207ENST00000439468 INPP5BP32019 993 aa6.52□□□□□ -1.37
VPS41-207ENST00000439468 RGL4Q8IZJ4 473 aa6.52□□□□□ -1.37
VPS41-207ENST00000439468 TNFRSF25Q93038 417 aa6.52□□□□□ -1.37
VPS41-207ENST00000439468 DCAF5Q96JK2 942 aa6.52□□□□□ -1.37
VPS41-207ENST00000439468 NOP53Q9NZM5 478 aaKnown RBP6.52□□□□□ -1.37
VPS41-207ENST00000439468 DMGDHQ9UI17 866 aaKnown RBP6.52□□□□□ -1.37
VPS41-207ENST00000439468 USP20Q9Y2K6 914 aa6.52□□□□□ -1.37
VPS41-207ENST00000439468 ADARB2-AS1A8MUL3 147 aa6.51□□□□□ -1.37
VPS41-207ENST00000439468 LINC00114Q6XXX2 140 aa6.51□□□□□ -1.37
VPS41-207ENST00000439468 CAPN12Q6ZSI9 719 aa6.51□□□□□ -1.37
VPS41-207ENST00000439468 CMTR1Q8N1G2 835 aaKnown RBP6.51□□□□□ -1.37
VPS41-207ENST00000439468 GSX2Q9BZM3 304 aa6.51□□□□□ -1.37
VPS41-207ENST00000439468 SAP130Q9H0E3 1048 aa6.51□□□□□ -1.37
VPS41-207ENST00000439468 SUV39H2Q9H5I1 410 aa6.51□□□□□ -1.37
VPS41-207ENST00000439468 M0R082 166 aa6.5□□□□□ -1.37
VPS41-207ENST00000439468 HOXB4P17483 251 aaPredicted RBP6.5□□□□□ -1.37
VPS41-207ENST00000439468 BRD2P25440 801 aaKnown RBP6.5□□□□□ -1.37
VPS41-207ENST00000439468 ZNF417Q8TAU3 575 aa6.5□□□□□ -1.37
VPS41-207ENST00000439468 ZNF587Q96SQ5 575 aaPredicted RBP6.5□□□□□ -1.37
VPS41-207ENST00000439468 RTCBQ9Y3I0 505 aaKnown RBP6.5□□□□□ -1.37
VPS41-207ENST00000439468 SASH3O75995 380 aa6.49□□□□□ -1.37
VPS41-207ENST00000439468 RARAP10276 462 aa6.49□□□□□ -1.37
VPS41-207ENST00000439468 SUZ12Q15022 739 aaKnown RBP6.49□□□□□ -1.37
VPS41-207ENST00000439468 C8orf86Q6ZUL3 223 aa6.49□□□□□ -1.37
VPS41-207ENST00000439468 COL26A1Q96A83 441 aa6.49□□□□□ -1.37
VPS41-207ENST00000439468 EFCC1Q9HA90 598 aa6.49□□□□□ -1.37
VPS41-207ENST00000439468 DNAJB12Q9NXW2 375 aaKnown RBP6.49□□□□□ -1.37
VPS41-207ENST00000439468 SLC6A14Q9UN76 642 aa6.49□□□□□ -1.37
VPS41-207ENST00000439468 XYLBO75191 536 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 ALBP02768 609 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 TARSP26639 723 aaKnown RBP6.48□□□□□ -1.37
VPS41-207ENST00000439468 COL8A1P27658 744 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 GRNP28799 593 aaKnown RBP6.48□□□□□ -1.37
VPS41-207ENST00000439468 PLA2G4EQ3MJ16 856 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 ETFBKMTQ8IXQ9 262 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 NUDT8Q8WV74 236 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 TRAIPQ9BWF2 469 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 PLVAPQ9BX97 442 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 JPH1Q9HDC5 661 aaPredicted RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms