RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 TCIRG1Q13488 830 aa14.71□□□□□ -0.05
COL28A1-203ENST00000435823 RIC3Q7Z5B4 369 aa14.71□□□□□ -0.05
COL28A1-203ENST00000435823 PHAXQ9H814 394 aaKnown RBP14.71□□□□□ -0.05
COL28A1-203ENST00000435823 DLEC1Q9Y238 1755 aa14.7□□□□□ -0.06
COL28A1-203ENST00000435823 YY1P25490 414 aa14.7□□□□□ -0.06
COL28A1-203ENST00000435823 SUSD4Q5VX71 490 aa14.7□□□□□ -0.06
COL28A1-203ENST00000435823 REM2Q8IYK8 340 aaPredicted RBP14.7□□□□□ -0.06
COL28A1-203ENST00000435823 ZNF622Q969S3 477 aaKnown RBP eCLIP14.7□□□□□ -0.06
COL28A1-203ENST00000435823 UTP14AQ9BVJ6 771 aaKnown RBP14.7□□□□□ -0.06
COL28A1-203ENST00000435823 RNF123Q5XPI4 1314 aa14.69□□□□□ -0.06
COL28A1-203ENST00000435823 TCERG1O14776 1098 aaKnown RBP14.69□□□□□ -0.06
COL28A1-203ENST00000435823 VAMP4O75379 141 aa14.69□□□□□ -0.06
COL28A1-203ENST00000435823 NUTM1Q86Y26 1132 aa14.69□□□□□ -0.06
COL28A1-203ENST00000435823 TTLL6Q8N841 843 aa14.69□□□□□ -0.06
COL28A1-203ENST00000435823 ARFGEF1Q9Y6D6 1849 aa14.69□□□□□ -0.06
COL28A1-203ENST00000435823 ARFGEF2Q9Y6D5 1785 aa14.68□□□□□ -0.06
COL28A1-203ENST00000435823 NTSR2O95665 410 aa14.68□□□□□ -0.06
COL28A1-203ENST00000435823 ERFEQ4G0M1 354 aa14.68□□□□□ -0.06
COL28A1-203ENST00000435823 STYK1Q6J9G0 422 aa14.68□□□□□ -0.06
COL28A1-203ENST00000435823 NLRP10Q86W26 655 aa14.68□□□□□ -0.06
COL28A1-203ENST00000435823 CNKSR1Q969H4 720 aa14.68□□□□□ -0.06
COL28A1-203ENST00000435823 MASTLQ96GX5 879 aa14.68□□□□□ -0.06
COL28A1-203ENST00000435823 RIC1Q4ADV7 1423 aa14.67□□□□□ -0.06
COL28A1-203ENST00000435823 COL11A2P13942 1736 aaPredicted RBP14.67□□□□□ -0.06
COL28A1-203ENST00000435823 SRGNP10124 158 aa14.67□□□□□ -0.06
COL28A1-203ENST00000435823 SLFN5Q08AF3 891 aa14.67□□□□□ -0.06
COL28A1-203ENST00000435823 ARHGAP27Q6ZUM4 889 aa14.67□□□□□ -0.06
COL28A1-203ENST00000435823 ISCA1Q9BUE6 129 aa14.67□□□□□ -0.06
COL28A1-203ENST00000435823 TRMT112Q9UI30 125 aaKnown RBP14.67□□□□□ -0.06
COL28A1-203ENST00000435823 ABCC12Q96J65 1359 aa14.67□□□□□ -0.06
COL28A1-203ENST00000435823 CACNA1FO60840 1977 aa14.66□□□□□ -0.06
COL28A1-203ENST00000435823 KLRG2A4D1S0 409 aaPredicted RBP14.66□□□□□ -0.06
COL28A1-203ENST00000435823 NPR1P16066 1061 aa14.66□□□□□ -0.06
COL28A1-203ENST00000435823 KSR2Q6VAB6 950 aa14.66□□□□□ -0.06
COL28A1-203ENST00000435823 SH3TC1Q8TE82 1336 aa14.66□□□□□ -0.06
COL28A1-203ENST00000435823 ATP5J2-PTCD1G3V325 749 aa14.65□□□□□ -0.06
COL28A1-203ENST00000435823 FLIIQ13045 1269 aa14.65□□□□□ -0.06
COL28A1-203ENST00000435823 RPGRQ92834 1020 aaKnown RBP14.65□□□□□ -0.06
COL28A1-203ENST00000435823 NLRP3Q96P20 1036 aa14.65□□□□□ -0.06
COL28A1-203ENST00000435823 MYD88Q99836 296 aa14.65□□□□□ -0.06
COL28A1-203ENST00000435823 MAP3K2Q9Y2U5 619 aa14.65□□□□□ -0.06
COL28A1-203ENST00000435823 TNRC6CQ9HCJ0 1690 aaKnown RBP14.65□□□□□ -0.06
COL28A1-203ENST00000435823 PI4KAP2A4QPH2 592 aa14.64□□□□□ -0.07
COL28A1-203ENST00000435823 ALDH1B1P30837 517 aa14.64□□□□□ -0.07
COL28A1-203ENST00000435823 NEXNQ0ZGT2 675 aa14.64□□□□□ -0.07
COL28A1-203ENST00000435823 TRIM28Q13263 835 aaKnown RBP14.64□□□□□ -0.07
COL28A1-203ENST00000435823 FKBP5Q13451 457 aaPredicted RBP14.64□□□□□ -0.07
COL28A1-203ENST00000435823 G2E3Q7L622 706 aa14.64□□□□□ -0.07
COL28A1-203ENST00000435823 PI4KAP1Q8N8J0 262 aa14.64□□□□□ -0.07
COL28A1-203ENST00000435823 METTL22Q9BUU2 404 aaPredicted RBP14.64□□□□□ -0.07
COL28A1-203ENST00000435823 HNRNPUQ00839 825 aaKnown RBP eCLIP14.63□□□□□ -0.07
COL28A1-203ENST00000435823 CRY2Q49AN0 593 aa14.63□□□□□ -0.07
COL28A1-203ENST00000435823 SLC10A5Q5PT55 438 aa14.63□□□□□ -0.07
COL28A1-203ENST00000435823 PRPF40BQ6NWY9 871 aaKnown RBP14.63□□□□□ -0.07
COL28A1-203ENST00000435823 CDCA7LQ96GN5 454 aa14.63□□□□□ -0.07
COL28A1-203ENST00000435823 ADCY9O60503 1353 aa14.62□□□□□ -0.07
COL28A1-203ENST00000435823 CACNA1SQ13698 1873 aa14.62□□□□□ -0.07
COL28A1-203ENST00000435823 SOGA3Q5TF21 947 aa14.62□□□□□ -0.07
COL28A1-203ENST00000435823 CCDC191Q8NCU4 936 aa14.62□□□□□ -0.07
COL28A1-203ENST00000435823 ZNF428Q96B54 188 aa14.62□□□□□ -0.07
COL28A1-203ENST00000435823 CWC25Q9NXE8 425 aaPredicted RBP14.62□□□□□ -0.07
COL28A1-203ENST00000435823 C21orf2O43822 256 aa14.61□□□□□ -0.07
COL28A1-203ENST00000435823 HCLS1P14317 486 aaPredicted RBP14.61□□□□□ -0.07
COL28A1-203ENST00000435823 HSP90B1P14625 803 aaKnown RBP14.61□□□□□ -0.07
COL28A1-203ENST00000435823 FXR2P51116 673 aaKnown RBP eCLIP14.61□□□□□ -0.07
COL28A1-203ENST00000435823 TRMT2AQ8IZ69 625 aaKnown RBP14.61□□□□□ -0.07
COL28A1-203ENST00000435823 FAM89AQ96GI7 184 aa14.61□□□□□ -0.07
COL28A1-203ENST00000435823 RBM17Q96I25 401 aaKnown RBP14.61□□□□□ -0.07
COL28A1-203ENST00000435823 SLX4Q8IY92 1834 aa14.6□□□□□ -0.07
COL28A1-203ENST00000435823 HOXA10P31260 410 aaPredicted RBP14.6□□□□□ -0.07
COL28A1-203ENST00000435823 ZBTB38Q8NAP3 1195 aaPredicted RBP14.6□□□□□ -0.07
COL28A1-203ENST00000435823 DNAAF4Q8WXU2 420 aa14.6□□□□□ -0.07
COL28A1-203ENST00000435823 KCNA4P22459 653 aa14.59□□□□□ -0.07
COL28A1-203ENST00000435823 CCDC93Q567U6 631 aa14.59□□□□□ -0.07
COL28A1-203ENST00000435823 RTL5Q5HYW3 569 aaPredicted RBP14.59□□□□□ -0.07
COL28A1-203ENST00000435823 C3orf67Q6ZVT6 689 aa14.59□□□□□ -0.07
COL28A1-203ENST00000435823 SYNE4Q8N205 404 aa14.59□□□□□ -0.07
COL28A1-203ENST00000435823 CRAMP1Q96RY5 1269 aa14.59□□□□□ -0.07
COL28A1-203ENST00000435823 GOLGB1Q14789 3259 aaKnown RBP14.59□□□□□ -0.07
COL28A1-203ENST00000435823 IRS4O14654 1257 aaPredicted RBP14.58□□□□□ -0.08
COL28A1-203ENST00000435823 PCCAP05165 728 aaPredicted RBP14.58□□□□□ -0.08
COL28A1-203ENST00000435823 IGKV5-2P06315 115 aa14.58□□□□□ -0.08
COL28A1-203ENST00000435823 CT47B1P0C2W7 299 aaPredicted RBP14.58□□□□□ -0.08
COL28A1-203ENST00000435823 C9orf131Q5VYM1 1079 aa14.58□□□□□ -0.08
COL28A1-203ENST00000435823 DDX60Q8IY21 1712 aaKnown RBP14.58□□□□□ -0.08
COL28A1-203ENST00000435823 LAMB2P55268 1798 aa14.57□□□□□ -0.08
COL28A1-203ENST00000435823 NEURL1BA8MQ27 555 aa14.57□□□□□ -0.08
COL28A1-203ENST00000435823 RASSF7Q02833 373 aa14.57□□□□□ -0.08
COL28A1-203ENST00000435823 CWF19L2Q2TBE0 894 aaKnown RBP14.57□□□□□ -0.08
COL28A1-203ENST00000435823 ALDH1L2Q3SY69 923 aa14.57□□□□□ -0.08
COL28A1-203ENST00000435823 DDX46Q7L014 1031 aaKnown RBP14.57□□□□□ -0.08
COL28A1-203ENST00000435823 LINS1Q8NG48 757 aa14.57□□□□□ -0.08
COL28A1-203ENST00000435823 TMX4Q9H1E5 349 aaPredicted RBP14.57□□□□□ -0.08
COL28A1-203ENST00000435823 TAOK3Q9H2K8 898 aa14.57□□□□□ -0.08
COL28A1-203ENST00000435823 NFKBIEO00221 500 aa14.56□□□□□ -0.08
COL28A1-203ENST00000435823 PPEF1O14829 653 aaPredicted RBP14.56□□□□□ -0.08
COL28A1-203ENST00000435823 LMNB1P20700 586 aa14.56□□□□□ -0.08
COL28A1-203ENST00000435823 CC2D2BQ6DHV5 1058 aa14.56□□□□□ -0.08
COL28A1-203ENST00000435823 MRPL50Q8N5N7 158 aaKnown RBP14.56□□□□□ -0.08
COL28A1-203ENST00000435823 ZNF784Q8NCA9 323 aaPredicted RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms