RNA–Protein interactions for RNA: ENST00000433822.1

COL17A1-204, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-204ENST00000433822 FRAT1Q92837 279 aaPredicted RBP9.42□□□□□ -0.9
COL17A1-204ENST00000433822 KIFC2Q96AC6 838 aa9.42□□□□□ -0.9
COL17A1-204ENST00000433822 USB1Q9BQ65 265 aaKnown RBP9.42□□□□□ -0.9
COL17A1-204ENST00000433822 SMC4Q9NTJ3 1288 aa9.42□□□□□ -0.9
COL17A1-204ENST00000433822 PCDHB15Q9Y5E8 787 aa9.42□□□□□ -0.9
COL17A1-204ENST00000433822 DLG5Q8TDM6 1919 aa9.42□□□□□ -0.9
COL17A1-204ENST00000433822 PTPRUQ92729 1446 aa9.41□□□□□ -0.9
COL17A1-204ENST00000433822 JCADQ9P266 1359 aa9.41□□□□□ -0.9
COL17A1-204ENST00000433822 PRR36Q9H6K5 1346 aa9.41□□□□□ -0.9
COL17A1-204ENST00000433822 SMC5Q8IY18 1101 aa9.41□□□□□ -0.9
COL17A1-204ENST00000433822 THEMISQ8N1K5 641 aaPredicted RBP9.41□□□□□ -0.9
COL17A1-204ENST00000433822 SSH1Q8WYL5 1049 aa9.41□□□□□ -0.9
COL17A1-204ENST00000433822 EID1Q9Y6B2 187 aa9.41□□□□□ -0.9
COL17A1-204ENST00000433822 TMEM94Q12767 1356 aa9.4□□□□□ -0.9
COL17A1-204ENST00000433822 DXOO77932 396 aaKnown RBP9.4□□□□□ -0.9
COL17A1-204ENST00000433822 RTL5Q5HYW3 569 aaPredicted RBP9.4□□□□□ -0.9
COL17A1-204ENST00000433822 TXNDC2Q86VQ3 553 aa9.4□□□□□ -0.9
COL17A1-204ENST00000433822 HPS1Q92902 700 aa9.4□□□□□ -0.9
COL17A1-204ENST00000433822 ZBTB40Q9NUA8 1239 aa9.4□□□□□ -0.9
COL17A1-204ENST00000433822 ARHGEF10O15013 1369 aa9.39□□□□□ -0.91
COL17A1-204ENST00000433822 KIAA0232Q92628 1395 aa9.39□□□□□ -0.91
COL17A1-204ENST00000433822 EIF5BO60841 1220 aaKnown RBP9.39□□□□□ -0.91
COL17A1-204ENST00000433822 CD46P15529 392 aa9.39□□□□□ -0.91
COL17A1-204ENST00000433822 NME9Q86XW9 330 aa9.39□□□□□ -0.91
COL17A1-204ENST00000433822 TSR2Q969E8 191 aaKnown RBP9.39□□□□□ -0.91
COL17A1-204ENST00000433822 ABCC4O15439 1325 aa9.38□□□□□ -0.91
COL17A1-204ENST00000433822 USP19O94966 1318 aa9.38□□□□□ -0.91
COL17A1-204ENST00000433822 KDM4AO75164 1064 aa9.38□□□□□ -0.91
COL17A1-204ENST00000433822 RGS3P49796 1198 aa9.38□□□□□ -0.91
COL17A1-204ENST00000433822 WNT7BP56706 349 aa9.38□□□□□ -0.91
COL17A1-204ENST00000433822 RC3H1Q5TC82 1133 aaKnown RBP9.38□□□□□ -0.91
COL17A1-204ENST00000433822 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.38□□□□□ -0.91
COL17A1-204ENST00000433822 FMN2Q9NZ56 1722 aa9.38□□□□□ -0.91
COL17A1-204ENST00000433822 KDRP35968 1356 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 SOS1Q07889 1333 aaPredicted RBP9.37□□□□□ -0.91
COL17A1-204ENST00000433822 VAMP4O75379 141 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 RXRBP28702 533 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 LTKP29376 864 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 LCE2CQ5TA81 110 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 NPM2Q86SE8 214 aaKnown RBP9.37□□□□□ -0.91
COL17A1-204ENST00000433822 GPIHBP1Q8IV16 184 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 CCDC24Q8N4L8 307 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 UPF2Q9HAU5 1272 aaKnown RBP9.37□□□□□ -0.91
COL17A1-204ENST00000433822 EMILIN1Q9Y6C2 1016 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 SBNO1A3KN83 1393 aa9.37□□□□□ -0.91
COL17A1-204ENST00000433822 ACEP12821 1306 aa9.36□□□□□ -0.91
COL17A1-204ENST00000433822 USP46P62068 366 aa9.36□□□□□ -0.91
COL17A1-204ENST00000433822 BECN1Q14457 450 aa9.36□□□□□ -0.91
COL17A1-204ENST00000433822 MEX3CQ5U5Q3 659 aaKnown RBP9.36□□□□□ -0.91
COL17A1-204ENST00000433822 ZNF772Q68DY9 489 aaPredicted RBP9.36□□□□□ -0.91
COL17A1-204ENST00000433822 GCC1Q96CN9 775 aa9.36□□□□□ -0.91
COL17A1-204ENST00000433822 TBC1D32Q96NH3 1257 aa9.36□□□□□ -0.91
COL17A1-204ENST00000433822 BCL2L13Q9BXK5 485 aa9.36□□□□□ -0.91
COL17A1-204ENST00000433822 API5Q9BZZ5 524 aaKnown RBP9.36□□□□□ -0.91
COL17A1-204ENST00000433822 NOB1Q9ULX3 412 aaKnown RBP9.36□□□□□ -0.91
COL17A1-204ENST00000433822 NWD1Q149M9 1564 aa9.36□□□□□ -0.91
COL17A1-204ENST00000433822 PEAK1Q9H792 1746 aa9.36□□□□□ -0.91
COL17A1-204ENST00000433822 LRP5O75197 1615 aa9.35□□□□□ -0.91
COL17A1-204ENST00000433822 HTATSF1O43719 755 aaKnown RBP9.35□□□□□ -0.91
COL17A1-204ENST00000433822 TMEM57Q8N5G2 664 aa9.35□□□□□ -0.91
COL17A1-204ENST00000433822 PHACTR3Q96KR7 559 aa9.35□□□□□ -0.91
COL17A1-204ENST00000433822 CACNA1FO60840 1977 aa9.35□□□□□ -0.91
COL17A1-204ENST00000433822 FLT4P35916 1363 aa9.35□□□□□ -0.91
COL17A1-204ENST00000433822 LRRC37A3O60309 1634 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 AHDC1Q5TGY3 1603 aaPredicted RBP9.34□□□□□ -0.91
COL17A1-204ENST00000433822 CHL1O00533 1208 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 SKOR1P84550 965 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 NUCB1Q02818 461 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 EIF4A2Q14240 407 aaKnown RBP9.34□□□□□ -0.91
COL17A1-204ENST00000433822 SKAP1Q86WV1 359 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 ITPRIPQ8IWB1 547 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 SLC16A10Q8TF71 515 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 MBIPQ9NS73 344 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 BABAM1Q9NWV8 329 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 TNNQ9UQP3 1299 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 RTL1A6NKG5 1358 aa9.34□□□□□ -0.91
COL17A1-204ENST00000433822 PHRF1Q9P1Y6 1649 aaKnown RBP9.34□□□□□ -0.91
COL17A1-204ENST00000433822 PTPRCP08575 1304 aa9.33□□□□□ -0.92
COL17A1-204ENST00000433822 PIK3C2AO00443 1686 aa9.33□□□□□ -0.92
COL17A1-204ENST00000433822 ZBTB7BO15156 539 aaPredicted RBP9.33□□□□□ -0.92
COL17A1-204ENST00000433822 TWISTNBQ3B726 338 aaPredicted RBP9.33□□□□□ -0.92
COL17A1-204ENST00000433822 AMOTL2Q9Y2J4 779 aa9.33□□□□□ -0.92
COL17A1-204ENST00000433822 AFF2P51816 1311 aa9.32□□□□□ -0.92
COL17A1-204ENST00000433822 IGSF1Q8N6C5 1336 aa9.32□□□□□ -0.92
COL17A1-204ENST00000433822 MARF1Q9Y4F3 1742 aaKnown RBP9.32□□□□□ -0.92
COL17A1-204ENST00000433822 ALDH1A1P00352 501 aa9.32□□□□□ -0.92
COL17A1-204ENST00000433822 HMOX1P09601 288 aa9.32□□□□□ -0.92
COL17A1-204ENST00000433822 INTS3Q68E01 1043 aaKnown RBP9.32□□□□□ -0.92
COL17A1-204ENST00000433822 CHD2O14647 1828 aaKnown RBP9.32□□□□□ -0.92
COL17A1-204ENST00000433822 SPATA31A6Q5VVP1 1343 aa9.31□□□□□ -0.92
COL17A1-204ENST00000433822 CRB1P82279 1406 aa9.31□□□□□ -0.92
COL17A1-204ENST00000433822 FAM181BA6NEQ2 426 aa9.31□□□□□ -0.92
COL17A1-204ENST00000433822 NUTM2BA6NNL0 878 aaPredicted RBP9.31□□□□□ -0.92
COL17A1-204ENST00000433822 NUTM2EB1AL46 878 aaPredicted RBP9.31□□□□□ -0.92
COL17A1-204ENST00000433822 DEKP35659 375 aaKnown RBP9.31□□□□□ -0.92
COL17A1-204ENST00000433822 RRS1Q15050 365 aaKnown RBP9.31□□□□□ -0.92
COL17A1-204ENST00000433822 BMP2KLQ5H9B9 411 aa9.31□□□□□ -0.92
COL17A1-204ENST00000433822 NUTM2AQ8IVF1 878 aaPredicted RBP9.31□□□□□ -0.92
COL17A1-204ENST00000433822 GAS2L2Q8NHY3 880 aa9.31□□□□□ -0.92
COL17A1-204ENST00000433822 N4BP2Q86UW6 1770 aaPredicted RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms