RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 VTI1BQ9UEU0 232 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 PARP2Q9UGN5 583 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 A0A1W2PNR3 127 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 UBAP1LF5GYI3 381 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 NRG2O14511 850 aaPredicted RBP9.52□□□□□ -0.89
USP54-206ENST00000433394 AXIN1O15169 862 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 CPNE3O75131 537 aaKnown RBP9.52□□□□□ -0.89
USP54-206ENST00000433394 DGAT1O75907 488 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 TAGLNQ01995 201 aaKnown RBP9.52□□□□□ -0.89
USP54-206ENST00000433394 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.52□□□□□ -0.89
USP54-206ENST00000433394 FAM26DQ5JW98 314 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 PDE12Q6L8Q7 609 aaKnown RBP9.52□□□□□ -0.89
USP54-206ENST00000433394 CSRNP1Q96S65 589 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 ZIC5Q96T25 663 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 SPG7Q9UQ90 795 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 BCS1LQ9Y276 419 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 DYRK1BQ9Y463 629 aa9.52□□□□□ -0.89
USP54-206ENST00000433394 F11P03951 625 aa9.51□□□□□ -0.89
USP54-206ENST00000433394 ATP4AP20648 1035 aa9.51□□□□□ -0.89
USP54-206ENST00000433394 ZNF280CQ8ND82 737 aa9.51□□□□□ -0.89
USP54-206ENST00000433394 RTCBQ9Y3I0 505 aaKnown RBP9.51□□□□□ -0.89
USP54-206ENST00000433394 SOS2Q07890 1332 aaPredicted RBP9.51□□□□□ -0.89
USP54-206ENST00000433394 MAN1A2O60476 641 aa9.5□□□□□ -0.89
USP54-206ENST00000433394 FIGNL1Q6PIW4 674 aa9.5□□□□□ -0.89
USP54-206ENST00000433394 NLRP8Q86W28 1048 aa9.5□□□□□ -0.89
USP54-206ENST00000433394 SNX29Q8TEQ0 813 aa9.5□□□□□ -0.89
USP54-206ENST00000433394 GAS2L1Q99501 681 aaPredicted RBP9.5□□□□□ -0.89
USP54-206ENST00000433394 GPAMQ9HCL2 828 aa9.5□□□□□ -0.89
USP54-206ENST00000433394 EIF1AYO14602 144 aaKnown RBP9.49□□□□□ -0.89
USP54-206ENST00000433394 SCAMP3O14828 347 aaKnown RBP9.49□□□□□ -0.89
USP54-206ENST00000433394 BMP1P13497 986 aa9.49□□□□□ -0.89
USP54-206ENST00000433394 INPP5BP32019 993 aa9.49□□□□□ -0.89
USP54-206ENST00000433394 SMCPP49901 116 aaPredicted RBP9.49□□□□□ -0.89
USP54-206ENST00000433394 TMC4Q7Z404 712 aa9.49□□□□□ -0.89
USP54-206ENST00000433394 CRISPLD1Q9H336 500 aa9.49□□□□□ -0.89
USP54-206ENST00000433394 C11orf16Q9NQ32 467 aa9.49□□□□□ -0.89
USP54-206ENST00000433394 NLRP2Q9NX02 1062 aa9.49□□□□□ -0.89
USP54-206ENST00000433394 IGHA2P01877 340 aa9.48□□□□□ -0.89
USP54-206ENST00000433394 GNA15P30679 374 aa9.48□□□□□ -0.89
USP54-206ENST00000433394 DAB2P98082 770 aa9.48□□□□□ -0.89
USP54-206ENST00000433394 LBRQ14739 615 aaKnown RBP9.48□□□□□ -0.89
USP54-206ENST00000433394 TMEM87AQ8NBN3 555 aa9.48□□□□□ -0.89
USP54-206ENST00000433394 C7orf43Q8WVR3 580 aa9.48□□□□□ -0.89
USP54-206ENST00000433394 PMEPA1Q969W9 287 aa9.48□□□□□ -0.89
USP54-206ENST00000433394 ZFP42Q96MM3 310 aa9.48□□□□□ -0.89
USP54-206ENST00000433394 GGNBP2Q9H3C7 697 aa9.48□□□□□ -0.89
USP54-206ENST00000433394 DMGDHQ9UI17 866 aaKnown RBP9.48□□□□□ -0.89
USP54-206ENST00000433394 OPLAHO14841 1288 aa9.47□□□□□ -0.89
USP54-206ENST00000433394 PHACTR2O75167 634 aa9.47□□□□□ -0.89
USP54-206ENST00000433394 XKR5Q6UX68 686 aa9.47□□□□□ -0.89
USP54-206ENST00000433394 RUBCNLQ9H714 662 aa9.47□□□□□ -0.89
USP54-206ENST00000433394 H7C1W4 665 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 GIPC1O14908 333 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 XYLBO75191 536 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 RECKO95980 971 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 ORC1Q13415 861 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 MRPL58Q14197 206 aaKnown RBP9.46□□□□□ -0.9
USP54-206ENST00000433394 BACH2Q9BYV9 841 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 ELP3Q9H9T3 547 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 BRD7Q9NPI1 651 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 IGSF5Q9NSI5 407 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 WWC3Q9ULE0 1092 aa9.46□□□□□ -0.9
USP54-206ENST00000433394 TNFRSF21O75509 655 aa9.45□□□□□ -0.9
USP54-206ENST00000433394 TYRO3Q06418 890 aa9.45□□□□□ -0.9
USP54-206ENST00000433394 SAMD5Q5TGI4 173 aa9.45□□□□□ -0.9
USP54-206ENST00000433394 TTC39BQ5VTQ0 682 aaPredicted RBP9.45□□□□□ -0.9
USP54-206ENST00000433394 RIPOR1Q6ZS17 1223 aa9.45□□□□□ -0.9
USP54-206ENST00000433394 A6NHS1 94 aa9.44□□□□□ -0.9
USP54-206ENST00000433394 EIF4BP23588 611 aaKnown RBP9.44□□□□□ -0.9
USP54-206ENST00000433394 TRIM46Q7Z4K8 759 aa9.44□□□□□ -0.9
USP54-206ENST00000433394 FAM161BQ96MY7 647 aa9.44□□□□□ -0.9
USP54-206ENST00000433394 PPP4R2Q9NY27 417 aa9.44□□□□□ -0.9
USP54-206ENST00000433394 NLRP13Q86W25 1043 aa9.43□□□□□ -0.9
USP54-206ENST00000433394 CRIPAKQ8N1N5 446 aa9.43□□□□□ -0.9
USP54-206ENST00000433394 PNMA5Q96PV4 448 aa9.43□□□□□ -0.9
USP54-206ENST00000433394 ABI2Q9NYB9 513 aaPredicted RBP9.43□□□□□ -0.9
USP54-206ENST00000433394 USP35Q9P2H5 1018 aa9.43□□□□□ -0.9
USP54-206ENST00000433394 KCNH4Q9UQ05 1017 aa9.43□□□□□ -0.9
USP54-206ENST00000433394 USP20Q9Y2K6 914 aa9.43□□□□□ -0.9
USP54-206ENST00000433394 ERCC5P28715 1186 aaPredicted RBP9.42□□□□□ -0.9
USP54-206ENST00000433394 SENP2Q9HC62 589 aa9.42□□□□□ -0.9
USP54-206ENST00000433394 METTL5Q9NRN9 209 aaKnown RBP9.42□□□□□ -0.9
USP54-206ENST00000433394 DNMT3LQ9UJW3 386 aa9.42□□□□□ -0.9
USP54-206ENST00000433394 AK5Q9Y6K8 562 aa9.42□□□□□ -0.9
USP54-206ENST00000433394 PHF20L1A8MW92 1017 aa9.41□□□□□ -0.9
USP54-206ENST00000433394 ATXN7O15265 892 aaPredicted RBP9.41□□□□□ -0.9
USP54-206ENST00000433394 ZC3H6P61129 1189 aaKnown RBP9.41□□□□□ -0.9
USP54-206ENST00000433394 NEUROD1Q13562 356 aa9.41□□□□□ -0.9
USP54-206ENST00000433394 KIFC2Q96AC6 838 aa9.41□□□□□ -0.9
USP54-206ENST00000433394 CCDC74AQ96AQ1 378 aa9.41□□□□□ -0.9
USP54-206ENST00000433394 CRELD1Q96HD1 420 aa9.41□□□□□ -0.9
USP54-206ENST00000433394 SRCIN1Q9C0H9 1055 aa9.41□□□□□ -0.9
USP54-206ENST00000433394 ZFYVE28Q9HCC9 887 aa9.41□□□□□ -0.9
USP54-206ENST00000433394 FOXD3Q9UJU5 478 aaPredicted RBP9.41□□□□□ -0.9
USP54-206ENST00000433394 KCNMB2Q9Y691 235 aa9.41□□□□□ -0.9
USP54-206ENST00000433394 GADD45BO75293 160 aaPredicted RBP9.4□□□□□ -0.9
USP54-206ENST00000433394 EGFRP00533 1210 aa9.4□□□□□ -0.9
USP54-206ENST00000433394 CES1P23141 567 aa9.4□□□□□ -0.9
USP54-206ENST00000433394 TRIP4Q15650 581 aaPredicted RBP9.4□□□□□ -0.9
USP54-206ENST00000433394 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms