RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ALS2CR12Q96Q35 445 aa17.72■□□□□ 0.43
PTPRF-206ENST00000429895 STX8Q9UNK0 236 aa17.72■□□□□ 0.43
PTPRF-206ENST00000429895 PICALMQ13492 652 aa17.71■□□□□ 0.43
PTPRF-206ENST00000429895 WASLO00401 505 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-206ENST00000429895 UBA7P41226 1012 aa17.71■□□□□ 0.43
PTPRF-206ENST00000429895 STXBP4Q6ZWJ1 553 aa17.71■□□□□ 0.43
PTPRF-206ENST00000429895 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.71■□□□□ 0.43
PTPRF-206ENST00000429895 C11orf95C9JLR9 678 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-206ENST00000429895 ORC3Q9UBD5 711 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-206ENST00000429895 USP25Q9UHP3 1055 aa17.71■□□□□ 0.43
PTPRF-206ENST00000429895 PABPN1LA6NDY0 278 aaKnown RBP17.71■□□□□ 0.43
PTPRF-206ENST00000429895 POLR3GO15318 223 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-206ENST00000429895 SMC1AQ14683 1233 aaKnown RBP17.71■□□□□ 0.43
PTPRF-206ENST00000429895 CEP63Q96MT8 703 aa17.71■□□□□ 0.43
PTPRF-206ENST00000429895 HOMER2Q9NSB8 354 aa17.71■□□□□ 0.43
PTPRF-206ENST00000429895 FAM83GA6ND36 823 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 TBCAO75347 108 aaKnown RBP17.7■□□□□ 0.42
PTPRF-206ENST00000429895 ECHDC1Q9NTX5 307 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 TSPY3P0CV98 308 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 TSPY8P0CW00 308 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 CRNKL1Q9BZJ0 848 aaKnown RBP17.7■□□□□ 0.42
PTPRF-206ENST00000429895 CCDC174Q6PII3 467 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 CTAGE5O15320 804 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 ANKRD24Q8TF21 1146 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 TTC21AQ8NDW8 1320 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 KIF2AO00139 706 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-206ENST00000429895 GRIPAP1Q4V328 841 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 NCOA7Q8NI08 942 aa17.7■□□□□ 0.42
PTPRF-206ENST00000429895 RGS22Q8NE09 1264 aa17.69■□□□□ 0.42
PTPRF-206ENST00000429895 TAOK3Q9H2K8 898 aa17.69■□□□□ 0.42
PTPRF-206ENST00000429895 SYNCQ9H7C4 482 aa17.69■□□□□ 0.42
PTPRF-206ENST00000429895 MPHOSPH6Q99547 160 aaKnown RBP17.69■□□□□ 0.42
PTPRF-206ENST00000429895 SERPINA10Q9UK55 444 aa17.69■□□□□ 0.42
PTPRF-206ENST00000429895 NEK1Q96PY6 1258 aa17.69■□□□□ 0.42
PTPRF-206ENST00000429895 TEX13AQ9BXU3 409 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-206ENST00000429895 PI4KAP2A4QPH2 592 aa17.69■□□□□ 0.42
PTPRF-206ENST00000429895 PI4KAP1Q8N8J0 262 aa17.69■□□□□ 0.42
PTPRF-206ENST00000429895 C16orf45Q96MC5 204 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-206ENST00000429895 EXOC1Q9NV70 894 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 MCM3P25205 808 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 IFT140Q96RY7 1462 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 CBX1P83916 185 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 CCDC152Q4G0S7 254 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 PUS7Q96PZ0 661 aaKnown RBP17.68■□□□□ 0.42
PTPRF-206ENST00000429895 MAATS1Q7Z4T9 603 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 PLEKHH1Q9ULM0 1364 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 GSTO1P78417 241 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 STX1AQ16623 288 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 ZSCAN30Q86W11 494 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 FAM114A1Q8IWE2 563 aa17.68■□□□□ 0.42
PTPRF-206ENST00000429895 LRPPRCP42704 1394 aaKnown RBP17.67■□□□□ 0.42
PTPRF-206ENST00000429895 HEATR3Q7Z4Q2 680 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 TRIM47Q96LD4 638 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 PTPRCP08575 1304 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 CDK13Q14004 1512 aaKnown RBP17.67■□□□□ 0.42
PTPRF-206ENST00000429895 CYP7A1P22680 504 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 JADE2Q9NQC1 790 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 PLS1Q14651 629 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 TICAM2Q86XR7 235 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 ATP6V1AP38606 617 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 AFMP43652 599 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 LRRC2Q9BYS8 371 aa17.67■□□□□ 0.42
PTPRF-206ENST00000429895 PRDM10Q9NQV6 1147 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 ARHGEF11O15085 1522 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 TSNARE1Q96NA8 513 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 NKTRP30414 1462 aaKnown RBP17.66■□□□□ 0.42
PTPRF-206ENST00000429895 STX6O43752 255 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 TRIM27P14373 513 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 MRPS9P82933 396 aaKnown RBP17.66■□□□□ 0.42
PTPRF-206ENST00000429895 GIMAP7Q8NHV1 300 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 SLC4A4Q9Y6R1 1079 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 FSD2A1L4K1 749 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 MAP3K9P80192 1104 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 WTAPQ15007 396 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 NAA15Q9BXJ9 866 aaKnown RBP17.66■□□□□ 0.42
PTPRF-206ENST00000429895 ABCC11Q96J66 1382 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 RBM26Q5T8P6 1007 aaKnown RBP17.66■□□□□ 0.42
PTPRF-206ENST00000429895 ZSWIM4Q9H7M6 989 aa17.66■□□□□ 0.42
PTPRF-206ENST00000429895 POLA1P09884 1462 aaPredicted RBP17.65■□□□□ 0.42
PTPRF-206ENST00000429895 PHACTR2O75167 634 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 DPH6Q7L8W6 267 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 HSP90AA4PQ58FG1 418 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 DDX19AQ9NUU7 478 aaKnown RBP17.65■□□□□ 0.42
PTPRF-206ENST00000429895 SSX2IPQ9Y2D8 614 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 SUPT6HQ7KZ85 1726 aaKnown RBP17.65■□□□□ 0.42
PTPRF-206ENST00000429895 IFIT1BQ5T764 474 aaKnown RBP17.65■□□□□ 0.42
PTPRF-206ENST00000429895 TNPO1Q92973 898 aaKnown RBP17.65■□□□□ 0.42
PTPRF-206ENST00000429895 SNRPA1P09661 255 aaKnown RBP17.65■□□□□ 0.42
PTPRF-206ENST00000429895 ARL1P40616 181 aaPredicted RBP17.65■□□□□ 0.42
PTPRF-206ENST00000429895 CD109Q6YHK3 1445 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 FERMT1Q9BQL6 677 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 ADGRF5Q8IZF2 1346 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 RRAGBQ5VZM2 374 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 SETDB2Q96T68 719 aa17.65■□□□□ 0.42
PTPRF-206ENST00000429895 RBM27Q9P2N5 1060 aaKnown RBP17.65■□□□□ 0.42
PTPRF-206ENST00000429895 KLF18A0A0U1RQI7 1052 aa17.64■□□□□ 0.42
PTPRF-206ENST00000429895 ACTN2P35609 894 aa17.64■□□□□ 0.42
PTPRF-206ENST00000429895 TERF1P54274 439 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 MBIPQ9NS73 344 aa17.64■□□□□ 0.41
PTPRF-206ENST00000429895 VEZTQ9HBM0 779 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 1059.7 ms