RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ANAPC15P60006 121 aa11.62□□□□□ -0.55
USP54-205ENST00000424265 MAP2K1Q02750 393 aaPredicted RBP11.61□□□□□ -0.55
USP54-205ENST00000424265 VPS72Q15906 364 aa11.61□□□□□ -0.55
USP54-205ENST00000424265 MYOM1P52179 1685 aa11.61□□□□□ -0.55
USP54-205ENST00000424265 VAMP4O75379 141 aa11.61□□□□□ -0.55
USP54-205ENST00000424265 ATP6V1AP38606 617 aa11.61□□□□□ -0.55
USP54-205ENST00000424265 NOL10Q9BSC4 688 aaKnown RBP11.61□□□□□ -0.55
USP54-205ENST00000424265 DDX21Q9NR30 783 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP54-205ENST00000424265 TBC1D2Q9BYX2 928 aa11.61□□□□□ -0.55
USP54-205ENST00000424265 G3V3G9 751 aa11.61□□□□□ -0.55
USP54-205ENST00000424265 IFIT2P09913 472 aaKnown RBP11.61□□□□□ -0.55
USP54-205ENST00000424265 DCAF8Q5TAQ9 597 aa11.61□□□□□ -0.55
USP54-205ENST00000424265 BCL2L12Q9HB09 334 aa11.61□□□□□ -0.55
USP54-205ENST00000424265 ANKRD45Q5TZF3 282 aa11.6□□□□□ -0.55
USP54-205ENST00000424265 FAM196AQ6ZSG2 479 aa11.6□□□□□ -0.55
USP54-205ENST00000424265 KIF1CO43896 1103 aaKnown RBP11.6□□□□□ -0.55
USP54-205ENST00000424265 MRPL50Q8N5N7 158 aaKnown RBP11.6□□□□□ -0.55
USP54-205ENST00000424265 PRR29P0C7W0 189 aa11.6□□□□□ -0.55
USP54-205ENST00000424265 KSR2Q6VAB6 950 aa11.6□□□□□ -0.55
USP54-205ENST00000424265 PPP1R42Q7Z4L9 355 aa11.6□□□□□ -0.55
USP54-205ENST00000424265 LIG1P18858 919 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 ANKRD13DQ6ZTN6 518 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 APBB1O00213 710 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 RXRBP28702 533 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 TTC31Q49AM3 519 aaPredicted RBP11.59□□□□□ -0.55
USP54-205ENST00000424265 BARGINQ6ZT62 677 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 CREBRFQ8IUR6 639 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 C8orf58Q8NAV2 365 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 MON2Q7Z3U7 1717 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 CLASRPQ8N2M8 674 aaKnown RBP11.59□□□□□ -0.55
USP54-205ENST00000424265 AFF2P51816 1311 aa11.59□□□□□ -0.55
USP54-205ENST00000424265 A0A1B0GUL7 405 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 CAVIN1Q6NZI2 390 aaKnown RBP11.58□□□□□ -0.56
USP54-205ENST00000424265 TMEM57Q8N5G2 664 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 CWC25Q9NXE8 425 aaPredicted RBP11.58□□□□□ -0.56
USP54-205ENST00000424265 SETD1AO15047 1707 aaKnown RBP11.58□□□□□ -0.56
USP54-205ENST00000424265 HSPA1LP34931 641 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 EIF4A1P60842 406 aaKnown RBP11.58□□□□□ -0.56
USP54-205ENST00000424265 TXLNBQ8N3L3 684 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 IL17REQ8NFR9 667 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 TRIM27P14373 513 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 SEMA3FQ13275 785 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 CCDC57Q2TAC2 916 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 RUFY2Q8WXA3 655 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 ACSBG1Q96GR2 724 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 FEZ2Q9UHY8 353 aaPredicted RBP11.58□□□□□ -0.56
USP54-205ENST00000424265 ABCC6O95255 1503 aa11.58□□□□□ -0.56
USP54-205ENST00000424265 RAB11FIP3O75154 756 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 ZNF521Q96K83 1311 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 RBM6P78332 1123 aaKnown RBP11.57□□□□□ -0.56
USP54-205ENST00000424265 SLC39A6Q13433 755 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 LGR6Q9HBX8 967 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 CHPF2Q9P2E5 772 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 NALCNQ8IZF0 1738 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 ANKRD26Q9UPS8 1709 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 MYD88Q99836 296 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 BRPF1P55201 1214 aaPredicted RBP11.57□□□□□ -0.56
USP54-205ENST00000424265 CT47A1Q5JQC4 288 aaPredicted RBP11.57□□□□□ -0.56
USP54-205ENST00000424265 LINS1Q8NG48 757 aa11.57□□□□□ -0.56
USP54-205ENST00000424265 RTCBQ9Y3I0 505 aaKnown RBP11.57□□□□□ -0.56
USP54-205ENST00000424265 NBPF14Q5TI25 921 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 RPAINQ86UA6 219 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 FLAD1Q8NFF5 587 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 NYXQ9GZU5 481 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 AXIN2Q9Y2T1 843 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 RFC4P35249 363 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 GAS2L3Q86XJ1 694 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 ANKRD20A12PQ8NF67 263 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 FOXD4L1Q9NU39 408 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 MAP3K2Q9Y2U5 619 aa11.56□□□□□ -0.56
USP54-205ENST00000424265 DHX16O60231 1041 aaKnown RBP11.56□□□□□ -0.56
USP54-205ENST00000424265 PRIM1P49642 420 aaKnown RBP11.56□□□□□ -0.56
USP54-205ENST00000424265 SURF6O75683 361 aaKnown RBP11.56□□□□□ -0.56
USP54-205ENST00000424265 NOLC1Q14978 699 aaKnown RBP eCLIP11.56□□□□□ -0.56
USP54-205ENST00000424265 TRMT2AQ8IZ69 625 aaKnown RBP11.55□□□□□ -0.56
USP54-205ENST00000424265 SYAP1Q96A49 352 aaPredicted RBP11.55□□□□□ -0.56
USP54-205ENST00000424265 RAI14Q9P0K7 980 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 CASQ1P31415 396 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 NBPF5PQ86XG9 351 aaPredicted RBP11.55□□□□□ -0.56
USP54-205ENST00000424265 GIMAP7Q8NHV1 300 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 AKAP12Q02952 1782 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 TTC36A6NLP5 189 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 TERF2Q15554 542 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 XAGE3Q8WTP9 111 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 PI4KAP2A4QPH2 592 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 TPM4P67936 248 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 BIRC2Q13490 618 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 PARP10Q53GL7 1025 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 KRT27Q7Z3Y8 459 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 PI4KAP1Q8N8J0 262 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 CCNL1Q9UK58 526 aaPredicted RBP11.55□□□□□ -0.56
USP54-205ENST00000424265 SPATA31A1Q5TZJ5 1347 aa11.55□□□□□ -0.56
USP54-205ENST00000424265 GJD4Q96KN9 370 aaPredicted RBP11.54□□□□□ -0.56
USP54-205ENST00000424265 CCDC87Q9NVE4 849 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 GNL3LQ9NVN8 582 aaKnown RBP11.54□□□□□ -0.56
USP54-205ENST00000424265 IGHMBP2P38935 993 aaKnown RBP11.54□□□□□ -0.56
USP54-205ENST00000424265 PLBD2Q8NHP8 589 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 SUFUQ9UMX1 484 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 BAG6P46379 1132 aa11.54□□□□□ -0.56
USP54-205ENST00000424265 VPS37DQ86XT2 251 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms