RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, human

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13A-208	ENST00000423463	SFSWAP	Q12872	951 aa	Known RBP	4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	BTLA	Q7Z6A9	289 aa		4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	SOGA1	O94964	1423 aa		4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	EFS	O43281	561 aa		4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	BMP4	P12644	408 aa		4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	LOR	P23490	312 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	C16orf46	Q6P387	395 aa		4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	ETFBKMT	Q8IXQ9	262 aa		4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	UST	Q9Y2C2	406 aa		4.2	□□□□□ -1.74
VPS13A-208	ENST00000423463	TGFBR3L	H3BV60	316 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	FAM157B	P0CG42	384 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	SAMD5	Q5TGI4	173 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	ANO2	Q9NQ90	1003 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	PHF24	Q9UPV7	400 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	WRN	Q14191	1432 aa	Predicted RBP eCLIP	4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	GRN	P28799	593 aa	Known RBP	4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	SERPINB4	P48594	390 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	IDH3A	P50213	366 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	PCBP4	P57723	403 aa	Known RBP	4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	SVOP	Q8N4V2	548 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	MYO19	Q96H55	970 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	CFHR5	Q9BXR6	569 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	POLA1	P09884	1462 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	CUX1	P39880	1505 aa		4.19	□□□□□ -1.74
VPS13A-208	ENST00000423463	TNFRSF10B	O14763	440 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	ZBTB39	O15060	712 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	ABL1	P00519	1130 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	SRSF11	Q05519	484 aa	Known RBP	4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	ZNF211	Q13398	564 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	TREML1	Q86YW5	311 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	HOMEZ	Q8IX15	550 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	RGL4	Q8IZJ4	473 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	IFT43	Q96FT9	208 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	SLC30A3	Q99726	388 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	MARK1	Q9P0L2	795 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	DMGDH	Q9UI17	866 aa	Known RBP	4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	FGD5	Q6ZNL6	1462 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	PTCD1	O75127	700 aa	Known RBP	4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	C11orf91	Q3C1V1	193 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	C1orf229	Q6ZS94	237 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	ATCAY	Q86WG3	371 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	ZSCAN1	Q8NBB4	408 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	GTF3C2	Q8WUA4	911 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	ACD	Q96AP0	544 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	ANKIB1	Q9P2G1	1089 aa		4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	GPC6	Q9Y625	555 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13A-208	ENST00000423463	RAD54L2	Q9Y4B4	1467 aa		4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	NEURL1B	A8MQ27	555 aa		4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	SLURP2	P0DP57	97 aa		4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	LYPD4	Q6UWN0	246 aa		4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	ZNF608	Q9ULD9	1512 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	TDRD9	Q8NDG6	1382 aa	Known RBP	4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	MICAL2	O94851	1124 aa		4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	KRT25	Q7Z3Z0	450 aa		4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	OXCT2	Q9BYC2	517 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	PRR12	Q9ULL5	1215 aa		4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	AQR	O60306	1485 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
VPS13A-208	ENST00000423463	MPST	P25325	297 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	INPP5B	P32019	993 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	SPEM2	Q0P670	501 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	IER5	Q5VY09	327 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	ZNF385C	Q66K41	422 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	COL26A1	Q96A83	441 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.16	□□□□□ -1.74	2e-8	■■■■■ 167.7
VPS13A-208	ENST00000423463	GGA1	Q9UJY5	639 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	TARBP1	Q13395	1621 aa	Known RBP	4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	OPLAH	O14841	1288 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	INSM1	Q01101	510 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	HIF1A	Q16665	826 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	BHMT	Q93088	406 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	STIM2	Q9P246	746 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	KLF15	Q9UIH9	416 aa		4.16	□□□□□ -1.74
VPS13A-208	ENST00000423463	CELA2B	P08218	269 aa	Predicted RBP	4.15	□□□□□ -1.74
VPS13A-208	ENST00000423463	BRD2	P25440	801 aa	Known RBP	4.15	□□□□□ -1.74
VPS13A-208	ENST00000423463	TBC1D8B	Q0IIM8	1120 aa		4.15	□□□□□ -1.74
VPS13A-208	ENST00000423463	SYT9	Q86SS6	491 aa		4.15	□□□□□ -1.74
VPS13A-208	ENST00000423463	HELQ	Q8TDG4	1101 aa		4.15	□□□□□ -1.74
VPS13A-208	ENST00000423463	IGFLR1	Q9H665	355 aa		4.15	□□□□□ -1.74
VPS13A-208	ENST00000423463	NSFL1C	Q9UNZ2	370 aa	Known RBP	4.15	□□□□□ -1.74
VPS13A-208	ENST00000423463	TOP2B	Q02880	1626 aa		4.15	□□□□□ -1.74
VPS13A-208	ENST00000423463	ABCA10	Q8WWZ4	1543 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	SHISA8	B8ZZ34	492 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	ZAP70	P43403	619 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	ARSD	P51689	593 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	TRIP4	Q15650	581 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	ZNF468	Q5VIY5	522 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	FCHSD1	Q86WN1	690 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	CMTR1	Q8N1G2	835 aa	Known RBP	4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	GPR152	Q8TDT2	470 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	KCNH4	Q9UQ05	1017 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	RTCB	Q9Y3I0	505 aa	Known RBP	4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	NFKB1	P19838	968 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	TARS	P26639	723 aa	Known RBP	4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	MAP2K3	P46734	347 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	FAM182B	Q5T319	152 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	GALNT6	Q8NCL4	622 aa		4.15	□□□□□ -1.75
VPS13A-208	ENST00000423463	WDR97	A6NE52	1622 aa		4.14	□□□□□ -1.75
VPS13A-208	ENST00000423463	BIVM-ERCC5	R4GMW8	1640 aa		4.14	□□□□□ -1.75
VPS13A-208	ENST00000423463		H3BRB1	525 aa		4.14	□□□□□ -1.75

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