RNA–Protein interactions for RNA: ENST00000422379.2

HPS4-204, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 1,942 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-204ENST00000422379 GNAI2P04899 355 aa11.25□□□□□ -0.61
HPS4-204ENST00000422379 UBTFL1P0CB47 393 aaPredicted RBP11.25□□□□□ -0.61
HPS4-204ENST00000422379 NEXNQ0ZGT2 675 aa11.25□□□□□ -0.61
HPS4-204ENST00000422379 TRIM28Q13263 835 aaKnown RBP11.25□□□□□ -0.61
HPS4-204ENST00000422379 USPL1Q5W0Q7 1092 aa11.25□□□□□ -0.61
HPS4-204ENST00000422379 CENPQQ7L2Z9 268 aaPredicted RBP11.25□□□□□ -0.61
HPS4-204ENST00000422379 NLRP10Q86W26 655 aa11.25□□□□□ -0.61
HPS4-204ENST00000422379 ZNF34Q8IZ26 560 aa11.25□□□□□ -0.61
HPS4-204ENST00000422379 TUBGCP6Q96RT7 1819 aa11.24□□□□□ -0.61
HPS4-204ENST00000422379 A0A087WZG4 1122 aa11.24□□□□□ -0.61
HPS4-204ENST00000422379 H7C1W4 665 aa11.24□□□□□ -0.61
HPS4-204ENST00000422379 MSH5O43196 834 aa11.24□□□□□ -0.61
HPS4-204ENST00000422379 GNAI3P08754 354 aa11.24□□□□□ -0.61
HPS4-204ENST00000422379 HDAC1Q13547 482 aaPredicted RBP11.24□□□□□ -0.61
HPS4-204ENST00000422379 UBE3BQ7Z3V4 1068 aa11.24□□□□□ -0.61
HPS4-204ENST00000422379 ANKRD44Q8N8A2 993 aa11.24□□□□□ -0.61
HPS4-204ENST00000422379 CWC25Q9NXE8 425 aaPredicted RBP11.24□□□□□ -0.61
HPS4-204ENST00000422379 ANKRD36CQ5JPF3 1778 aa11.24□□□□□ -0.61
HPS4-204ENST00000422379 CCDC191Q8NCU4 936 aa11.23□□□□□ -0.61
HPS4-204ENST00000422379 C9orf78Q9NZ63 289 aaPredicted RBP11.23□□□□□ -0.61
HPS4-204ENST00000422379 NARFQ9UHQ1 456 aa11.23□□□□□ -0.61
HPS4-204ENST00000422379 USP42Q9H9J4 1324 aaKnown RBP11.23□□□□□ -0.61
HPS4-204ENST00000422379 SUSD4Q5VX71 490 aa11.23□□□□□ -0.61
HPS4-204ENST00000422379 TBC1D9BQ66K14 1250 aa11.23□□□□□ -0.61
HPS4-204ENST00000422379 FAM89AQ96GI7 184 aa11.23□□□□□ -0.61
HPS4-204ENST00000422379 BICC1Q9H694 974 aaKnown RBP11.23□□□□□ -0.61
HPS4-204ENST00000422379 TRAPPC3LQ5T215 181 aa11.22□□□□□ -0.61
HPS4-204ENST00000422379 FOXO4P98177 505 aa11.21□□□□□ -0.61
HPS4-204ENST00000422379 COL23A1Q86Y22 540 aaPredicted RBP11.21□□□□□ -0.61
HPS4-204ENST00000422379 PDGFDQ9GZP0 370 aaPredicted RBP11.21□□□□□ -0.61
HPS4-204ENST00000422379 PNPLA7Q6ZV29 1317 aa11.21□□□□□ -0.61
HPS4-204ENST00000422379 FAM177BA6PVY3 158 aa11.21□□□□□ -0.62
HPS4-204ENST00000422379 GYS1P13807 737 aa11.21□□□□□ -0.62
HPS4-204ENST00000422379 SSFA2P28290 1259 aa11.21□□□□□ -0.62
HPS4-204ENST00000422379 ATP8B2P98198 1209 aa11.21□□□□□ -0.62
HPS4-204ENST00000422379 PPP1R42Q7Z4L9 355 aa11.21□□□□□ -0.62
HPS4-204ENST00000422379 NPM2Q86SE8 214 aaKnown RBP11.21□□□□□ -0.62
HPS4-204ENST00000422379 CHMP4BQ9H444 224 aaKnown RBP11.21□□□□□ -0.62
HPS4-204ENST00000422379 NIP7Q9Y221 180 aaKnown RBP eCLIP11.21□□□□□ -0.62
HPS4-204ENST00000422379 NTSR2O95665 410 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 RFC4P35249 363 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 MTX1Q13505 466 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 POLA2Q14181 598 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 HSP90AB3PQ58FF7 597 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 CLEC4GQ6UXB4 293 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 BICDL1Q6ZP65 573 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 RPAP2Q8IXW5 612 aaPredicted RBP11.2□□□□□ -0.62
HPS4-204ENST00000422379 SMC5Q8IY18 1101 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 ZBTB38Q8NAP3 1195 aaPredicted RBP11.2□□□□□ -0.62
HPS4-204ENST00000422379 TFCP2L1Q9NZI6 479 aa11.2□□□□□ -0.62
HPS4-204ENST00000422379 PCCAP05165 728 aaPredicted RBP11.19□□□□□ -0.62
HPS4-204ENST00000422379 RABL6Q3YEC7 729 aaPredicted RBP11.19□□□□□ -0.62
HPS4-204ENST00000422379 NUTM1Q86Y26 1132 aa11.19□□□□□ -0.62
HPS4-204ENST00000422379 SSH3Q8TE77 659 aa11.19□□□□□ -0.62
HPS4-204ENST00000422379 RWDD1Q9H446 243 aaPredicted RBP11.19□□□□□ -0.62
HPS4-204ENST00000422379 ZPR1O75312 459 aa11.19□□□□□ -0.62
HPS4-204ENST00000422379 BAG6P46379 1132 aa11.19□□□□□ -0.62
HPS4-204ENST00000422379 NFIXQ14938 502 aa11.19□□□□□ -0.62
HPS4-204ENST00000422379 C3orf67Q6ZVT6 689 aa11.19□□□□□ -0.62
HPS4-204ENST00000422379 KLHDC4Q8TBB5 520 aa11.19□□□□□ -0.62
HPS4-204ENST00000422379 UPF1Q92900 1129 aaKnown RBP eCLIP11.19□□□□□ -0.62
HPS4-204ENST00000422379 TRMT112Q9UI30 125 aaKnown RBP11.19□□□□□ -0.62
HPS4-204ENST00000422379 COL24A1Q17RW2 1714 aa11.19□□□□□ -0.62
HPS4-204ENST00000422379 ABCC12Q96J65 1359 aa11.18□□□□□ -0.62
HPS4-204ENST00000422379 COL4A1P02462 1669 aa11.18□□□□□ -0.62
HPS4-204ENST00000422379 SRGAP3O43295 1099 aa11.18□□□□□ -0.62
HPS4-204ENST00000422379 RFX5P48382 616 aaPredicted RBP11.18□□□□□ -0.62
HPS4-204ENST00000422379 SLC15A2Q16348 729 aa11.18□□□□□ -0.62
HPS4-204ENST00000422379 ILDR2Q71H61 639 aa11.18□□□□□ -0.62
HPS4-204ENST00000422379 CCDC24Q8N4L8 307 aa11.18□□□□□ -0.62
HPS4-204ENST00000422379 DCTPP1Q9H773 170 aa11.18□□□□□ -0.62
HPS4-204ENST00000422379 PA2G4Q9UQ80 394 aaKnown RBP11.18□□□□□ -0.62
HPS4-204ENST00000422379 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.18□□□□□ -0.62
HPS4-204ENST00000422379 RGL2O15211 777 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 HCLS1P14317 486 aaPredicted RBP11.17□□□□□ -0.62
HPS4-204ENST00000422379 LMBR1LQ6UX01 489 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 PDZRN3Q9UPQ7 1066 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 EXOC6BQ9Y2D4 811 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 ZNF652Q9Y2D9 606 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 IRS4O14654 1257 aaPredicted RBP11.17□□□□□ -0.62
HPS4-204ENST00000422379 PDE4AP27815 886 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 DDR1Q08345 913 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 SF3B2Q13435 895 aaKnown RBP11.17□□□□□ -0.62
HPS4-204ENST00000422379 ERFEQ4G0M1 354 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 CCDC85AQ96PX6 553 aaPredicted RBP11.17□□□□□ -0.62
HPS4-204ENST00000422379 UTP14AQ9BVJ6 771 aaKnown RBP11.17□□□□□ -0.62
HPS4-204ENST00000422379 CDHR2Q9BYE9 1310 aa11.17□□□□□ -0.62
HPS4-204ENST00000422379 DDX60Q8IY21 1712 aaKnown RBP11.16□□□□□ -0.62
HPS4-204ENST00000422379 TM4SF1P30408 202 aa11.16□□□□□ -0.62
HPS4-204ENST00000422379 PARP10Q53GL7 1025 aa11.16□□□□□ -0.62
HPS4-204ENST00000422379 CCDC125Q86Z20 511 aa11.16□□□□□ -0.62
HPS4-204ENST00000422379 PLA2G12BQ9BX93 195 aa11.16□□□□□ -0.62
HPS4-204ENST00000422379 APBB1O00213 710 aa11.15□□□□□ -0.62
HPS4-204ENST00000422379 SMARCA5O60264 1052 aaPredicted RBP11.15□□□□□ -0.62
HPS4-204ENST00000422379 CSF1RP07333 972 aa11.15□□□□□ -0.62
HPS4-204ENST00000422379 NUCB1Q02818 461 aa11.15□□□□□ -0.62
HPS4-204ENST00000422379 FAM161AQ3B820 660 aa11.15□□□□□ -0.62
HPS4-204ENST00000422379 SH3TC1Q8TE82 1336 aa11.15□□□□□ -0.62
HPS4-204ENST00000422379 PTPN12Q05209 780 aaKnown RBP11.15□□□□□ -0.62
HPS4-204ENST00000422379 MSL1Q68DK7 614 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms