RNA–Protein interactions for RNA: ENST00000421712.1

BRAT1-202, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 3

Gene BRAT1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-202ENST00000421712 SMC4Q9NTJ3 1288 aa20.09■□□□□ 0.81
BRAT1-202ENST00000421712 PDZRN3Q9UPQ7 1066 aa20.09■□□□□ 0.81
BRAT1-202ENST00000421712 BCS1LQ9Y276 419 aa20.09■□□□□ 0.81
BRAT1-202ENST00000421712 MRPL50Q8N5N7 158 aaKnown RBP20.08■□□□□ 0.81
BRAT1-202ENST00000421712 KCNA3P22001 575 aa20.07■□□□□ 0.8
BRAT1-202ENST00000421712 ALDH1L2Q3SY69 923 aa20.07■□□□□ 0.8
BRAT1-202ENST00000421712 RTL5Q5HYW3 569 aaPredicted RBP20.07■□□□□ 0.8
BRAT1-202ENST00000421712 DNAAF4Q8WXU2 420 aa20.07■□□□□ 0.8
BRAT1-202ENST00000421712 ARFGEF2Q9Y6D5 1785 aa20.07■□□□□ 0.8
BRAT1-202ENST00000421712 ADCY9O60503 1353 aa20.07■□□□□ 0.8
BRAT1-202ENST00000421712 SH3TC1Q8TE82 1336 aa20.06■□□□□ 0.8
BRAT1-202ENST00000421712 ANKRD36CQ5JPF3 1778 aa20.06■□□□□ 0.8
BRAT1-202ENST00000421712 TRIM28Q13263 835 aaKnown RBP20.06■□□□□ 0.8
BRAT1-202ENST00000421712 DALRD3Q5D0E6 543 aaKnown RBP20.06■□□□□ 0.8
BRAT1-202ENST00000421712 YTHDC1Q96MU7 727 aaKnown RBP20.06■□□□□ 0.8
BRAT1-202ENST00000421712 CWC25Q9NXE8 425 aaPredicted RBP20.06■□□□□ 0.8
BRAT1-202ENST00000421712 IBTKQ9P2D0 1353 aaPredicted RBP20.06■□□□□ 0.8
BRAT1-202ENST00000421712 F6X3S4 739 aa20.05■□□□□ 0.8
BRAT1-202ENST00000421712 YBX3P16989 372 aaKnown RBP eCLIP20.05■□□□□ 0.8
BRAT1-202ENST00000421712 CCDC191Q8NCU4 936 aa20.05■□□□□ 0.8
BRAT1-202ENST00000421712 FAM89AQ96GI7 184 aa20.05■□□□□ 0.8
BRAT1-202ENST00000421712 NLRP3Q96P20 1036 aa20.05■□□□□ 0.8
BRAT1-202ENST00000421712 GRIN3BO60391 1043 aa20.04■□□□□ 0.8
BRAT1-202ENST00000421712 HCLS1P14317 486 aaPredicted RBP20.04■□□□□ 0.8
BRAT1-202ENST00000421712 SLC4A10Q6U841 1118 aa20.04■□□□□ 0.8
BRAT1-202ENST00000421712 SYNE4Q8N205 404 aa20.04■□□□□ 0.8
BRAT1-202ENST00000421712 TTLL6Q8N841 843 aa20.04■□□□□ 0.8
BRAT1-202ENST00000421712 MASTLQ96GX5 879 aa20.04■□□□□ 0.8
BRAT1-202ENST00000421712 ABCC12Q96J65 1359 aa20.04■□□□□ 0.8
BRAT1-202ENST00000421712 RNF123Q5XPI4 1314 aa20.03■□□□□ 0.8
BRAT1-202ENST00000421712 ANKRD31Q8N7Z5 1873 aa20.03■□□□□ 0.8
BRAT1-202ENST00000421712 SRGNP10124 158 aa20.03■□□□□ 0.8
BRAT1-202ENST00000421712 CWF19L2Q2TBE0 894 aaKnown RBP20.03■□□□□ 0.8
BRAT1-202ENST00000421712 RPGRQ92834 1020 aaKnown RBP20.03■□□□□ 0.8
BRAT1-202ENST00000421712 IGKV5-2P06315 115 aa20.02■□□□□ 0.8
BRAT1-202ENST00000421712 NPR1P16066 1061 aa20.02■□□□□ 0.8
BRAT1-202ENST00000421712 RARSP54136 660 aaKnown RBP20.02■□□□□ 0.8
BRAT1-202ENST00000421712 SLC10A5Q5PT55 438 aa20.02■□□□□ 0.8
BRAT1-202ENST00000421712 ZBTB38Q8NAP3 1195 aaPredicted RBP20.02■□□□□ 0.8
BRAT1-202ENST00000421712 JARID2Q92833 1246 aaPredicted RBP20.02■□□□□ 0.8
BRAT1-202ENST00000421712 CNKSR1Q969H4 720 aa20.02■□□□□ 0.8
BRAT1-202ENST00000421712 PTPRCP08575 1304 aa20.02■□□□□ 0.79
BRAT1-202ENST00000421712 NEURL1BA8MQ27 555 aa20.01■□□□□ 0.79
BRAT1-202ENST00000421712 STYK1Q6J9G0 422 aa20.01■□□□□ 0.79
BRAT1-202ENST00000421712 LINS1Q8NG48 757 aa20.01■□□□□ 0.79
BRAT1-202ENST00000421712 ZNF219Q9P2Y4 722 aaPredicted RBP20.01■□□□□ 0.79
BRAT1-202ENST00000421712 NOB1Q9ULX3 412 aaKnown RBP20.01■□□□□ 0.79
BRAT1-202ENST00000421712 KIAA1551Q9HCM1 1747 aa20.01■□□□□ 0.79
BRAT1-202ENST00000421712 IRS4O14654 1257 aaPredicted RBP20■□□□□ 0.79
BRAT1-202ENST00000421712 HSP90B1P14625 803 aaKnown RBP20■□□□□ 0.79
BRAT1-202ENST00000421712 KLRG2A4D1S0 409 aaPredicted RBP19.99■□□□□ 0.79
BRAT1-202ENST00000421712 PCCAP05165 728 aaPredicted RBP19.99■□□□□ 0.79
BRAT1-202ENST00000421712 ARHGAP27Q6ZUM4 889 aa19.99■□□□□ 0.79
BRAT1-202ENST00000421712 RBM17Q96I25 401 aaKnown RBP19.99■□□□□ 0.79
BRAT1-202ENST00000421712 ALDH1B1P30837 517 aa19.98■□□□□ 0.79
BRAT1-202ENST00000421712 GCKRQ14397 625 aa19.98■□□□□ 0.79
BRAT1-202ENST00000421712 C3orf67Q6ZVT6 689 aa19.98■□□□□ 0.79
BRAT1-202ENST00000421712 CRY2Q49AN0 593 aa19.97■□□□□ 0.79
BRAT1-202ENST00000421712 BEND3Q5T5X7 828 aa19.97■□□□□ 0.79
BRAT1-202ENST00000421712 SRCIN1Q9C0H9 1055 aa19.97■□□□□ 0.79
BRAT1-202ENST00000421712 GOLGB1Q14789 3259 aaKnown RBP19.96■□□□□ 0.79
BRAT1-202ENST00000421712 BCAR3O75815 825 aa19.96■□□□□ 0.79
BRAT1-202ENST00000421712 PRPF40BQ6NWY9 871 aaKnown RBP19.96■□□□□ 0.79
BRAT1-202ENST00000421712 UBE3BQ7Z3V4 1068 aa19.96■□□□□ 0.79
BRAT1-202ENST00000421712 FRAT1Q92837 279 aaPredicted RBP19.96■□□□□ 0.79
BRAT1-202ENST00000421712 RIC1Q4ADV7 1423 aa19.95■□□□□ 0.78
BRAT1-202ENST00000421712 BRCA1P38398 1863 aaKnown RBP19.95■□□□□ 0.78
BRAT1-202ENST00000421712 IPO8O15397 1037 aaKnown RBP19.95■□□□□ 0.78
BRAT1-202ENST00000421712 C21orf2O43822 256 aa19.95■□□□□ 0.78
BRAT1-202ENST00000421712 PDE8AO60658 829 aa19.95■□□□□ 0.78
BRAT1-202ENST00000421712 DDX46Q7L014 1031 aaKnown RBP19.95■□□□□ 0.78
BRAT1-202ENST00000421712 API5Q9BZZ5 524 aaKnown RBP19.95■□□□□ 0.78
BRAT1-202ENST00000421712 C9orf78Q9NZ63 289 aaPredicted RBP19.95■□□□□ 0.78
BRAT1-202ENST00000421712 COL11A2P13942 1736 aaPredicted RBP19.95■□□□□ 0.78
BRAT1-202ENST00000421712 KIF16BQ96L93 1317 aa19.95■□□□□ 0.78
BRAT1-202ENST00000421712 TNRC6CQ9HCJ0 1690 aaKnown RBP19.94■□□□□ 0.78
BRAT1-202ENST00000421712 DLEC1Q9Y238 1755 aa19.94■□□□□ 0.78
BRAT1-202ENST00000421712 ALDH1L1O75891 902 aa19.94■□□□□ 0.78
BRAT1-202ENST00000421712 BRPF1P55201 1214 aaPredicted RBP19.94■□□□□ 0.78
BRAT1-202ENST00000421712 H7C1W4 665 aa19.93■□□□□ 0.78
BRAT1-202ENST00000421712 HOXA10P31260 410 aaPredicted RBP19.93■□□□□ 0.78
BRAT1-202ENST00000421712 CRAMP1Q96RY5 1269 aa19.93■□□□□ 0.78
BRAT1-202ENST00000421712 SF3B3Q15393 1217 aaKnown RBP19.92■□□□□ 0.78
BRAT1-202ENST00000421712 CCDC85AQ96PX6 553 aaPredicted RBP19.92■□□□□ 0.78
BRAT1-202ENST00000421712 TMX4Q9H1E5 349 aaPredicted RBP19.92■□□□□ 0.78
BRAT1-202ENST00000421712 CDHR2Q9BYE9 1310 aa19.92■□□□□ 0.78
BRAT1-202ENST00000421712 CACNA1SQ13698 1873 aa19.92■□□□□ 0.78
BRAT1-202ENST00000421712 CCDC152Q4G0S7 254 aa19.91■□□□□ 0.78
BRAT1-202ENST00000421712 ARHGAP45Q92619 1136 aa19.91■□□□□ 0.78
BRAT1-202ENST00000421712 SLX4Q8IY92 1834 aa19.9■□□□□ 0.78
BRAT1-202ENST00000421712 GRM8O00222 908 aa19.9■□□□□ 0.78
BRAT1-202ENST00000421712 PPEF1O14829 653 aaPredicted RBP19.9■□□□□ 0.78
BRAT1-202ENST00000421712 SOGA3Q5TF21 947 aa19.9■□□□□ 0.78
BRAT1-202ENST00000421712 ARFGEF1Q9Y6D6 1849 aa19.9■□□□□ 0.78
BRAT1-202ENST00000421712 ABCC4O15439 1325 aa19.89■□□□□ 0.77
BRAT1-202ENST00000421712 CCT4P50991 539 aaKnown RBP19.89■□□□□ 0.77
BRAT1-202ENST00000421712 CTSWP56202 376 aa19.89■□□□□ 0.77
BRAT1-202ENST00000421712 DDX60Q8IY21 1712 aaKnown RBP19.89■□□□□ 0.77
BRAT1-202ENST00000421712 LAMB2P55268 1798 aa19.88■□□□□ 0.77
BRAT1-202ENST00000421712 BBOX1O75936 387 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms