RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PARP10Q53GL7 1025 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 NLRP10Q86W26 655 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 NUTM1Q86Y26 1132 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 MYD88Q99836 296 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 BCL2L13Q9BXK5 485 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 MAP3K2Q9Y2U5 619 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 DDX60Q8IY21 1712 aaKnown RBP15.97■□□□□ 0.15
SKA1-203ENST00000417656 PI4KAP2A4QPH2 592 aa15.96■□□□□ 0.15
SKA1-203ENST00000417656 ABCB7O75027 752 aa15.96■□□□□ 0.15
SKA1-203ENST00000417656 TGFB2P61812 414 aa15.96■□□□□ 0.15
SKA1-203ENST00000417656 KSR2Q6VAB6 950 aa15.96■□□□□ 0.15
SKA1-203ENST00000417656 TPTE2Q6XPS3 522 aa15.96■□□□□ 0.15
SKA1-203ENST00000417656 PELP1Q8IZL8 1130 aaKnown RBP15.96■□□□□ 0.15
SKA1-203ENST00000417656 PI4KAP1Q8N8J0 262 aa15.96■□□□□ 0.15
SKA1-203ENST00000417656 ISCA1Q9BUE6 129 aa15.96■□□□□ 0.15
SKA1-203ENST00000417656 NYXQ9GZU5 481 aa15.96■□□□□ 0.15
SKA1-203ENST00000417656 RIC1Q4ADV7 1423 aa15.95■□□□□ 0.14
SKA1-203ENST00000417656 GTF2E1P29083 439 aaPredicted RBP15.95■□□□□ 0.14
SKA1-203ENST00000417656 ERFEQ4G0M1 354 aa15.95■□□□□ 0.14
SKA1-203ENST00000417656 PPP1R42Q7Z4L9 355 aa15.95■□□□□ 0.14
SKA1-203ENST00000417656 SSH1Q8WYL5 1049 aa15.95■□□□□ 0.14
SKA1-203ENST00000417656 METTL22Q9BUU2 404 aaPredicted RBP15.95■□□□□ 0.14
SKA1-203ENST00000417656 BRIP1Q9BX63 1249 aa15.95■□□□□ 0.14
SKA1-203ENST00000417656 ARFGEF1Q9Y6D6 1849 aa15.94■□□□□ 0.14
SKA1-203ENST00000417656 CT47B1P0C2W7 299 aaPredicted RBP15.94■□□□□ 0.14
SKA1-203ENST00000417656 C2CD5Q86YS7 1000 aa15.94■□□□□ 0.14
SKA1-203ENST00000417656 MRPL50Q8N5N7 158 aaKnown RBP15.94■□□□□ 0.14
SKA1-203ENST00000417656 UTP14AQ9BVJ6 771 aaKnown RBP15.94■□□□□ 0.14
SKA1-203ENST00000417656 SMC4Q9NTJ3 1288 aa15.94■□□□□ 0.14
SKA1-203ENST00000417656 YBX3P16989 372 aaKnown RBP eCLIP15.93■□□□□ 0.14
SKA1-203ENST00000417656 KCNA3P22001 575 aa15.93■□□□□ 0.14
SKA1-203ENST00000417656 PDE6BP35913 854 aa15.93■□□□□ 0.14
SKA1-203ENST00000417656 SAMD1Q6SPF0 538 aaPredicted RBP15.93■□□□□ 0.14
SKA1-203ENST00000417656 RNF123Q5XPI4 1314 aa15.93■□□□□ 0.14
SKA1-203ENST00000417656 F6X3S4 739 aa15.92■□□□□ 0.14
SKA1-203ENST00000417656 GPR162Q16538 588 aa15.92■□□□□ 0.14
SKA1-203ENST00000417656 ALDH1L2Q3SY69 923 aa15.92■□□□□ 0.14
SKA1-203ENST00000417656 DNAAF4Q8WXU2 420 aa15.92■□□□□ 0.14
SKA1-203ENST00000417656 TRMT112Q9UI30 125 aaKnown RBP15.92■□□□□ 0.14
SKA1-203ENST00000417656 SH3TC1Q8TE82 1336 aa15.92■□□□□ 0.14
SKA1-203ENST00000417656 H0YIN7 160 aa15.91■□□□□ 0.14
SKA1-203ENST00000417656 IGKV5-2P06315 115 aa15.91■□□□□ 0.14
SKA1-203ENST00000417656 NEXNQ0ZGT2 675 aa15.91■□□□□ 0.14
SKA1-203ENST00000417656 TRIM28Q13263 835 aaKnown RBP15.91■□□□□ 0.14
SKA1-203ENST00000417656 SYNE4Q8N205 404 aa15.91■□□□□ 0.14
SKA1-203ENST00000417656 RARSP54136 660 aaKnown RBP15.9■□□□□ 0.14
SKA1-203ENST00000417656 CWF19L2Q2TBE0 894 aaKnown RBP15.9■□□□□ 0.14
SKA1-203ENST00000417656 C3orf67Q6ZVT6 689 aa15.9■□□□□ 0.14
SKA1-203ENST00000417656 YTHDC1Q96MU7 727 aaKnown RBP15.9■□□□□ 0.14
SKA1-203ENST00000417656 CWC25Q9NXE8 425 aaPredicted RBP15.9■□□□□ 0.14
SKA1-203ENST00000417656 PIM2Q9P1W9 311 aa15.9■□□□□ 0.14
SKA1-203ENST00000417656 BCS1LQ9Y276 419 aa15.9■□□□□ 0.14
SKA1-203ENST00000417656 NEURL1BA8MQ27 555 aa15.89■□□□□ 0.13
SKA1-203ENST00000417656 SRGNP10124 158 aa15.89■□□□□ 0.13
SKA1-203ENST00000417656 RTL5Q5HYW3 569 aaPredicted RBP15.89■□□□□ 0.13
SKA1-203ENST00000417656 CCDC191Q8NCU4 936 aa15.89■□□□□ 0.13
SKA1-203ENST00000417656 ZNF622Q969S3 477 aaKnown RBP eCLIP15.89■□□□□ 0.137e-12■□□□□ 9.8
SKA1-203ENST00000417656 FAM89AQ96GI7 184 aa15.89■□□□□ 0.13
SKA1-203ENST00000417656 PDZRN3Q9UPQ7 1066 aa15.89■□□□□ 0.13
SKA1-203ENST00000417656 PTPRCP08575 1304 aa15.89■□□□□ 0.13
SKA1-203ENST00000417656 SLX4Q8IY92 1834 aa15.89■□□□□ 0.13
SKA1-203ENST00000417656 KLRG2A4D1S0 409 aaPredicted RBP15.88■□□□□ 0.13
SKA1-203ENST00000417656 HCLS1P14317 486 aaPredicted RBP15.88■□□□□ 0.13
SKA1-203ENST00000417656 DALRD3Q5D0E6 543 aaKnown RBP15.88■□□□□ 0.13
SKA1-203ENST00000417656 CRY2Q49AN0 593 aa15.87■□□□□ 0.13
SKA1-203ENST00000417656 SLC10A5Q5PT55 438 aa15.87■□□□□ 0.13
SKA1-203ENST00000417656 STYK1Q6J9G0 422 aa15.87■□□□□ 0.13
SKA1-203ENST00000417656 ZBTB38Q8NAP3 1195 aaPredicted RBP15.87■□□□□ 0.13
SKA1-203ENST00000417656 LINS1Q8NG48 757 aa15.87■□□□□ 0.13
SKA1-203ENST00000417656 JARID2Q92833 1246 aaPredicted RBP15.87■□□□□ 0.13
SKA1-203ENST00000417656 MASTLQ96GX5 879 aa15.87■□□□□ 0.13
SKA1-203ENST00000417656 MYH3P11055 1940 aa15.87■□□□□ 0.13
SKA1-203ENST00000417656 GOLGB1Q14789 3259 aaKnown RBP15.86■□□□□ 0.13
SKA1-203ENST00000417656 IRS4O14654 1257 aaPredicted RBP15.86■□□□□ 0.13
SKA1-203ENST00000417656 PCCAP05165 728 aaPredicted RBP15.86■□□□□ 0.13
SKA1-203ENST00000417656 NPR1P16066 1061 aa15.86■□□□□ 0.13
SKA1-203ENST00000417656 BEND3Q5T5X7 828 aa15.86■□□□□ 0.13
SKA1-203ENST00000417656 SLC4A10Q6U841 1118 aa15.86■□□□□ 0.13
SKA1-203ENST00000417656 TTLL6Q8N841 843 aa15.86■□□□□ 0.13
SKA1-203ENST00000417656 KIF16BQ96L93 1317 aa15.86■□□□□ 0.13
SKA1-203ENST00000417656 COL4A1P02462 1669 aa15.86■□□□□ 0.13
SKA1-203ENST00000417656 BRPF1P55201 1214 aaPredicted RBP15.85■□□□□ 0.13
SKA1-203ENST00000417656 GCKRQ14397 625 aa15.85■□□□□ 0.13
SKA1-203ENST00000417656 PRPF40BQ6NWY9 871 aaKnown RBP15.85■□□□□ 0.13
SKA1-203ENST00000417656 RPGRQ92834 1020 aaKnown RBP15.85■□□□□ 0.13
SKA1-203ENST00000417656 NLRP3Q96P20 1036 aa15.85■□□□□ 0.13
SKA1-203ENST00000417656 NOB1Q9ULX3 412 aaKnown RBP15.85■□□□□ 0.13
SKA1-203ENST00000417656 TAF1P21675 1872 aa15.84■□□□□ 0.13
SKA1-203ENST00000417656 CHD4Q14839 1912 aa15.84■□□□□ 0.13
SKA1-203ENST00000417656 BCAR3O75815 825 aa15.84■□□□□ 0.13
SKA1-203ENST00000417656 UBE3BQ7Z3V4 1068 aa15.84■□□□□ 0.13
SKA1-203ENST00000417656 CNKSR1Q969H4 720 aa15.84■□□□□ 0.13
SKA1-203ENST00000417656 CDHR2Q9BYE9 1310 aa15.84■□□□□ 0.13
SKA1-203ENST00000417656 GRIN3BO60391 1043 aa15.83■□□□□ 0.12
SKA1-203ENST00000417656 SRCIN1Q9C0H9 1055 aa15.82■□□□□ 0.12
SKA1-203ENST00000417656 ABCC4O15439 1325 aa15.82■□□□□ 0.12
SKA1-203ENST00000417656 LRRC37AA6NMS7 1700 aa15.82■□□□□ 0.12
SKA1-203ENST00000417656 SPEF2Q9C093 1822 aa15.82■□□□□ 0.12
SKA1-203ENST00000417656 FER1L6Q2WGJ9 1857 aa15.82■□□□□ 0.12
SKA1-203ENST00000417656 H7C1W4 665 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms