RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 NBPF5PQ86XG9 351 aaPredicted RBP10.68□□□□□ -0.7
TRIM48-201ENST00000417545 NYXQ9GZU5 481 aa10.68□□□□□ -0.7
TRIM48-201ENST00000417545 CHMP4BQ9H444 224 aaKnown RBP10.68□□□□□ -0.7
TRIM48-201ENST00000417545 CWC25Q9NXE8 425 aaPredicted RBP10.68□□□□□ -0.7
TRIM48-201ENST00000417545 C9orf78Q9NZ63 289 aaPredicted RBP10.68□□□□□ -0.7
TRIM48-201ENST00000417545 PARP3Q9Y6F1 533 aa10.68□□□□□ -0.7
TRIM48-201ENST00000417545 ATP10DQ9P241 1426 aa10.68□□□□□ -0.7
TRIM48-201ENST00000417545 CARMIL3Q8ND23 1372 aa10.68□□□□□ -0.7
TRIM48-201ENST00000417545 TBC1D9BQ66K14 1250 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 LINS1Q8NG48 757 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 MTFR1LQ9H019 292 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 ABCC4O15439 1325 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 ALDH1L1O75891 902 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 MMP10P09238 476 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 ST5P78524 1137 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 CWF19L2Q2TBE0 894 aaKnown RBP10.67□□□□□ -0.7
TRIM48-201ENST00000417545 TMEM57Q8N5G2 664 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 CCDC191Q8NCU4 936 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 PANK1Q8TE04 598 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 TRMT112Q9UI30 125 aaKnown RBP10.67□□□□□ -0.7
TRIM48-201ENST00000417545 HDAC5Q9UQL6 1122 aa10.67□□□□□ -0.7
TRIM48-201ENST00000417545 COL24A1Q17RW2 1714 aa10.66□□□□□ -0.7
TRIM48-201ENST00000417545 NEURL1BA8MQ27 555 aa10.66□□□□□ -0.7
TRIM48-201ENST00000417545 HSP90B1P14625 803 aaKnown RBP10.66□□□□□ -0.7
TRIM48-201ENST00000417545 PDE3AQ14432 1141 aa10.66□□□□□ -0.7
TRIM48-201ENST00000417545 TPTE2Q6XPS3 522 aa10.66□□□□□ -0.7
TRIM48-201ENST00000417545 KLHL34Q8N239 644 aa10.66□□□□□ -0.7
TRIM48-201ENST00000417545 CNBD1Q8NA66 436 aa10.66□□□□□ -0.7
TRIM48-201ENST00000417545 UTP14AQ9BVJ6 771 aaKnown RBP10.66□□□□□ -0.7
TRIM48-201ENST00000417545 BCL2L12Q9HB09 334 aa10.66□□□□□ -0.7
TRIM48-201ENST00000417545 TNNQ9UQP3 1299 aa10.66□□□□□ -0.7
TRIM48-201ENST00000417545 ATF5Q9Y2D1 282 aaPredicted RBP10.66□□□□□ -0.7
TRIM48-201ENST00000417545 SERPINB2P05120 415 aa10.65□□□□□ -0.7
TRIM48-201ENST00000417545 NFIXQ14938 502 aa10.65□□□□□ -0.7
TRIM48-201ENST00000417545 RTL5Q5HYW3 569 aaPredicted RBP10.65□□□□□ -0.7
TRIM48-201ENST00000417545 BEND3Q5T5X7 828 aa10.65□□□□□ -0.7
TRIM48-201ENST00000417545 NLRP10Q86W26 655 aa10.65□□□□□ -0.7
TRIM48-201ENST00000417545 ZNF34Q8IZ26 560 aa10.65□□□□□ -0.7
TRIM48-201ENST00000417545 ISCA1Q9BUE6 129 aa10.65□□□□□ -0.7
TRIM48-201ENST00000417545 PDGFDQ9GZP0 370 aaPredicted RBP10.65□□□□□ -0.7
TRIM48-201ENST00000417545 DDX19BQ9UMR2 479 aa10.65□□□□□ -0.7
TRIM48-201ENST00000417545 COG6Q9Y2V7 657 aa10.65□□□□□ -0.7
TRIM48-201ENST00000417545 GNAI3P08754 354 aa10.64□□□□□ -0.71
TRIM48-201ENST00000417545 UBTFL1P0CB47 393 aaPredicted RBP10.64□□□□□ -0.71
TRIM48-201ENST00000417545 IRX6P78412 446 aaPredicted RBP10.64□□□□□ -0.71
TRIM48-201ENST00000417545 GCKRQ14397 625 aa10.64□□□□□ -0.71
TRIM48-201ENST00000417545 MVPQ14764 893 aaKnown RBP10.64□□□□□ -0.71
TRIM48-201ENST00000417545 INTS3Q68E01 1043 aaKnown RBP10.64□□□□□ -0.71
TRIM48-201ENST00000417545 UBE3BQ7Z3V4 1068 aa10.64□□□□□ -0.71
TRIM48-201ENST00000417545 SPON1Q9HCB6 807 aa10.64□□□□□ -0.71
TRIM48-201ENST00000417545 PPP1R1BQ9UD71 204 aaPredicted RBP10.64□□□□□ -0.71
TRIM48-201ENST00000417545 RNF123Q5XPI4 1314 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 UBN2Q6ZU65 1347 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 SH3TC1Q8TE82 1336 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 LAMB2P55268 1798 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 GRM8O00222 908 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 IGKV5-2P06315 115 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 TRIM28Q13263 835 aaKnown RBP10.63□□□□□ -0.71
TRIM48-201ENST00000417545 SUSD4Q5VX71 490 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 CHMP3Q9Y3E7 222 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 IBTKQ9P2D0 1353 aaPredicted RBP10.63□□□□□ -0.71
TRIM48-201ENST00000417545 MYH3P11055 1940 aa10.63□□□□□ -0.71
TRIM48-201ENST00000417545 POLRMTO00411 1230 aaKnown RBP10.62□□□□□ -0.71
TRIM48-201ENST00000417545 ZBTB22O15209 634 aa10.62□□□□□ -0.71
TRIM48-201ENST00000417545 PCCAP05165 728 aaPredicted RBP10.62□□□□□ -0.71
TRIM48-201ENST00000417545 RLBP1P12271 317 aa10.62□□□□□ -0.71
TRIM48-201ENST00000417545 TM4SF1P30408 202 aa10.62□□□□□ -0.71
TRIM48-201ENST00000417545 DDR1Q08345 913 aa10.62□□□□□ -0.71
TRIM48-201ENST00000417545 C20orf194Q5TEA3 1177 aa10.62□□□□□ -0.71
TRIM48-201ENST00000417545 NUTM1Q86Y26 1132 aa10.62□□□□□ -0.71
TRIM48-201ENST00000417545 ZBTB38Q8NAP3 1195 aaPredicted RBP10.62□□□□□ -0.71
TRIM48-201ENST00000417545 FAM89AQ96GI7 184 aa10.62□□□□□ -0.71
TRIM48-201ENST00000417545 IRS4O14654 1257 aaPredicted RBP10.61□□□□□ -0.71
TRIM48-201ENST00000417545 NTSR2O95665 410 aa10.61□□□□□ -0.71
TRIM48-201ENST00000417545 ERFEQ4G0M1 354 aa10.61□□□□□ -0.71
TRIM48-201ENST00000417545 JARID2Q92833 1246 aaPredicted RBP10.61□□□□□ -0.71
TRIM48-201ENST00000417545 CRBNQ96SW2 442 aa10.61□□□□□ -0.71
TRIM48-201ENST00000417545 GNAI2P04899 355 aa10.6□□□□□ -0.71
TRIM48-201ENST00000417545 PRR5LQ6MZQ0 368 aa10.6□□□□□ -0.71
TRIM48-201ENST00000417545 CCDC24Q8N4L8 307 aa10.6□□□□□ -0.71
TRIM48-201ENST00000417545 NLRP3Q96P20 1036 aa10.6□□□□□ -0.71
TRIM48-201ENST00000417545 MEIS3Q99687 375 aa10.6□□□□□ -0.71
TRIM48-201ENST00000417545 CDHR2Q9BYE9 1310 aa10.6□□□□□ -0.71
TRIM48-201ENST00000417545 DDX60Q8IY21 1712 aaKnown RBP10.59□□□□□ -0.71
TRIM48-201ENST00000417545 NRXN2Q9P2S2 1712 aa10.59□□□□□ -0.71
TRIM48-201ENST00000417545 PDE8AO60658 829 aa10.59□□□□□ -0.71
TRIM48-201ENST00000417545 NBPF7P0C2Y1 421 aaPredicted RBP10.59□□□□□ -0.71
TRIM48-201ENST00000417545 PDE6BP35913 854 aa10.59□□□□□ -0.71
TRIM48-201ENST00000417545 RPGRQ92834 1020 aaKnown RBP10.59□□□□□ -0.71
TRIM48-201ENST00000417545 ABCC12Q96J65 1359 aa10.59□□□□□ -0.71
TRIM48-201ENST00000417545 H7C1W4 665 aa10.58□□□□□ -0.72
TRIM48-201ENST00000417545 HCLS1P14317 486 aaPredicted RBP10.58□□□□□ -0.72
TRIM48-201ENST00000417545 TAF7LQ5H9L4 462 aa10.58□□□□□ -0.72
TRIM48-201ENST00000417545 USP44Q9H0E7 712 aa10.58□□□□□ -0.72
TRIM48-201ENST00000417545 LRRFIP2Q9Y608 721 aaKnown RBP10.58□□□□□ -0.72
TRIM48-201ENST00000417545 TNRC6CQ9HCJ0 1690 aaKnown RBP10.58□□□□□ -0.72
TRIM48-201ENST00000417545 CTSWP56202 376 aa10.58□□□□□ -0.72
TRIM48-201ENST00000417545 CCDC152Q4G0S7 254 aa10.58□□□□□ -0.72
TRIM48-201ENST00000417545 SUCLG2Q96I99 432 aa10.58□□□□□ -0.72
TRIM48-201ENST00000417545 CCDC85AQ96PX6 553 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms