RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 KAT14Q9H8E8 782 aa20.1■□□□□ 0.81
PHRF1-202ENST00000413872 BABAM1Q9NWV8 329 aa20.1■□□□□ 0.81
PHRF1-202ENST00000413872 MATR3P43243 847 aaKnown RBP eCLIP20.09■□□□□ 0.81
PHRF1-202ENST00000413872 ATP8B2P98198 1209 aa20.09■□□□□ 0.81
PHRF1-202ENST00000413872 DZIP3Q86Y13 1208 aaKnown RBP20.09■□□□□ 0.81
PHRF1-202ENST00000413872 BAG4O95429 457 aaKnown RBP20.09■□□□□ 0.81
PHRF1-202ENST00000413872 SIRT1Q96EB6 747 aa20.09■□□□□ 0.81
PHRF1-202ENST00000413872 EYA1Q99502 592 aa20.09■□□□□ 0.81
PHRF1-202ENST00000413872 IARSP41252 1262 aaKnown RBP20.09■□□□□ 0.81
PHRF1-202ENST00000413872 LMBR1LQ6UX01 489 aa20.08■□□□□ 0.81
PHRF1-202ENST00000413872 NEK1Q96PY6 1258 aa20.08■□□□□ 0.81
PHRF1-202ENST00000413872 CEP170Q5SW79 1584 aa20.08■□□□□ 0.81
PHRF1-202ENST00000413872 MEIS3Q99687 375 aa20.08■□□□□ 0.81
PHRF1-202ENST00000413872 PYM1Q9BRP8 204 aaKnown RBP20.08■□□□□ 0.81
PHRF1-202ENST00000413872 CTAGE5O15320 804 aa20.08■□□□□ 0.8
PHRF1-202ENST00000413872 FGFR1OPO95684 399 aaKnown RBP20.08■□□□□ 0.8
PHRF1-202ENST00000413872 TSG101Q99816 390 aa20.08■□□□□ 0.8
PHRF1-202ENST00000413872 TMTC2Q8N394 836 aa20.08■□□□□ 0.8
PHRF1-202ENST00000413872 SPC24Q8NBT2 197 aa20.08■□□□□ 0.8
PHRF1-202ENST00000413872 NFATC2IPQ8NCF5 419 aa20.08■□□□□ 0.8
PHRF1-202ENST00000413872 EIF5P55010 431 aaKnown RBP20.07■□□□□ 0.8
PHRF1-202ENST00000413872 KRT23Q9C075 422 aa20.07■□□□□ 0.8
PHRF1-202ENST00000413872 ANO10Q9NW15 660 aa20.07■□□□□ 0.8
PHRF1-202ENST00000413872 ZRANB1Q9UGI0 708 aa20.07■□□□□ 0.8
PHRF1-202ENST00000413872 EDC4Q6P2E9 1401 aaKnown RBP20.07■□□□□ 0.8
PHRF1-202ENST00000413872 POTEJP0CG39 1038 aa20.07■□□□□ 0.8
PHRF1-202ENST00000413872 TBC1D9Q6ZT07 1266 aa20.07■□□□□ 0.8
PHRF1-202ENST00000413872 C8orf58Q8NAV2 365 aa20.07■□□□□ 0.8
PHRF1-202ENST00000413872 MAP3K19Q56UN5 1328 aa20.07■□□□□ 0.8
PHRF1-202ENST00000413872 CNNM2Q9H8M5 875 aa20.06■□□□□ 0.8
PHRF1-202ENST00000413872 NUCB1Q02818 461 aa20.06■□□□□ 0.8
PHRF1-202ENST00000413872 ZNF804AQ7Z570 1209 aa20.06■□□□□ 0.8
PHRF1-202ENST00000413872 USP16Q9Y5T5 823 aa20.06■□□□□ 0.8
PHRF1-202ENST00000413872 MCM5P33992 734 aa20.06■□□□□ 0.8
PHRF1-202ENST00000413872 MTERF4Q7Z6M4 381 aaKnown RBP20.06■□□□□ 0.8
PHRF1-202ENST00000413872 ZNF397Q8NF99 534 aaPredicted RBP20.06■□□□□ 0.8
PHRF1-202ENST00000413872 ABCA5Q8WWZ7 1642 aa20.05■□□□□ 0.8
PHRF1-202ENST00000413872 NBPF14Q5TI25 921 aa20.05■□□□□ 0.8
PHRF1-202ENST00000413872 SBNO1A3KN83 1393 aa20.05■□□□□ 0.8
PHRF1-202ENST00000413872 CCDC181Q5TID7 509 aa20.05■□□□□ 0.8
PHRF1-202ENST00000413872 RNMTO43148 476 aaKnown RBP20.05■□□□□ 0.8
PHRF1-202ENST00000413872 OGFOD1Q8N543 542 aa20.05■□□□□ 0.8
PHRF1-202ENST00000413872 GRPEL1Q9HAV7 217 aa20.04■□□□□ 0.8
PHRF1-202ENST00000413872 MPHOSPH6Q99547 160 aaKnown RBP20.04■□□□□ 0.8
PHRF1-202ENST00000413872 NPC1L1Q9UHC9 1359 aa20.04■□□□□ 0.8
PHRF1-202ENST00000413872 ARHGEF10O15013 1369 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 METAP2P50579 478 aaKnown RBP eCLIP20.03■□□□□ 0.81e-7■□□□□ 11.3
PHRF1-202ENST00000413872 CCDC82Q8N4S0 544 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 CYP7A1P22680 504 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 ESR2Q92731 530 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 WDR78Q5VTH9 848 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 TCP11L1Q9NUJ3 509 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 POLD1P28340 1107 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 GNAQP50148 359 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 FKBP15Q5T1M5 1219 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 IQCEQ6IPM2 695 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 ANKRD2Q9GZV1 360 aa20.03■□□□□ 0.8
PHRF1-202ENST00000413872 CCDC183Q5T5S1 534 aa20.02■□□□□ 0.8
PHRF1-202ENST00000413872 PARP3Q9Y6F1 533 aa20.02■□□□□ 0.8
PHRF1-202ENST00000413872 PLCG2P16885 1265 aa20.02■□□□□ 0.8
PHRF1-202ENST00000413872 AMPD3Q01432 767 aa20.02■□□□□ 0.8
PHRF1-202ENST00000413872 SCLT1Q96NL6 688 aa20.02■□□□□ 0.8
PHRF1-202ENST00000413872 BTG4Q9NY30 223 aa20.02■□□□□ 0.8
PHRF1-202ENST00000413872 ORC3Q9UBD5 711 aaPredicted RBP20.02■□□□□ 0.8
PHRF1-202ENST00000413872 TTC41PQ6P2S7 1318 aa20.02■□□□□ 0.8
PHRF1-202ENST00000413872 HOXB7P09629 217 aa20.02■□□□□ 0.79
PHRF1-202ENST00000413872 CFAP100Q494V2 611 aa20.02■□□□□ 0.79
PHRF1-202ENST00000413872 NAA16Q6N069 864 aaPredicted RBP20.02■□□□□ 0.79
PHRF1-202ENST00000413872 JARID2Q92833 1246 aaPredicted RBP20.02■□□□□ 0.79
PHRF1-202ENST00000413872 PZPP20742 1482 aa20.02■□□□□ 0.79
PHRF1-202ENST00000413872 ZNF771Q7L3S4 317 aaPredicted RBP20.01■□□□□ 0.79
PHRF1-202ENST00000413872 EPB41L2O43491 1005 aaKnown RBP20.01■□□□□ 0.79
PHRF1-202ENST00000413872 PDE1AP54750 535 aa20.01■□□□□ 0.79
PHRF1-202ENST00000413872 CCT2P78371 535 aaKnown RBP20.01■□□□□ 0.79
PHRF1-202ENST00000413872 CALML4Q96GE6 196 aa20.01■□□□□ 0.79
PHRF1-202ENST00000413872 DDX21Q9NR30 783 aaKnown RBP eCLIP20.01■□□□□ 0.79
PHRF1-202ENST00000413872 DDX19AQ9NUU7 478 aaKnown RBP20.01■□□□□ 0.79
PHRF1-202ENST00000413872 GNAT2P19087 354 aa20.01■□□□□ 0.79
PHRF1-202ENST00000413872 EYA3Q99504 573 aa20.01■□□□□ 0.79
PHRF1-202ENST00000413872 CARD14Q9BXL6 1004 aa20.01■□□□□ 0.79
PHRF1-202ENST00000413872 TFCP2L1Q9NZI6 479 aa20.01■□□□□ 0.79
PHRF1-202ENST00000413872 WTAPQ15007 396 aa20■□□□□ 0.79
PHRF1-202ENST00000413872 SEPT11Q9NVA2 429 aaKnown RBP20■□□□□ 0.79
PHRF1-202ENST00000413872 VAMP4O75379 141 aa20■□□□□ 0.79
PHRF1-202ENST00000413872 ANAPC15P60006 121 aa20■□□□□ 0.79
PHRF1-202ENST00000413872 MCMDC2Q4G0Z9 681 aa20■□□□□ 0.79
PHRF1-202ENST00000413872 ZC3H12CQ9C0D7 883 aaKnown RBP20■□□□□ 0.79
PHRF1-202ENST00000413872 LRRC27Q9C0I9 530 aa20■□□□□ 0.79
PHRF1-202ENST00000413872 IRS4O14654 1257 aaPredicted RBP19.99■□□□□ 0.79
PHRF1-202ENST00000413872 BMP15O95972 392 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 NBPF7P0C2Y1 421 aaPredicted RBP19.99■□□□□ 0.79
PHRF1-202ENST00000413872 MICU3Q86XE3 530 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 COL17A1Q9UMD9 1497 aaPredicted RBP19.99■□□□□ 0.79
PHRF1-202ENST00000413872 CETN2P41208 172 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 HAND2P61296 217 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 MAP7D2Q96T17 732 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 STXBP4Q6ZWJ1 553 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 GUCY1B3Q02153 619 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 PARP10Q53GL7 1025 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 ZFYVE16Q7Z3T8 1539 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms