RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 CCDC8Q9H0W5 538 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-211ENST00000413186 PCDHB15Q9Y5E8 787 aa10.2□□□□□ -0.78
SYNE1-211ENST00000413186 SPATA31A5Q5VU36 1347 aa10.2□□□□□ -0.78
SYNE1-211ENST00000413186 SPATA31A7Q8IWB4 1347 aa10.2□□□□□ -0.78
SYNE1-211ENST00000413186 SMARCA5O60264 1052 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-211ENST00000413186 IDH1O75874 414 aaKnown RBP10.2□□□□□ -0.78
SYNE1-211ENST00000413186 DEKP35659 375 aaKnown RBP10.2□□□□□ -0.78
SYNE1-211ENST00000413186 ATP2B3Q16720 1220 aa10.2□□□□□ -0.78
SYNE1-211ENST00000413186 NOL8Q76FK4 1167 aaKnown RBP10.2□□□□□ -0.78
SYNE1-211ENST00000413186 SPRYD3Q8NCJ5 442 aa10.2□□□□□ -0.78
SYNE1-211ENST00000413186 DCTPP1Q9H773 170 aa10.2□□□□□ -0.78
SYNE1-211ENST00000413186 ABCF2Q9UG63 623 aa10.2□□□□□ -0.78
SYNE1-211ENST00000413186 PALLDQ8WX93 1383 aa10.2□□□□□ -0.78
SYNE1-211ENST00000413186 DDX11L8A8MPP1 907 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 CRKLP46109 303 aaKnown RBP10.19□□□□□ -0.78
SYNE1-211ENST00000413186 ANKRD2Q9GZV1 360 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 MAP3K15Q6ZN16 1313 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 CHAF1AQ13111 956 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-211ENST00000413186 ABCC4O15439 1325 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 CPLX1O14810 134 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 NEFHP12036 1026 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 FAM184AQ8NB25 1140 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 FAM89AQ96GI7 184 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 BOLA2Q9H3K6 86 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 ZNF142P52746 1687 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-211ENST00000413186 ANO8Q9HCE9 1232 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-211ENST00000413186 TMOD2Q9NZR1 351 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 TNNQ9UQP3 1299 aa10.19□□□□□ -0.78
SYNE1-211ENST00000413186 MCM2P49736 904 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 NUCB1Q02818 461 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 SPTY2D1Q68D10 685 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-211ENST00000413186 EVI5LQ96CN4 794 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 LDHCP07864 332 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 NFXL1Q6ZNB6 911 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 NLGN1Q8N2Q7 840 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 RBM17Q96I25 401 aaKnown RBP10.18□□□□□ -0.78
SYNE1-211ENST00000413186 NEURL1BA8MQ27 555 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 RNF123Q5XPI4 1314 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 GIGYF2Q6Y7W6 1299 aaKnown RBP10.18□□□□□ -0.78
SYNE1-211ENST00000413186 SYAP1Q96A49 352 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-211ENST00000413186 AIDAQ96BJ3 306 aa10.18□□□□□ -0.78
SYNE1-211ENST00000413186 BICC1Q9H694 974 aaKnown RBP10.18□□□□□ -0.78
SYNE1-211ENST00000413186 CSPP1Q1MSJ5 1256 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 SKOR2Q2VWA4 1001 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-211ENST00000413186 SLKQ9H2G2 1235 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-211ENST00000413186 KIF20BQ96Q89 1820 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 ERVV-1B6SEH8 477 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 KRT32Q14532 448 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 RABEP1Q15276 862 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 BMP2KLQ5H9B9 411 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 ZBTB1Q9Y2K1 713 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 ATP6V1DQ9Y5K8 247 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 DZIP1Q86YF9 867 aaKnown RBP10.17□□□□□ -0.78
SYNE1-211ENST00000413186 SMC5Q8IY18 1101 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 MAP4K4O95819 1239 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-211ENST00000413186 IGHDP01880 384 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 RBM5P52756 815 aaKnown RBP eCLIP10.17□□□□□ -0.78
SYNE1-211ENST00000413186 TTLL7Q6ZT98 887 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 ZGPATQ8N5A5 531 aaKnown RBP10.17□□□□□ -0.78
SYNE1-211ENST00000413186 NOC3LQ8WTT2 800 aaKnown RBP10.17□□□□□ -0.78
SYNE1-211ENST00000413186 FBXO3Q9UK99 471 aa10.17□□□□□ -0.78
SYNE1-211ENST00000413186 EYA2O00167 538 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 PCCAP05165 728 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-211ENST00000413186 ATG3Q9NT62 314 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 EYA3Q99504 573 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-211ENST00000413186 FAM182BQ5T319 152 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 CWC27Q6UX04 472 aaKnown RBP10.16□□□□□ -0.78
SYNE1-211ENST00000413186 CCDC34Q96HJ3 373 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 CHMP5Q9NZZ3 219 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 TTC41PQ6P2S7 1318 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 H3BQV1 296 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 ZFYP08048 801 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-211ENST00000413186 SLC27A3Q5K4L6 730 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 BEND3Q5T5X7 828 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 IFFO2Q5TF58 517 aa10.16□□□□□ -0.78
SYNE1-211ENST00000413186 CTDP1Q9Y5B0 961 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-211ENST00000413186 PATL2C9JE40 543 aaKnown RBP10.15□□□□□ -0.78
SYNE1-211ENST00000413186 TDO2P48775 406 aa10.15□□□□□ -0.78
SYNE1-211ENST00000413186 ZBTB38Q8NAP3 1195 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-211ENST00000413186 ZNF287Q9HBT7 754 aa10.15□□□□□ -0.78
SYNE1-211ENST00000413186 TRIM29Q14134 588 aa10.15□□□□□ -0.78
SYNE1-211ENST00000413186 HCLS1P14317 486 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-211ENST00000413186 NKX1-1Q15270 411 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-211ENST00000413186 ZNF804AQ7Z570 1209 aa10.15□□□□□ -0.78
SYNE1-211ENST00000413186 ZC3H12CQ9C0D7 883 aaKnown RBP10.15□□□□□ -0.78
SYNE1-211ENST00000413186 PLEKHG2Q9H7P9 1386 aa10.15□□□□□ -0.79
SYNE1-211ENST00000413186 ITGA6P23229 1130 aa10.15□□□□□ -0.79
SYNE1-211ENST00000413186 ANKRD1Q15327 319 aa10.15□□□□□ -0.79
SYNE1-211ENST00000413186 XRN1Q8IZH2 1706 aaKnown RBP10.15□□□□□ -0.79
SYNE1-211ENST00000413186 FMN2Q9NZ56 1722 aa10.15□□□□□ -0.79
SYNE1-211ENST00000413186 NRXN3Q9Y4C0 1643 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 GOLGA6L6A8MZA4 724 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 RPS6KA4O75676 772 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 NBPF7P0C2Y1 421 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-211ENST00000413186 ADRA2BP18089 450 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 USP44Q9H0E7 712 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 ZNF219Q9P2Y4 722 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-211ENST00000413186 PA2G4Q9UQ80 394 aaKnown RBP10.14□□□□□ -0.79
SYNE1-211ENST00000413186 CLEC4GQ6UXB4 293 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms