RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 C3orf67Q6ZVT6 689 aa25.1■■□□□ 1.61
SMARCB1-204ENST00000407422 PPP1R42Q7Z4L9 355 aa25.1■■□□□ 1.61
SMARCB1-204ENST00000407422 RIC1Q4ADV7 1423 aa25.1■■□□□ 1.61
SMARCB1-204ENST00000407422 RBM46Q8TBY0 533 aaKnown RBP25.09■■□□□ 1.61
SMARCB1-204ENST00000407422 IFT57Q9NWB7 429 aa25.09■■□□□ 1.61
SMARCB1-204ENST00000407422 RPGRQ92834 1020 aaKnown RBP25.08■■□□□ 1.6
SMARCB1-204ENST00000407422 UTP14AQ9BVJ6 771 aaKnown RBP25.08■■□□□ 1.6
SMARCB1-204ENST00000407422 HOXA10P31260 410 aaPredicted RBP25.07■■□□□ 1.6
SMARCB1-204ENST00000407422 GNAI1P63096 354 aa25.07■■□□□ 1.6
SMARCB1-204ENST00000407422 DBF4Q9UBU7 674 aaPredicted RBP25.07■■□□□ 1.6
SMARCB1-204ENST00000407422 CALD1Q05682 793 aaKnown RBP25.06■■□□□ 1.6
SMARCB1-204ENST00000407422 TCIRG1Q13488 830 aa25.06■■□□□ 1.6
SMARCB1-204ENST00000407422 NLRP10Q86W26 655 aa25.06■■□□□ 1.6
SMARCB1-204ENST00000407422 ZNF277Q9NRM2 450 aaPredicted RBP25.06■■□□□ 1.6
SMARCB1-204ENST00000407422 ELL2O00472 640 aaPredicted RBP25.05■■□□□ 1.6
SMARCB1-204ENST00000407422 VEGFAP15692 232 aaPredicted RBP25.05■■□□□ 1.6
SMARCB1-204ENST00000407422 FKBP4Q02790 459 aaKnown RBP eCLIP25.05■■□□□ 1.6
SMARCB1-204ENST00000407422 HSP90AB3PQ58FF7 597 aa25.05■■□□□ 1.6
SMARCB1-204ENST00000407422 DPY19L2Q6NUT2 758 aa25.05■■□□□ 1.6
SMARCB1-204ENST00000407422 SLC51AQ86UW1 340 aa25.05■■□□□ 1.6
SMARCB1-204ENST00000407422 ZNF428Q96B54 188 aa25.05■■□□□ 1.6
SMARCB1-204ENST00000407422 POTECB2RU33 542 aa25.04■■□□□ 1.6
SMARCB1-204ENST00000407422 RTKN2Q8IZC4 609 aa25.04■■□□□ 1.6
SMARCB1-204ENST00000407422 SYNE4Q8N205 404 aa25.04■■□□□ 1.6
SMARCB1-204ENST00000407422 WDR90Q96KV7 1748 aa25.04■■□□□ 1.6
SMARCB1-204ENST00000407422 SLC10A5Q5PT55 438 aa25.04■■□□□ 1.6
SMARCB1-204ENST00000407422 LAMB2P55268 1798 aa25.04■■□□□ 1.6
SMARCB1-204ENST00000407422 SNED1Q8TER0 1413 aa25.03■■□□□ 1.6
SMARCB1-204ENST00000407422 PLBD2Q8NHP8 589 aa25.03■■□□□ 1.6
SMARCB1-204ENST00000407422 RBM17Q96I25 401 aaKnown RBP25.03■■□□□ 1.6
SMARCB1-204ENST00000407422 NLRP3Q96P20 1036 aa25.03■■□□□ 1.6
SMARCB1-204ENST00000407422 MRS2Q9HD23 443 aa25.03■■□□□ 1.6
SMARCB1-204ENST00000407422 ANP32CO43423 234 aa25.02■■□□□ 1.6
SMARCB1-204ENST00000407422 ANKRD13DQ6ZTN6 518 aa25.02■■□□□ 1.6
SMARCB1-204ENST00000407422 C8orf58Q8NAV2 365 aa25.02■■□□□ 1.6
SMARCB1-204ENST00000407422 CRAMP1Q96RY5 1269 aa25.02■■□□□ 1.6
SMARCB1-204ENST00000407422 HYPKQ9NX55 129 aa25.02■■□□□ 1.6
SMARCB1-204ENST00000407422 DDNO94850 711 aaPredicted RBP25.01■■□□□ 1.59
SMARCB1-204ENST00000407422 TRMT112Q9UI30 125 aaKnown RBP25.01■■□□□ 1.59
SMARCB1-204ENST00000407422 TCERG1O14776 1098 aaKnown RBP25.01■■□□□ 1.59
SMARCB1-204ENST00000407422 HCLS1P14317 486 aaPredicted RBP25.01■■□□□ 1.59
SMARCB1-204ENST00000407422 FSTL1Q12841 308 aa25.01■■□□□ 1.59
SMARCB1-204ENST00000407422 RNF123Q5XPI4 1314 aa25■■□□□ 1.59
SMARCB1-204ENST00000407422 APLP1P51693 650 aa25■■□□□ 1.59
SMARCB1-204ENST00000407422 ATP5J2-PTCD1G3V325 749 aa24.98■■□□□ 1.59
SMARCB1-204ENST00000407422 PPEF1O14829 653 aaPredicted RBP24.98■■□□□ 1.59
SMARCB1-204ENST00000407422 PHAXQ9H814 394 aaKnown RBP24.98■■□□□ 1.59
SMARCB1-204ENST00000407422 SH3TC1Q8TE82 1336 aa24.98■■□□□ 1.59
SMARCB1-204ENST00000407422 TAF1P21675 1872 aa24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 IARSP41252 1262 aaKnown RBP24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 CC2D2BQ6DHV5 1058 aa24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 WWC1Q8IX03 1113 aa24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 SMC1BQ8NDV3 1235 aa24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 TSR2Q969E8 191 aaKnown RBP24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 PSMD1Q99460 953 aa24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 ISCA1Q9BUE6 129 aa24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 CCDC27Q2M243 656 aa24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 TSPYL6Q8N831 410 aa24.97■■□□□ 1.59
SMARCB1-204ENST00000407422 ABCC4O15439 1325 aa24.96■■□□□ 1.59
SMARCB1-204ENST00000407422 ZNF541Q9H0D2 1346 aa24.96■■□□□ 1.59
SMARCB1-204ENST00000407422 DDX60Q8IY21 1712 aaKnown RBP24.96■■□□□ 1.59
SMARCB1-204ENST00000407422 HTRA3P83110 453 aa24.95■■□□□ 1.58
SMARCB1-204ENST00000407422 PCNTO95613 3336 aa24.95■■□□□ 1.58
SMARCB1-204ENST00000407422 COL4A5P29400 1685 aa24.95■■□□□ 1.58
SMARCB1-204ENST00000407422 FAM89AQ96GI7 184 aa24.94■■□□□ 1.58
SMARCB1-204ENST00000407422 RIC3Q7Z5B4 369 aa24.93■■□□□ 1.58
SMARCB1-204ENST00000407422 ATP6V0A2Q9Y487 856 aa24.93■■□□□ 1.58
SMARCB1-204ENST00000407422 FZD9O00144 591 aa24.92■■□□□ 1.58
SMARCB1-204ENST00000407422 GOLGA2Q08379 1002 aa24.92■■□□□ 1.58
SMARCB1-204ENST00000407422 RTL5Q5HYW3 569 aaPredicted RBP24.92■■□□□ 1.58
SMARCB1-204ENST00000407422 DNAJC5GQ8N7S2 189 aa24.92■■□□□ 1.58
SMARCB1-204ENST00000407422 SCN4AP35499 1836 aa24.91■■□□□ 1.58
SMARCB1-204ENST00000407422 GRIPAP1Q4V328 841 aa24.91■■□□□ 1.58
SMARCB1-204ENST00000407422 CCDC30Q5VVM6 783 aa24.91■■□□□ 1.58
SMARCB1-204ENST00000407422 POTEIP0CG38 1075 aa24.9■■□□□ 1.58
SMARCB1-204ENST00000407422 POTEJP0CG39 1038 aa24.9■■□□□ 1.58
SMARCB1-204ENST00000407422 TRIM28Q13263 835 aaKnown RBP24.9■■□□□ 1.58
SMARCB1-204ENST00000407422 L3MBTL3Q96JM7 780 aaPredicted RBP24.9■■□□□ 1.58
SMARCB1-204ENST00000407422 SALL2Q9Y467 1007 aaPredicted RBP24.9■■□□□ 1.58
SMARCB1-204ENST00000407422 DDX46Q7L014 1031 aaKnown RBP24.9■■□□□ 1.58
SMARCB1-204ENST00000407422 JDP2Q8WYK2 163 aa24.9■■□□□ 1.58
SMARCB1-204ENST00000407422 BBOX1O75936 387 aa24.89■■□□□ 1.57
SMARCB1-204ENST00000407422 LARGE2Q8N3Y3 721 aa24.88■■□□□ 1.57
SMARCB1-204ENST00000407422 MYD88Q99836 296 aa24.88■■□□□ 1.57
SMARCB1-204ENST00000407422 TMX4Q9H1E5 349 aaPredicted RBP24.88■■□□□ 1.57
SMARCB1-204ENST00000407422 GRAPQ13588 217 aa24.87■■□□□ 1.57
SMARCB1-204ENST00000407422 GRAPLQ8TC17 118 aaPredicted RBP24.87■■□□□ 1.57
SMARCB1-204ENST00000407422 IL16Q14005 1332 aa24.87■■□□□ 1.57
SMARCB1-204ENST00000407422 IQCA1LA6NCM1 817 aa24.86■■□□□ 1.57
SMARCB1-204ENST00000407422 NCBP3Q53F19 620 aaKnown RBP24.86■■□□□ 1.57
SMARCB1-204ENST00000407422 SP8Q8IXZ3 490 aa24.86■■□□□ 1.57
SMARCB1-204ENST00000407422 TAF1DQ9H5J8 278 aaPredicted RBP24.86■■□□□ 1.57
SMARCB1-204ENST00000407422 COL4A1P02462 1669 aa24.86■■□□□ 1.57
SMARCB1-204ENST00000407422 IRS4O14654 1257 aaPredicted RBP24.85■■□□□ 1.57
SMARCB1-204ENST00000407422 SF3B3Q15393 1217 aaKnown RBP24.85■■□□□ 1.57
SMARCB1-204ENST00000407422 AOC3Q16853 763 aa24.85■■□□□ 1.57
SMARCB1-204ENST00000407422 TWISTNBQ3B726 338 aaPredicted RBP24.85■■□□□ 1.57
SMARCB1-204ENST00000407422 GPC2Q8N158 579 aa24.85■■□□□ 1.57
SMARCB1-204ENST00000407422 CHMP4AQ9BY43 222 aa24.85■■□□□ 1.57
SMARCB1-204ENST00000407422 PPIP5K2O43314 1243 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms