RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 NPHP3Q7Z494 1330 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 NMIQ13287 307 aaPredicted RBP11.87□□□□□ -0.51
MSH2-202ENST00000406134 HSP90AB4PQ58FF6 505 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 VPS53Q5VIR6 699 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 PRPF40BQ6NWY9 871 aaKnown RBP11.87□□□□□ -0.51
MSH2-202ENST00000406134 ZNF790Q6PG37 636 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 ZNF589Q86UQ0 364 aaPredicted RBP11.87□□□□□ -0.51
MSH2-202ENST00000406134 TPCN1Q9ULQ1 816 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 OFD1O75665 1012 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 F13A1P00488 732 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 CASP7P55210 303 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 GLIPR1L2Q4G1C9 344 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 SLC52A2Q9HAB3 445 aa11.87□□□□□ -0.51
MSH2-202ENST00000406134 STX6O43752 255 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 PHKG2P15735 406 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 AACSQ86V21 672 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 NAP1L5Q96NT1 182 aaPredicted RBP11.86□□□□□ -0.51
MSH2-202ENST00000406134 C1orf141Q5JVX7 400 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 DDX54Q8TDD1 881 aaKnown RBP11.86□□□□□ -0.51
MSH2-202ENST00000406134 EVI5LQ96CN4 794 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 MYH7P12883 1935 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 ZNF609O15014 1411 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 AP5Z1O43299 807 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 CREB3L3Q68CJ9 461 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 VSIG10Q8N0Z9 540 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 CLASRPQ8N2M8 674 aaKnown RBP11.86□□□□□ -0.51
MSH2-202ENST00000406134 DDX17Q92841 729 aaKnown RBP11.86□□□□□ -0.51
MSH2-202ENST00000406134 C9orf78Q9NZ63 289 aaPredicted RBP11.86□□□□□ -0.51
MSH2-202ENST00000406134 ECM29Q5VYK3 1845 aa11.86□□□□□ -0.51
MSH2-202ENST00000406134 MYO5AQ9Y4I1 1855 aaKnown RBP11.85□□□□□ -0.51
MSH2-202ENST00000406134 TOB2Q14106 344 aaPredicted RBP11.85□□□□□ -0.51
MSH2-202ENST00000406134 KRT28Q7Z3Y7 464 aa11.85□□□□□ -0.51
MSH2-202ENST00000406134 RNF214Q8ND24 703 aa11.85□□□□□ -0.51
MSH2-202ENST00000406134 EDC3Q96F86 508 aaKnown RBP11.85□□□□□ -0.51
MSH2-202ENST00000406134 CCDC8Q9H0W5 538 aaPredicted RBP11.85□□□□□ -0.51
MSH2-202ENST00000406134 RBM8AQ9Y5S9 174 aaKnown RBP11.85□□□□□ -0.51
MSH2-202ENST00000406134 SLC27A2O14975 620 aa11.85□□□□□ -0.51
MSH2-202ENST00000406134 GCKRQ14397 625 aa11.85□□□□□ -0.51
MSH2-202ENST00000406134 CCDC83Q8IWF9 413 aa11.85□□□□□ -0.51
MSH2-202ENST00000406134 GJB2P29033 226 aa11.85□□□□□ -0.51
MSH2-202ENST00000406134 JAKMIP1Q96N16 626 aaKnown RBP11.85□□□□□ -0.51
MSH2-202ENST00000406134 ZNF496Q96IT1 587 aaPredicted RBP11.84□□□□□ -0.51
MSH2-202ENST00000406134 ZKSCAN5Q9Y2L8 839 aa11.84□□□□□ -0.51
MSH2-202ENST00000406134 SPEF2Q9C093 1822 aa11.84□□□□□ -0.51
MSH2-202ENST00000406134 CYP27B1O15528 508 aa11.84□□□□□ -0.51
MSH2-202ENST00000406134 PIP4K2AP48426 406 aaPredicted RBP11.84□□□□□ -0.51
MSH2-202ENST00000406134 USP16Q9Y5T5 823 aa11.84□□□□□ -0.51
MSH2-202ENST00000406134 PTPN12Q05209 780 aaKnown RBP11.84□□□□□ -0.51
MSH2-202ENST00000406134 AIMP1Q12904 312 aaKnown RBP11.84□□□□□ -0.51
MSH2-202ENST00000406134 RABL6Q3YEC7 729 aaPredicted RBP11.84□□□□□ -0.51
MSH2-202ENST00000406134 ERC1Q8IUD2 1116 aa11.84□□□□□ -0.51
MSH2-202ENST00000406134 NFATC2IPQ8NCF5 419 aa11.84□□□□□ -0.51
MSH2-202ENST00000406134 TSPY26PQ9H489 355 aa11.84□□□□□ -0.51
MSH2-202ENST00000406134 DBNLQ9UJU6 430 aaKnown RBP11.84□□□□□ -0.51
MSH2-202ENST00000406134 TMEM94Q12767 1356 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 PLEKHG2Q9H7P9 1386 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 USPL1Q5W0Q7 1092 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 NECAB1Q8N987 351 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 XAGE3Q8WTP9 111 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 METTL22Q9BUU2 404 aaPredicted RBP11.83□□□□□ -0.52
MSH2-202ENST00000406134 DIAPH3Q9NSV4 1193 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 PDRG1Q9NUG6 133 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 ALDH8A1Q9H2A2 487 aaPredicted RBP11.83□□□□□ -0.52
MSH2-202ENST00000406134 DNM1Q05193 864 aaKnown RBP11.83□□□□□ -0.52
MSH2-202ENST00000406134 JARID2Q92833 1246 aaPredicted RBP11.83□□□□□ -0.52
MSH2-202ENST00000406134 SIL1Q9H173 461 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 NDUFB9Q9Y6M9 179 aa11.83□□□□□ -0.52
MSH2-202ENST00000406134 IFIT2P09913 472 aaKnown RBP11.82□□□□□ -0.52
MSH2-202ENST00000406134 ZC3H6P61129 1189 aaKnown RBP11.82□□□□□ -0.52
MSH2-202ENST00000406134 TSGA10IPQ3SY00 556 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 ZMYND15Q9H091 742 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 AKAP11Q9UKA4 1901 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 C4AP0C0L4 1744 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 C4BP0C0L5 1744 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 MYL6BP14649 208 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 OS9Q13438 667 aaPredicted RBP11.82□□□□□ -0.52
MSH2-202ENST00000406134 KIAA1211Q6ZU35 1233 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 CDC37L1Q7L3B6 337 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 COPS6Q7L5N1 327 aa11.82□□□□□ -0.52
MSH2-202ENST00000406134 TAF5LO75529 589 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 UBE2HP62256 183 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 BOLA2Q9H3K6 86 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 COPRSQ9NQ92 184 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 NHSL1Q5SYE7 1610 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 ITGB4P16144 1822 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 CCDC183Q5T5S1 534 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 TCEANC2Q96MN5 208 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.81□□□□□ -0.52
MSH2-202ENST00000406134 DCCP43146 1447 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 TNS3Q68CZ2 1445 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 MYD88Q99836 296 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 CHMP4AQ9BY43 222 aa11.81□□□□□ -0.52
MSH2-202ENST00000406134 A0A0U1RQG5 324 aaPredicted RBP11.8□□□□□ -0.52
MSH2-202ENST00000406134 ANKRD36CQ5JPF3 1778 aa11.8□□□□□ -0.52
MSH2-202ENST00000406134 SMC3Q9UQE7 1217 aa11.8□□□□□ -0.52
MSH2-202ENST00000406134 CYP46A1Q9Y6A2 500 aa11.8□□□□□ -0.52
MSH2-202ENST00000406134 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.8□□□□□ -0.52
MSH2-202ENST00000406134 RPS6KB1P23443 525 aa11.8□□□□□ -0.52
MSH2-202ENST00000406134 TTC6Q86TZ1 520 aa11.8□□□□□ -0.52
MSH2-202ENST00000406134 RUFY2Q8WXA3 655 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms