RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 SFSWAPQ12872 951 aaKnown RBP8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 LBRQ14739 615 aaKnown RBP8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 GRIN2CQ14957 1233 aa8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 SAMD5Q5TGI4 173 aa8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 TMC7Q7Z402 723 aa8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 CMTR1Q8N1G2 835 aaKnown RBP8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 VWA5B2Q8N398 1253 aa8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 FOXD4L4Q8WXT5 416 aaPredicted RBP8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 GGNBP2Q9H3C7 697 aa8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 PCDHGC4Q9Y5F7 938 aa8.64□□□□□ -1.03
HMGB3P19-201ENST00000403971 ANKRD33BA6NCL7 494 aa8.63□□□□□ -1.03
HMGB3P19-201ENST00000403971 GPR25O00155 361 aa8.63□□□□□ -1.03
HMGB3P19-201ENST00000403971 FIGNL1Q6PIW4 674 aa8.63□□□□□ -1.03
HMGB3P19-201ENST00000403971 TMC1Q8TDI8 760 aa8.63□□□□□ -1.03
HMGB3P19-201ENST00000403971 ABHD17AQ96GS6 310 aa8.63□□□□□ -1.03
HMGB3P19-201ENST00000403971 RBCK1Q9BYM8 510 aa8.63□□□□□ -1.03
HMGB3P19-201ENST00000403971 STRN4Q9NRL3 753 aa8.63□□□□□ -1.03
HMGB3P19-201ENST00000403971 EFSO43281 561 aa8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 FAM157BP0CG42 384 aa8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 TNP2Q05952 138 aa8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 TRIP4Q15650 581 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 C8orf34Q49A92 452 aa8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 PIK3R5Q8WYR1 880 aa8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 ASB16Q96NS5 453 aa8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 NDFIP2Q9NV92 336 aa8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 KCNMB2Q9Y691 235 aa8.62□□□□□ -1.03
HMGB3P19-201ENST00000403971 GPR182O15218 404 aa8.61□□□□□ -1.03
HMGB3P19-201ENST00000403971 IGHA2P01877 340 aa8.61□□□□□ -1.03
HMGB3P19-201ENST00000403971 MAPTP10636 758 aaKnown RBP8.61□□□□□ -1.03
HMGB3P19-201ENST00000403971 ZNF787Q6DD87 383 aa8.61□□□□□ -1.03
HMGB3P19-201ENST00000403971 GJD3Q8N144 294 aa8.61□□□□□ -1.03
HMGB3P19-201ENST00000403971 FAM13BQ9NYF5 915 aa8.61□□□□□ -1.03
HMGB3P19-201ENST00000403971 NPAS4Q8IUM7 802 aa8.6□□□□□ -1.03
HMGB3P19-201ENST00000403971 ZSCAN29Q8IWY8 852 aaPredicted RBP8.6□□□□□ -1.03
HMGB3P19-201ENST00000403971 FAM129BQ96TA1 746 aa8.6□□□□□ -1.03
HMGB3P19-201ENST00000403971 KCNH4Q9UQ05 1017 aa8.6□□□□□ -1.03
HMGB3P19-201ENST00000403971 EPB42P16452 691 aa8.59□□□□□ -1.03
HMGB3P19-201ENST00000403971 CD33P20138 364 aa8.59□□□□□ -1.03
HMGB3P19-201ENST00000403971 GMCL1Q96IK5 515 aa8.59□□□□□ -1.03
HMGB3P19-201ENST00000403971 CITED4Q96RK1 184 aa8.59□□□□□ -1.03
HMGB3P19-201ENST00000403971 NXF1Q9UBU9 619 aaKnown RBP8.59□□□□□ -1.03
HMGB3P19-201ENST00000403971 UBAP1LF5GYI3 381 aa8.58□□□□□ -1.04
HMGB3P19-201ENST00000403971 XYLBO75191 536 aa8.58□□□□□ -1.04
HMGB3P19-201ENST00000403971 PCSK2P16519 638 aa8.58□□□□□ -1.04
HMGB3P19-201ENST00000403971 USP5P45974 858 aa8.58□□□□□ -1.04
HMGB3P19-201ENST00000403971 SV2AQ7L0J3 742 aa8.58□□□□□ -1.04
HMGB3P19-201ENST00000403971 NIF3L1Q9GZT8 377 aa8.58□□□□□ -1.04
HMGB3P19-201ENST00000403971 KCNQ4P56696 695 aa8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 PDE3BQ13370 1112 aa8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 KRT25Q7Z3Z0 450 aa8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 RAB44Q7Z6P3 723 aaPredicted RBP8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 GPR161Q8N6U8 529 aaKnown RBP8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 NANOS1Q8WY41 292 aaKnown RBP8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 SLC30A3Q99726 388 aa8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 MARK1Q9P0L2 795 aa8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 ATXN7L1Q9ULK2 861 aaPredicted RBP8.57□□□□□ -1.04
HMGB3P19-201ENST00000403971 TREHO43280 583 aa8.56□□□□□ -1.04
HMGB3P19-201ENST00000403971 FGFR3P22607 806 aa8.56□□□□□ -1.04
HMGB3P19-201ENST00000403971 CTBSQ01459 385 aa8.56□□□□□ -1.04
HMGB3P19-201ENST00000403971 TTC16Q8NEE8 873 aa8.56□□□□□ -1.04
HMGB3P19-201ENST00000403971 DMRTB1Q96MA1 342 aa8.56□□□□□ -1.04
HMGB3P19-201ENST00000403971 H3BM21 787 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 SASH3O75995 380 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 P4HBP07237 508 aaKnown RBP8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 TARSP26639 723 aaKnown RBP8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 TAGLNQ01995 201 aaKnown RBP8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 ORC1Q13415 861 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 DSC3Q14574 896 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 FOXR1Q6PIV2 292 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 ZNF438Q7Z4V0 828 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 ZNF428Q96B54 188 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 TRERF1Q96PN7 1200 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 GSX2Q9BZM3 304 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 TMEM63CQ9P1W3 806 aa8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 FNDC3AQ9Y2H6 1198 aaKnown RBP8.55□□□□□ -1.04
HMGB3P19-201ENST00000403971 EGFRP00533 1210 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 RPLP1P05386 114 aaKnown RBP8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 ERCC3P19447 782 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 EHHADHQ08426 723 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 SPEM2Q0P670 501 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 LAMC2Q13753 1193 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 CCINQ13939 588 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 CFHR5Q9BXR6 569 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 ELP3Q9H9T3 547 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 FOXD3Q9UJU5 478 aaPredicted RBP8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 PHF24Q9UPV7 400 aa8.54□□□□□ -1.04
HMGB3P19-201ENST00000403971 C2CD2LO14523 706 aa8.53□□□□□ -1.04
HMGB3P19-201ENST00000403971 MAPK8P45983 427 aa8.53□□□□□ -1.04
HMGB3P19-201ENST00000403971 PLCB3Q01970 1234 aa8.53□□□□□ -1.04
HMGB3P19-201ENST00000403971 FMR1Q06787 632 aaKnown RBP eCLIP8.53□□□□□ -1.04
HMGB3P19-201ENST00000403971 GAS6Q14393 721 aa8.53□□□□□ -1.04
HMGB3P19-201ENST00000403971 ZFATQ9P243 1243 aa8.53□□□□□ -1.04
HMGB3P19-201ENST00000403971 TNFRSF21O75509 655 aa8.52□□□□□ -1.05
HMGB3P19-201ENST00000403971 NFKB1P19838 968 aa8.52□□□□□ -1.05
HMGB3P19-201ENST00000403971 PDE12Q6L8Q7 609 aaKnown RBP8.52□□□□□ -1.05
HMGB3P19-201ENST00000403971 XKR5Q6UX68 686 aa8.52□□□□□ -1.05
HMGB3P19-201ENST00000403971 BHMTQ93088 406 aa8.52□□□□□ -1.05
HMGB3P19-201ENST00000403971 ALKBH8Q96BT7 664 aaKnown RBP8.52□□□□□ -1.05
HMGB3P19-201ENST00000403971 SETDB2Q96T68 719 aa8.52□□□□□ -1.05
HMGB3P19-201ENST00000403971 BCL2L13Q9BXK5 485 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms