RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CALD1Q05682 793 aaKnown RBP17.46■□□□□ 0.39
VCX3A-202ENST00000398729 KRT24Q2M2I5 525 aa17.46■□□□□ 0.39
VCX3A-202ENST00000398729 PROSER3Q2NL68 480 aa17.46■□□□□ 0.39
VCX3A-202ENST00000398729 SOGA3Q5TF21 947 aa17.46■□□□□ 0.39
VCX3A-202ENST00000398729 L3MBTL3Q96JM7 780 aaPredicted RBP17.46■□□□□ 0.39
VCX3A-202ENST00000398729 TAF1DQ9H5J8 278 aaPredicted RBP17.46■□□□□ 0.39
VCX3A-202ENST00000398729 CNTNAP1P78357 1384 aa17.45■□□□□ 0.38
VCX3A-202ENST00000398729 IBTKQ9P2D0 1353 aaPredicted RBP17.45■□□□□ 0.38
VCX3A-202ENST00000398729 ANXA1P04083 346 aa17.45■□□□□ 0.38
VCX3A-202ENST00000398729 HOXB7P09629 217 aa17.45■□□□□ 0.38
VCX3A-202ENST00000398729 VEGFBP49765 207 aa17.45■□□□□ 0.38
VCX3A-202ENST00000398729 ZNF34Q8IZ26 560 aa17.45■□□□□ 0.38
VCX3A-202ENST00000398729 UBN2Q6ZU65 1347 aa17.45■□□□□ 0.38
VCX3A-202ENST00000398729 ANP32CO43423 234 aa17.44■□□□□ 0.38
VCX3A-202ENST00000398729 OLFM4Q6UX06 510 aa17.44■□□□□ 0.38
VCX3A-202ENST00000398729 COPS6Q7L5N1 327 aa17.44■□□□□ 0.38
VCX3A-202ENST00000398729 LDHDQ86WU2 507 aa17.44■□□□□ 0.38
VCX3A-202ENST00000398729 NUTM1Q86Y26 1132 aa17.44■□□□□ 0.38
VCX3A-202ENST00000398729 DDX21Q9NR30 783 aaKnown RBP eCLIP17.44■□□□□ 0.38
VCX3A-202ENST00000398729 ALDH1B1P30837 517 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 AIMP1Q12904 312 aaKnown RBP17.43■□□□□ 0.38
VCX3A-202ENST00000398729 CCDC184Q52MB2 194 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 PARP10Q53GL7 1025 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 HDGFL1Q5TGJ6 251 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 SUSD4Q5VX71 490 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 PPP1R42Q7Z4L9 355 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 XAGE3Q8WTP9 111 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 PRDM10Q9NQV6 1147 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 MBIPQ9NS73 344 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 IFT57Q9NWB7 429 aa17.43■□□□□ 0.38
VCX3A-202ENST00000398729 ABCC12Q96J65 1359 aa17.42■□□□□ 0.38
VCX3A-202ENST00000398729 IQCA1LA6NCM1 817 aa17.42■□□□□ 0.38
VCX3A-202ENST00000398729 GNAI1P63096 354 aa17.42■□□□□ 0.38
VCX3A-202ENST00000398729 HSP90AB3PQ58FF7 597 aa17.42■□□□□ 0.38
VCX3A-202ENST00000398729 ZNF277Q9NRM2 450 aaPredicted RBP17.42■□□□□ 0.38
VCX3A-202ENST00000398729 CHPF2Q9P2E5 772 aa17.42■□□□□ 0.38
VCX3A-202ENST00000398729 RIC1Q4ADV7 1423 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 TMEM88BA6NKF7 163 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 NTSR2O95665 410 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 ZNF853P0CG23 659 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 CRY2Q49AN0 593 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 CCDC93Q567U6 631 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 DUSP27Q5VZP5 1158 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 WBP1LQ9NX94 342 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 DBF4Q9UBU7 674 aaPredicted RBP17.41■□□□□ 0.38
VCX3A-202ENST00000398729 ZNF541Q9H0D2 1346 aa17.41■□□□□ 0.38
VCX3A-202ENST00000398729 FKBP4Q02790 459 aaKnown RBP eCLIP17.4■□□□□ 0.38
VCX3A-202ENST00000398729 RPGRQ92834 1020 aaKnown RBP17.4■□□□□ 0.38
VCX3A-202ENST00000398729 UTP14AQ9BVJ6 771 aaKnown RBP17.4■□□□□ 0.38
VCX3A-202ENST00000398729 MRS2Q9HD23 443 aa17.4■□□□□ 0.38
VCX3A-202ENST00000398729 ANKRD36CQ5JPF3 1778 aa17.4■□□□□ 0.38
VCX3A-202ENST00000398729 CTCFP49711 727 aaPredicted RBP17.39■□□□□ 0.37
VCX3A-202ENST00000398729 EAPPQ56P03 285 aaPredicted RBP17.39■□□□□ 0.37
VCX3A-202ENST00000398729 SCN4AP35499 1836 aa17.39■□□□□ 0.37
VCX3A-202ENST00000398729 FZD9O00144 591 aa17.38■□□□□ 0.37
VCX3A-202ENST00000398729 TCIRG1Q13488 830 aa17.38■□□□□ 0.37
VCX3A-202ENST00000398729 HYPKQ9NX55 129 aa17.38■□□□□ 0.37
VCX3A-202ENST00000398729 HACL1Q9UJ83 578 aa17.38■□□□□ 0.37
VCX3A-202ENST00000398729 RNF123Q5XPI4 1314 aa17.38■□□□□ 0.37
VCX3A-202ENST00000398729 HOXA10P31260 410 aaPredicted RBP17.37■□□□□ 0.37
VCX3A-202ENST00000398729 EPHX2P34913 555 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 LBX1P52954 281 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 MAP1SQ66K74 1059 aaPredicted RBP17.37■□□□□ 0.37
VCX3A-202ENST00000398729 ANKRD13DQ6ZTN6 518 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 RTKN2Q8IZC4 609 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 CNTROBQ8N137 903 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 SYNE4Q8N205 404 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 PLBD2Q8NHP8 589 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 NLRP3Q96P20 1036 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 CLEC11AQ9Y240 323 aa17.37■□□□□ 0.37
VCX3A-202ENST00000398729 RASSF10A6NK89 507 aa17.36■□□□□ 0.37
VCX3A-202ENST00000398729 NLRP10Q86W26 655 aa17.36■□□□□ 0.37
VCX3A-202ENST00000398729 RBM17Q96I25 401 aaKnown RBP17.36■□□□□ 0.37
VCX3A-202ENST00000398729 ELL2O00472 640 aaPredicted RBP17.35■□□□□ 0.37
VCX3A-202ENST00000398729 CCDC27Q2M243 656 aa17.35■□□□□ 0.37
VCX3A-202ENST00000398729 DEFB115Q30KQ5 88 aa17.35■□□□□ 0.37
VCX3A-202ENST00000398729 SLC10A5Q5PT55 438 aa17.35■□□□□ 0.37
VCX3A-202ENST00000398729 CC2D2BQ6DHV5 1058 aa17.35■□□□□ 0.37
VCX3A-202ENST00000398729 AIDAQ96BJ3 306 aa17.35■□□□□ 0.37
VCX3A-202ENST00000398729 CRAMP1Q96RY5 1269 aa17.35■□□□□ 0.37
VCX3A-202ENST00000398729 IARSP41252 1262 aaKnown RBP17.34■□□□□ 0.37
VCX3A-202ENST00000398729 PNMA8AQ86V59 439 aaPredicted RBP17.34■□□□□ 0.37
VCX3A-202ENST00000398729 ADAMTSL1Q8N6G6 1762 aa17.34■□□□□ 0.37
VCX3A-202ENST00000398729 CHMP4AQ9BY43 222 aa17.34■□□□□ 0.37
VCX3A-202ENST00000398729 TRMT112Q9UI30 125 aaKnown RBP17.34■□□□□ 0.37
VCX3A-202ENST00000398729 SH3TC1Q8TE82 1336 aa17.33■□□□□ 0.36
VCX3A-202ENST00000398729 HSPA8P11142 646 aaKnown RBP17.33■□□□□ 0.36
VCX3A-202ENST00000398729 FMR1Q06787 632 aaKnown RBP eCLIP17.33■□□□□ 0.36
VCX3A-202ENST00000398729 C3orf67Q6ZVT6 689 aa17.33■□□□□ 0.36
VCX3A-202ENST00000398729 WWC1Q8IX03 1113 aa17.33■□□□□ 0.36
VCX3A-202ENST00000398729 C8orf58Q8NAV2 365 aa17.33■□□□□ 0.36
VCX3A-202ENST00000398729 SNED1Q8TER0 1413 aa17.32■□□□□ 0.36
VCX3A-202ENST00000398729 WDR33Q9C0J8 1336 aaKnown RBP17.32■□□□□ 0.36
VCX3A-202ENST00000398729 GRIPAP1Q4V328 841 aa17.32■□□□□ 0.36
VCX3A-202ENST00000398729 NCBP3Q53F19 620 aaKnown RBP17.32■□□□□ 0.36
VCX3A-202ENST00000398729 GPC2Q8N158 579 aa17.32■□□□□ 0.36
VCX3A-202ENST00000398729 PPEF1O14829 653 aaPredicted RBP17.31■□□□□ 0.36
VCX3A-202ENST00000398729 GOLGA2Q08379 1002 aa17.31■□□□□ 0.36
VCX3A-202ENST00000398729 CCDC30Q5VVM6 783 aa17.31■□□□□ 0.36
VCX3A-202ENST00000398729 RIC3Q7Z5B4 369 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms