RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 GPTP24298 496 aa18.01■□□□□ 0.47
SEC13-204ENST00000397099 AIMP1Q12904 312 aaKnown RBP18.01■□□□□ 0.47
SEC13-204ENST00000397099 TCIRG1Q13488 830 aa18.01■□□□□ 0.47
SEC13-204ENST00000397099 GRIPAP1Q4V328 841 aa18.01■□□□□ 0.47
SEC13-204ENST00000397099 CCDC30Q5VVM6 783 aa18.01■□□□□ 0.47
SEC13-204ENST00000397099 ANKRD13DQ6ZTN6 518 aa18.01■□□□□ 0.47
SEC13-204ENST00000397099 WDR63Q8IWG1 891 aa18.01■□□□□ 0.47
SEC13-204ENST00000397099 UTP14AQ9BVJ6 771 aaKnown RBP18.01■□□□□ 0.47
SEC13-204ENST00000397099 NTSR2O95665 410 aa18■□□□□ 0.47
SEC13-204ENST00000397099 APLP1P51693 650 aa18■□□□□ 0.47
SEC13-204ENST00000397099 ERFEQ4G0M1 354 aa18■□□□□ 0.47
SEC13-204ENST00000397099 SUSD4Q5VX71 490 aa18■□□□□ 0.47
SEC13-204ENST00000397099 RBM46Q8TBY0 533 aaKnown RBP18■□□□□ 0.47
SEC13-204ENST00000397099 TAOK3Q9H2K8 898 aa18■□□□□ 0.47
SEC13-204ENST00000397099 CCDC88AQ3V6T2 1871 aa18■□□□□ 0.47
SEC13-204ENST00000397099 DICER1Q9UPY3 1922 aaKnown RBP18■□□□□ 0.47
SEC13-204ENST00000397099 GLTPD2A6NH11 291 aa17.99■□□□□ 0.47
SEC13-204ENST00000397099 ANXA1P04083 346 aa17.99■□□□□ 0.47
SEC13-204ENST00000397099 HOXA10P31260 410 aaPredicted RBP17.99■□□□□ 0.47
SEC13-204ENST00000397099 SLC10A5Q5PT55 438 aa17.99■□□□□ 0.47
SEC13-204ENST00000397099 CC2D2BQ6DHV5 1058 aa17.99■□□□□ 0.47
SEC13-204ENST00000397099 RPGRQ92834 1020 aaKnown RBP17.99■□□□□ 0.47
SEC13-204ENST00000397099 NLRP3Q96P20 1036 aa17.99■□□□□ 0.47
SEC13-204ENST00000397099 TNRC6CQ9HCJ0 1690 aaKnown RBP17.99■□□□□ 0.47
SEC13-204ENST00000397099 CACNA1FO60840 1977 aa17.99■□□□□ 0.47
SEC13-204ENST00000397099 GOLGA2Q08379 1002 aa17.98■□□□□ 0.47
SEC13-204ENST00000397099 CCDC93Q567U6 631 aa17.98■□□□□ 0.47
SEC13-204ENST00000397099 DPY19L2Q6NUT2 758 aa17.98■□□□□ 0.47
SEC13-204ENST00000397099 NUTM1Q86Y26 1132 aa17.98■□□□□ 0.47
SEC13-204ENST00000397099 RTKN2Q8IZC4 609 aa17.98■□□□□ 0.47
SEC13-204ENST00000397099 TIAM2Q8IVF5 1701 aa17.98■□□□□ 0.47
SEC13-204ENST00000397099 ABCC12Q96J65 1359 aa17.97■□□□□ 0.47
SEC13-204ENST00000397099 DDX58O95786 925 aaKnown RBP17.97■□□□□ 0.47
SEC13-204ENST00000397099 HSP90B1P14625 803 aaKnown RBP17.97■□□□□ 0.47
SEC13-204ENST00000397099 FSTL1Q12841 308 aa17.97■□□□□ 0.47
SEC13-204ENST00000397099 NLRP10Q86W26 655 aa17.97■□□□□ 0.47
SEC13-204ENST00000397099 CRAMP1Q96RY5 1269 aa17.97■□□□□ 0.47
SEC13-204ENST00000397099 VEGFAP15692 232 aaPredicted RBP17.96■□□□□ 0.47
SEC13-204ENST00000397099 TRIM28Q13263 835 aaKnown RBP17.96■□□□□ 0.47
SEC13-204ENST00000397099 C8orf58Q8NAV2 365 aa17.96■□□□□ 0.47
SEC13-204ENST00000397099 C7orf43Q8WVR3 580 aa17.96■□□□□ 0.47
SEC13-204ENST00000397099 RBM17Q96I25 401 aaKnown RBP17.96■□□□□ 0.47
SEC13-204ENST00000397099 STK31Q9BXU1 1019 aa17.96■□□□□ 0.47
SEC13-204ENST00000397099 TMX4Q9H1E5 349 aaPredicted RBP17.96■□□□□ 0.47
SEC13-204ENST00000397099 FAM9BQ8IZU0 186 aa17.95■□□□□ 0.46
SEC13-204ENST00000397099 TRMT112Q9UI30 125 aaKnown RBP17.95■□□□□ 0.46
SEC13-204ENST00000397099 SH3TC1Q8TE82 1336 aa17.95■□□□□ 0.46
SEC13-204ENST00000397099 ELL2O00472 640 aaPredicted RBP17.94■□□□□ 0.46
SEC13-204ENST00000397099 RIC3Q7Z5B4 369 aa17.94■□□□□ 0.46
SEC13-204ENST00000397099 SMC1BQ8NDV3 1235 aa17.94■□□□□ 0.46
SEC13-204ENST00000397099 ISCA1Q9BUE6 129 aa17.94■□□□□ 0.46
SEC13-204ENST00000397099 FKBP4Q02790 459 aaKnown RBP eCLIP17.93■□□□□ 0.46
SEC13-204ENST00000397099 TWISTNBQ3B726 338 aaPredicted RBP17.93■□□□□ 0.46
SEC13-204ENST00000397099 MYH16Q9H6N6 1097 aa17.93■□□□□ 0.46
SEC13-204ENST00000397099 TSR2Q969E8 191 aaKnown RBP17.92■□□□□ 0.46
SEC13-204ENST00000397099 PSMD1Q99460 953 aa17.92■□□□□ 0.46
SEC13-204ENST00000397099 OLFM4Q6UX06 510 aa17.91■□□□□ 0.46
SEC13-204ENST00000397099 TMC4Q7Z404 712 aa17.91■□□□□ 0.46
SEC13-204ENST00000397099 ZNF277Q9NRM2 450 aaPredicted RBP17.91■□□□□ 0.46
SEC13-204ENST00000397099 BBOX1O75936 387 aa17.9■□□□□ 0.46
SEC13-204ENST00000397099 CCDC191Q8NCU4 936 aa17.9■□□□□ 0.46
SEC13-204ENST00000397099 FANCIQ9NVI1 1328 aa17.9■□□□□ 0.46
SEC13-204ENST00000397099 LAMB2P55268 1798 aa17.89■□□□□ 0.45
SEC13-204ENST00000397099 DDNO94850 711 aaPredicted RBP17.89■□□□□ 0.45
SEC13-204ENST00000397099 HTRA3P83110 453 aa17.89■□□□□ 0.45
SEC13-204ENST00000397099 DDX46Q7L014 1031 aaKnown RBP17.89■□□□□ 0.45
SEC13-204ENST00000397099 TSPYL6Q8N831 410 aa17.89■□□□□ 0.45
SEC13-204ENST00000397099 VPS33BQ9H267 617 aa17.89■□□□□ 0.45
SEC13-204ENST00000397099 PHAXQ9H814 394 aaKnown RBP17.89■□□□□ 0.45
SEC13-204ENST00000397099 CCER2I3L3R5 266 aa17.88■□□□□ 0.45
SEC13-204ENST00000397099 PPEF1O14829 653 aaPredicted RBP17.88■□□□□ 0.45
SEC13-204ENST00000397099 NEXNQ0ZGT2 675 aa17.88■□□□□ 0.45
SEC13-204ENST00000397099 KSR2Q6VAB6 950 aa17.88■□□□□ 0.45
SEC13-204ENST00000397099 ZBTB38Q8NAP3 1195 aaPredicted RBP17.88■□□□□ 0.45
SEC13-204ENST00000397099 METTL22Q9BUU2 404 aaPredicted RBP17.88■□□□□ 0.45
SEC13-204ENST00000397099 SYNE4Q8N205 404 aa17.87■□□□□ 0.45
SEC13-204ENST00000397099 SALL2Q9Y467 1007 aaPredicted RBP17.87■□□□□ 0.45
SEC13-204ENST00000397099 DDX60Q8IY21 1712 aaKnown RBP17.86■□□□□ 0.45
SEC13-204ENST00000397099 WDR90Q96KV7 1748 aa17.86■□□□□ 0.45
SEC13-204ENST00000397099 POTECB2RU33 542 aa17.86■□□□□ 0.45
SEC13-204ENST00000397099 ATP5J2-PTCD1G3V325 749 aa17.86■□□□□ 0.45
SEC13-204ENST00000397099 TCERG1O14776 1098 aaKnown RBP17.86■□□□□ 0.45
SEC13-204ENST00000397099 SLC4A2P04920 1241 aa17.86■□□□□ 0.45
SEC13-204ENST00000397099 HCLS1P14317 486 aaPredicted RBP17.86■□□□□ 0.45
SEC13-204ENST00000397099 SF3B3Q15393 1217 aaKnown RBP17.86■□□□□ 0.45
SEC13-204ENST00000397099 DNAJC5GQ8N7S2 189 aa17.86■□□□□ 0.45
SEC13-204ENST00000397099 SUPT20HQ8NEM7 779 aa17.86■□□□□ 0.45
SEC13-204ENST00000397099 JDP2Q8WYK2 163 aa17.86■□□□□ 0.45
SEC13-204ENST00000397099 CWC25Q9NXE8 425 aaPredicted RBP17.86■□□□□ 0.45
SEC13-204ENST00000397099 ATP6V0A2Q9Y487 856 aa17.86■□□□□ 0.45
SEC13-204ENST00000397099 ABCC4O15439 1325 aa17.85■□□□□ 0.45
SEC13-204ENST00000397099 IARSP41252 1262 aaKnown RBP17.85■□□□□ 0.45
SEC13-204ENST00000397099 GRAPQ13588 217 aa17.85■□□□□ 0.45
SEC13-204ENST00000397099 SP8Q8IXZ3 490 aa17.85■□□□□ 0.45
SEC13-204ENST00000397099 GRAPLQ8TC17 118 aaPredicted RBP17.85■□□□□ 0.45
SEC13-204ENST00000397099 SNED1Q8TER0 1413 aa17.85■□□□□ 0.45
SEC13-204ENST00000397099 FAM89AQ96GI7 184 aa17.85■□□□□ 0.45
SEC13-204ENST00000397099 MYD88Q99836 296 aa17.85■□□□□ 0.45
SEC13-204ENST00000397099 IQCA1LA6NCM1 817 aa17.84■□□□□ 0.45
SEC13-204ENST00000397099 IRS4O14654 1257 aaPredicted RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms