RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 ZDHHC9Q9Y397 364 aa16.92■□□□□ 0.3
SNCA-204ENST00000394989 PTPN12Q05209 780 aaKnown RBP16.91■□□□□ 0.3
SNCA-204ENST00000394989 GPATCH3Q96I76 525 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 ERBB4Q15303 1308 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 A0A087WZG4 1122 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 A1BGP04217 495 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 NUCB2P80303 420 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 COPRSQ9NQ92 184 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 FSD2A1L4K1 749 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 MCM2P49736 904 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 CUL4AQ13619 759 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 RASEFQ8IZ41 740 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 SNX14Q9Y5W7 946 aa16.91■□□□□ 0.3
SNCA-204ENST00000394989 TJP1Q07157 1748 aa16.9■□□□□ 0.3
SNCA-204ENST00000394989 XRCC6P12956 609 aaKnown RBP eCLIP16.9■□□□□ 0.3
SNCA-204ENST00000394989 EVA1CP58658 441 aa16.9■□□□□ 0.3
SNCA-204ENST00000394989 EVI5LQ96CN4 794 aa16.9■□□□□ 0.3
SNCA-204ENST00000394989 DIAPH3Q9NSV4 1193 aa16.89■□□□□ 0.3
SNCA-204ENST00000394989 PTH1RQ03431 593 aa16.89■□□□□ 0.29
SNCA-204ENST00000394989 NOL8Q76FK4 1167 aaKnown RBP16.89■□□□□ 0.29
SNCA-204ENST00000394989 GOLGA6L3A6NEY3 463 aa16.88■□□□□ 0.29
SNCA-204ENST00000394989 FOXO4P98177 505 aa16.87■□□□□ 0.29
SNCA-204ENST00000394989 H7C1W4 665 aa16.87■□□□□ 0.29
SNCA-204ENST00000394989 FAM227BQ96M60 508 aa16.87■□□□□ 0.29
SNCA-204ENST00000394989 BOLA2Q9H3K6 86 aa16.87■□□□□ 0.29
SNCA-204ENST00000394989 TFCP2Q12800 502 aa16.87■□□□□ 0.29
SNCA-204ENST00000394989 L1TD1Q5T7N2 865 aaKnown RBP16.87■□□□□ 0.29
SNCA-204ENST00000394989 TTC14Q96N46 770 aa16.87■□□□□ 0.29
SNCA-204ENST00000394989 KIAA1211Q6ZU35 1233 aa16.86■□□□□ 0.29
SNCA-204ENST00000394989 BTG4Q9NY30 223 aa16.86■□□□□ 0.29
SNCA-204ENST00000394989 DBNLQ9UJU6 430 aaKnown RBP16.86■□□□□ 0.29
SNCA-204ENST00000394989 TNNI3KQ59H18 835 aa16.85■□□□□ 0.29
SNCA-204ENST00000394989 LMBR1LQ6UX01 489 aa16.85■□□□□ 0.29
SNCA-204ENST00000394989 RUFY2Q8WXA3 655 aa16.85■□□□□ 0.29
SNCA-204ENST00000394989 INTS4Q96HW7 963 aaKnown RBP16.85■□□□□ 0.29
SNCA-204ENST00000394989 ZBTB3Q9H5J0 574 aa16.85■□□□□ 0.29
SNCA-204ENST00000394989 FPGT-TNNI3KV9GXZ4 949 aa16.85■□□□□ 0.29
SNCA-204ENST00000394989 SKOR2Q2VWA4 1001 aaPredicted RBP16.85■□□□□ 0.29
SNCA-204ENST00000394989 NMIQ13287 307 aaPredicted RBP16.85■□□□□ 0.29
SNCA-204ENST00000394989 MCTP1Q6DN14 999 aa16.85■□□□□ 0.29
SNCA-204ENST00000394989 CHAMP1Q96JM3 812 aa16.85■□□□□ 0.29
SNCA-204ENST00000394989 PTMSP20962 102 aa16.84■□□□□ 0.29
SNCA-204ENST00000394989 EDC3Q96F86 508 aaKnown RBP16.84■□□□□ 0.29
SNCA-204ENST00000394989 SNRKQ9NRH2 765 aa16.84■□□□□ 0.29
SNCA-204ENST00000394989 CWC25Q9NXE8 425 aaPredicted RBP16.84■□□□□ 0.29
SNCA-204ENST00000394989 TMOD3Q9NYL9 352 aa16.84■□□□□ 0.29
SNCA-204ENST00000394989 ASAP1Q9ULH1 1129 aa16.84■□□□□ 0.29
SNCA-204ENST00000394989 A0A0D9SFI3 127 aa16.83■□□□□ 0.29
SNCA-204ENST00000394989 ADCK5Q3MIX3 580 aa16.83■□□□□ 0.29
SNCA-204ENST00000394989 PIGBQ92521 554 aa16.83■□□□□ 0.29
SNCA-204ENST00000394989 KCNB2Q92953 911 aa16.83■□□□□ 0.29
SNCA-204ENST00000394989 CCDC171Q6TFL3 1326 aa16.83■□□□□ 0.29
SNCA-204ENST00000394989 ITGB4P16144 1822 aa16.83■□□□□ 0.28
SNCA-204ENST00000394989 CPA1P15085 419 aa16.83■□□□□ 0.28
SNCA-204ENST00000394989 NECTIN1Q15223 517 aa16.83■□□□□ 0.28
SNCA-204ENST00000394989 DISP2A7MBM2 1401 aa16.83■□□□□ 0.28
SNCA-204ENST00000394989 GOLGA6L22H0YM25 854 aa16.83■□□□□ 0.28
SNCA-204ENST00000394989 AK2P54819 239 aa16.83■□□□□ 0.28
SNCA-204ENST00000394989 LMBRD1Q9NUN5 540 aa16.83■□□□□ 0.28
SNCA-204ENST00000394989 PRPF40BQ6NWY9 871 aaKnown RBP16.82■□□□□ 0.28
SNCA-204ENST00000394989 ARID3AQ99856 593 aa16.82■□□□□ 0.28
SNCA-204ENST00000394989 RUFY3Q7L099 469 aa16.82■□□□□ 0.28
SNCA-204ENST00000394989 ATG9AQ7Z3C6 839 aa16.82■□□□□ 0.28
SNCA-204ENST00000394989 NDUFB9Q9Y6M9 179 aa16.82■□□□□ 0.28
SNCA-204ENST00000394989 BRD1O95696 1058 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 ATP5JP18859 108 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 KLHL40Q2TBA0 621 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 CCDC191Q8NCU4 936 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 DBNDD2Q9BQY9 259 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 LARP6Q9BRS8 491 aaKnown RBP16.81■□□□□ 0.28
SNCA-204ENST00000394989 FSD1Q9BTV5 496 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 COL16A1Q07092 1604 aaPredicted RBP16.81■□□□□ 0.28
SNCA-204ENST00000394989 MED23Q9ULK4 1368 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 ROBO1Q9Y6N7 1651 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 CASTP20810 708 aaKnown RBP16.81■□□□□ 0.28
SNCA-204ENST00000394989 GAS2L3Q86XJ1 694 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 MAP4K1Q92918 833 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.81■□□□□ 0.28
SNCA-204ENST00000394989 COL14A1Q05707 1796 aaKnown RBP16.81■□□□□ 0.28
SNCA-204ENST00000394989 HIP1O00291 1037 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 FOXD4L5Q5VV16 416 aaPredicted RBP16.81■□□□□ 0.28
SNCA-204ENST00000394989 FOXD4L4Q8WXT5 416 aaPredicted RBP16.81■□□□□ 0.28
SNCA-204ENST00000394989 ATG3Q9NT62 314 aa16.81■□□□□ 0.28
SNCA-204ENST00000394989 COL9A3Q14050 684 aaPredicted RBP16.8■□□□□ 0.28
SNCA-204ENST00000394989 CHMP3Q9Y3E7 222 aa16.8■□□□□ 0.28
SNCA-204ENST00000394989 RBM8AQ9Y5S9 174 aaKnown RBP16.8■□□□□ 0.28
SNCA-204ENST00000394989 ZNF589Q86UQ0 364 aaPredicted RBP16.8■□□□□ 0.28
SNCA-204ENST00000394989 DNAJC10Q8IXB1 793 aa16.8■□□□□ 0.28
SNCA-204ENST00000394989 DDX49Q9Y6V7 483 aaKnown RBP16.8■□□□□ 0.28
SNCA-204ENST00000394989 CHGBP05060 677 aa16.79■□□□□ 0.28
SNCA-204ENST00000394989 ISCA1Q9BUE6 129 aa16.79■□□□□ 0.28
SNCA-204ENST00000394989 JCADQ9P266 1359 aa16.79■□□□□ 0.28
SNCA-204ENST00000394989 JAKMIP1Q96N16 626 aaKnown RBP16.79■□□□□ 0.28
SNCA-204ENST00000394989 ZSWIM6Q9HCJ5 1215 aa16.79■□□□□ 0.28
SNCA-204ENST00000394989 CREB3L3Q68CJ9 461 aa16.78■□□□□ 0.28
SNCA-204ENST00000394989 PLCH1Q4KWH8 1693 aa16.78■□□□□ 0.28
SNCA-204ENST00000394989 COL22A1Q8NFW1 1626 aaPredicted RBP16.78■□□□□ 0.28
SNCA-204ENST00000394989 LARGE1O95461 756 aa16.78■□□□□ 0.28
SNCA-204ENST00000394989 TAF6LQ9Y6J9 622 aa16.78■□□□□ 0.28
SNCA-204ENST00000394989 ZNF594Q96JF6 807 aaPredicted RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms