RNA–Protein interactions for RNA: ENST00000394803.9

UBE2D3-208, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 2,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-208ENST00000394803 PKNOX2Q96KN3 472 aa11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 NUP62CLQ9H1M0 184 aa11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 RBM8AQ9Y5S9 174 aaKnown RBP11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 RFX7Q2KHR2 1363 aa11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 NFAT5O94916 1531 aa11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 UTYO14607 1347 aa11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 DNM1Q05193 864 aaKnown RBP11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 CREB3L3Q68CJ9 461 aa11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 ZNF530Q6P9A1 599 aaPredicted RBP11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 PHF8Q9UPP1 1060 aa11.94□□□□□ -0.5
UBE2D3-208ENST00000394803 NPHP3Q7Z494 1330 aa11.93□□□□□ -0.5
UBE2D3-208ENST00000394803 AACSQ86V21 672 aa11.93□□□□□ -0.5
UBE2D3-208ENST00000394803 MAP3K2Q9Y2U5 619 aa11.93□□□□□ -0.5
UBE2D3-208ENST00000394803 KIF3AQ9Y496 699 aa11.93□□□□□ -0.5
UBE2D3-208ENST00000394803 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.92□□□□□ -0.5
UBE2D3-208ENST00000394803 C14orf37Q86TY3 774 aa11.92□□□□□ -0.5
UBE2D3-208ENST00000394803 SMAP1Q8IYB5 467 aaPredicted RBP11.92□□□□□ -0.5
UBE2D3-208ENST00000394803 CCDC94Q9BW85 323 aaPredicted RBP11.92□□□□□ -0.5
UBE2D3-208ENST00000394803 GRM8O00222 908 aa11.92□□□□□ -0.5
UBE2D3-208ENST00000394803 PTH1RQ03431 593 aa11.92□□□□□ -0.5
UBE2D3-208ENST00000394803 TSGA10IPQ3SY00 556 aa11.92□□□□□ -0.5
UBE2D3-208ENST00000394803 TICAM2Q86XR7 235 aa11.92□□□□□ -0.5
UBE2D3-208ENST00000394803 RNMTO43148 476 aaKnown RBP11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 ME3Q16798 604 aa11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 GIMAP6Q6P9H5 292 aa11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 HEG1Q9ULI3 1381 aa11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 SLC27A2O14975 620 aa11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 PLCB2Q00722 1185 aa11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 NEXNQ0ZGT2 675 aa11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 FSD1Q9BTV5 496 aa11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 TNMDQ9H2S6 317 aa11.91□□□□□ -0.5
UBE2D3-208ENST00000394803 MRC1P22897 1456 aa11.9□□□□□ -0.5
UBE2D3-208ENST00000394803 JCADQ9P266 1359 aa11.9□□□□□ -0.5
UBE2D3-208ENST00000394803 GIGYF1O75420 1035 aaPredicted RBP11.9□□□□□ -0.5
UBE2D3-208ENST00000394803 LARGE1O95461 756 aa11.9□□□□□ -0.5
UBE2D3-208ENST00000394803 RPS6KB1P23443 525 aa11.9□□□□□ -0.5
UBE2D3-208ENST00000394803 NUTM2GQ5VZR2 741 aa11.9□□□□□ -0.5
UBE2D3-208ENST00000394803 KIAA1524Q8TCG1 905 aa11.9□□□□□ -0.5
UBE2D3-208ENST00000394803 LGR6Q9HBX8 967 aa11.9□□□□□ -0.5
UBE2D3-208ENST00000394803 NMIQ13287 307 aaPredicted RBP11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 ADCK5Q3MIX3 580 aa11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 NBPF6Q5VWK0 638 aa11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 LARP1Q6PKG0 1096 aaKnown RBP11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 USHBP1Q8N6Y0 703 aa11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 SPATA32Q96LK8 384 aa11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 NBPF4Q96M43 638 aa11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 ZSCAN16Q9H4T2 348 aaPredicted RBP11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 TTC12Q9H892 705 aaPredicted RBP11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 DDX21Q9NR30 783 aaKnown RBP eCLIP11.9□□□□□ -0.51
UBE2D3-208ENST00000394803 MED23Q9ULK4 1368 aa11.89□□□□□ -0.51
UBE2D3-208ENST00000394803 CAMTA1Q9Y6Y1 1673 aa11.89□□□□□ -0.51
UBE2D3-208ENST00000394803 KDM4FA0A1W2PPD8 638 aa11.89□□□□□ -0.51
UBE2D3-208ENST00000394803 TYRO3Q06418 890 aa11.89□□□□□ -0.51
UBE2D3-208ENST00000394803 CFAP45Q9UL16 551 aa11.89□□□□□ -0.51
UBE2D3-208ENST00000394803 TPCN1Q9ULQ1 816 aa11.89□□□□□ -0.51
UBE2D3-208ENST00000394803 CTAGE5O15320 804 aa11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 KCNA6P17658 529 aa11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 U3KPZ7 1027 aaPredicted RBP11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 SIPA1L3O60292 1781 aaPredicted RBP11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 HMGB1P09429 215 aaKnown RBP11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 ATL3Q6DD88 541 aa11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 RBM43Q6ZSC3 357 aaKnown RBP11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 CLSTN2Q9H4D0 955 aa11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 ADAMTS7Q9UKP4 1686 aa11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 PLEKHG2Q9H7P9 1386 aa11.88□□□□□ -0.51
UBE2D3-208ENST00000394803 NEMFO60524 1076 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 CPA1P15085 419 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 PSME1Q06323 249 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 SYCP1Q15431 976 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 TTC6Q86TZ1 520 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 CDC25BP30305 580 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 USPL1Q5W0Q7 1092 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 ZNF830Q96NB3 372 aaPredicted RBP11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 LARP6Q9BRS8 491 aaKnown RBP11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 LLPHQ9BRT6 129 aaKnown RBP11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 SLIT3O75094 1523 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 COL15A1P39059 1388 aa11.87□□□□□ -0.51
UBE2D3-208ENST00000394803 NPHP4O75161 1426 aaPredicted RBP11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 SASH1O94885 1247 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 MPRIPQ6WCQ1 1025 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 CDC37L1Q7L3B6 337 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 DRC7Q8IY82 874 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 NECAB1Q8N987 351 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 TDRD7Q8NHU6 1098 aaKnown RBP11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 BICC1Q9H694 974 aaKnown RBP11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 PA2G4Q9UQ80 394 aaKnown RBP11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 MRVI1Q9Y6F6 885 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 H3BQV1 296 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 ATP5JP18859 108 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 ST3GAL1Q11201 340 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 DHX8Q14562 1220 aaKnown RBP11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 IFFO2Q5TF58 517 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 RIC3Q7Z5B4 369 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 BICD2Q8TD16 824 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 LEO1Q8WVC0 666 aaPredicted RBP11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 EAF2Q96CJ1 260 aaPredicted RBP11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 SUCLG2Q96I99 432 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 FAM227BQ96M60 508 aa11.86□□□□□ -0.51
UBE2D3-208ENST00000394803 RGPD2P0DJD1 1756 aa11.85□□□□□ -0.51
UBE2D3-208ENST00000394803 GTF3C6Q969F1 213 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms