RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 ATP2B1P20020 1258 aa19.02■□□□□ 0.63
PCDH1-203ENST00000394536 KRT32Q14532 448 aa19.02■□□□□ 0.63
PCDH1-203ENST00000394536 CDC37L1Q7L3B6 337 aa19.02■□□□□ 0.63
PCDH1-203ENST00000394536 CHST3Q7LGC8 479 aa19.01■□□□□ 0.63
PCDH1-203ENST00000394536 XAGE3Q8WTP9 111 aa19.01■□□□□ 0.63
PCDH1-203ENST00000394536 TTC41PQ6P2S7 1318 aa19.01■□□□□ 0.63
PCDH1-203ENST00000394536 MROH2AA6NES4 1674 aa19.01■□□□□ 0.63
PCDH1-203ENST00000394536 GOLIM4O00461 696 aa19.01■□□□□ 0.63
PCDH1-203ENST00000394536 PRIMPOLQ96LW4 560 aa19.01■□□□□ 0.63
PCDH1-203ENST00000394536 CDK12Q9NYV4 1490 aaPredicted RBP19.01■□□□□ 0.63
PCDH1-203ENST00000394536 EIF4A1P60842 406 aaKnown RBP19■□□□□ 0.63
PCDH1-203ENST00000394536 CCDC129Q6ZRS4 1044 aa19■□□□□ 0.63
PCDH1-203ENST00000394536 KCNH5Q8NCM2 988 aa19■□□□□ 0.63
PCDH1-203ENST00000394536 SNRKQ9NRH2 765 aa19■□□□□ 0.63
PCDH1-203ENST00000394536 TATP17735 454 aaPredicted RBP19■□□□□ 0.63
PCDH1-203ENST00000394536 TRDNQ13061 729 aa19■□□□□ 0.63
PCDH1-203ENST00000394536 LSG1Q9H089 658 aaKnown RBP19■□□□□ 0.63
PCDH1-203ENST00000394536 HECW2Q9P2P5 1572 aa19■□□□□ 0.63
PCDH1-203ENST00000394536 BIN1O00499 593 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 AMOTQ4VCS5 1084 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 PIBF1Q8WXW3 757 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 MTMR6Q9Y217 621 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 LIG1P18858 919 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 HAND2P61296 217 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 ISM2Q6H9L7 571 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 Q6ZUG5 572 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 LINS1Q8NG48 757 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 DDX19AQ9NUU7 478 aaKnown RBP18.99■□□□□ 0.63
PCDH1-203ENST00000394536 ARHGEF40Q8TER5 1519 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 ANKRD24Q8TF21 1146 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 ZNF396Q96N95 335 aaPredicted RBP18.99■□□□□ 0.63
PCDH1-203ENST00000394536 ATP10DQ9P241 1426 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 NEO1Q92859 1461 aa18.99■□□□□ 0.63
PCDH1-203ENST00000394536 NFXL1Q6ZNB6 911 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 PDLIM2Q96JY6 352 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 NAT10Q9H0A0 1025 aaKnown RBP18.98■□□□□ 0.63
PCDH1-203ENST00000394536 KIDINS220Q9ULH0 1771 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 PROSER3Q2NL68 480 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 FAM177A1Q8N128 213 aaPredicted RBP18.98■□□□□ 0.63
PCDH1-203ENST00000394536 EAF2Q96CJ1 260 aaPredicted RBP18.98■□□□□ 0.63
PCDH1-203ENST00000394536 TPCN1Q9ULQ1 816 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 LMTK2Q8IWU2 1503 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 SLC27A2O14975 620 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 JAK2O60674 1132 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 POLR3DP05423 398 aaPredicted RBP18.98■□□□□ 0.63
PCDH1-203ENST00000394536 CABP4P57796 275 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 BEND3Q5T5X7 828 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 SUCLG2Q96I99 432 aa18.98■□□□□ 0.63
PCDH1-203ENST00000394536 PRAMEF22A3QJZ6 481 aa18.97■□□□□ 0.63
PCDH1-203ENST00000394536 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.97■□□□□ 0.63
PCDH1-203ENST00000394536 V9GYY5 206 aaPredicted RBP18.97■□□□□ 0.63
PCDH1-203ENST00000394536 RGS12O14924 1447 aa18.97■□□□□ 0.63
PCDH1-203ENST00000394536 ALDH1L1O75891 902 aa18.97■□□□□ 0.63
PCDH1-203ENST00000394536 AKAP4Q5JQC9 854 aa18.97■□□□□ 0.63
PCDH1-203ENST00000394536 TTC6Q86TZ1 520 aa18.97■□□□□ 0.63
PCDH1-203ENST00000394536 PROSER2Q86WR7 435 aaPredicted RBP18.97■□□□□ 0.63
PCDH1-203ENST00000394536 CAMSAP1Q5T5Y3 1602 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 CPLX2Q6PUV4 134 aaKnown RBP18.96■□□□□ 0.63
PCDH1-203ENST00000394536 ANKRD13DQ6ZTN6 518 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 CCAR1Q8IX12 1150 aaKnown RBP18.96■□□□□ 0.63
PCDH1-203ENST00000394536 FSIP1Q8NA03 581 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 COL3A1P02461 1466 aaPredicted RBP18.96■□□□□ 0.63
PCDH1-203ENST00000394536 NEXMIFQ5QGS0 1516 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 NFATC2IPQ8NCF5 419 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 PI4K2BQ8TCG2 481 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 ALKQ9UM73 1620 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 CEP57L1Q8IYX8 460 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 ARHGAP31Q2M1Z3 1444 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 VWDEQ8N2E2 1590 aa18.96■□□□□ 0.63
PCDH1-203ENST00000394536 CDK11BP21127 795 aaKnown RBP18.95■□□□□ 0.62
PCDH1-203ENST00000394536 ERCC4Q92889 916 aaPredicted RBP18.95■□□□□ 0.62
PCDH1-203ENST00000394536 ARHGEF10O15013 1369 aa18.95■□□□□ 0.62
PCDH1-203ENST00000394536 A0A0D9SFI3 127 aa18.95■□□□□ 0.62
PCDH1-203ENST00000394536 ABCA9Q8IUA7 1624 aa18.95■□□□□ 0.62
PCDH1-203ENST00000394536 CPSF1Q10570 1443 aaKnown RBP18.95■□□□□ 0.62
PCDH1-203ENST00000394536 AOX1Q06278 1338 aa18.95■□□□□ 0.62
PCDH1-203ENST00000394536 IGSF1Q8N6C5 1336 aa18.95■□□□□ 0.62
PCDH1-203ENST00000394536 PDILTQ8N807 584 aa18.95■□□□□ 0.62
PCDH1-203ENST00000394536 CD163L1Q9NR16 1453 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 NPHP3Q7Z494 1330 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 LRMPQ12912 555 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 PTPN14Q15678 1187 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 SHPRHQ149N8 1683 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 MYRIPQ8NFW9 859 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 TFCP2Q12800 502 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 TRIM29Q14134 588 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 ANKLE2Q86XL3 938 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 IP6K1Q92551 441 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 ZBTB3Q9H5J0 574 aa18.94■□□□□ 0.62
PCDH1-203ENST00000394536 TLR7Q9NYK1 1049 aaKnown RBP18.94■□□□□ 0.62
PCDH1-203ENST00000394536 TMEM2Q9UHN6 1383 aa18.93■□□□□ 0.62
PCDH1-203ENST00000394536 RIOK3O14730 519 aaKnown RBP18.93■□□□□ 0.62
PCDH1-203ENST00000394536 LMBR1LQ6UX01 489 aa18.93■□□□□ 0.62
PCDH1-203ENST00000394536 CEP126Q9P2H0 1117 aa18.93■□□□□ 0.62
PCDH1-203ENST00000394536 U3KPZ7 1027 aaPredicted RBP18.93■□□□□ 0.62
PCDH1-203ENST00000394536 RNMTO43148 476 aaKnown RBP18.93■□□□□ 0.62
PCDH1-203ENST00000394536 IFIT1P09914 478 aaKnown RBP18.93■□□□□ 0.62
PCDH1-203ENST00000394536 TERF1P54274 439 aa18.93■□□□□ 0.62
PCDH1-203ENST00000394536 LRRFIP1Q32MZ4 808 aaKnown RBP18.93■□□□□ 0.62
PCDH1-203ENST00000394536 PYCARDQ9ULZ3 195 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms