RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 AFDNP55196 1824 aaKnown RBP18.3■□□□□ 0.52
GPC3-202ENST00000394299 A0A0G2JS52 829 aa18.3■□□□□ 0.52
GPC3-202ENST00000394299 PTH1RQ03431 593 aa18.3■□□□□ 0.52
GPC3-202ENST00000394299 RASEFQ8IZ41 740 aa18.3■□□□□ 0.52
GPC3-202ENST00000394299 DIAPH3Q9NSV4 1193 aa18.3■□□□□ 0.52
GPC3-202ENST00000394299 LAMB4A4D0S4 1761 aa18.29■□□□□ 0.52
GPC3-202ENST00000394299 HSPA4P34932 840 aa18.29■□□□□ 0.52
GPC3-202ENST00000394299 FAM227BQ96M60 508 aa18.29■□□□□ 0.52
GPC3-202ENST00000394299 DBNLQ9UJU6 430 aaKnown RBP18.29■□□□□ 0.52
GPC3-202ENST00000394299 CIZ1Q9ULV3 898 aaPredicted RBP18.29■□□□□ 0.52
GPC3-202ENST00000394299 PRIM1P49642 420 aaKnown RBP18.28■□□□□ 0.52
GPC3-202ENST00000394299 SYNE4Q8N205 404 aa18.28■□□□□ 0.52
GPC3-202ENST00000394299 CCDC85AQ96PX6 553 aaPredicted RBP18.28■□□□□ 0.52
GPC3-202ENST00000394299 GZF1Q9H116 711 aaPredicted RBP18.28■□□□□ 0.52
GPC3-202ENST00000394299 DISP2A7MBM2 1401 aa18.28■□□□□ 0.52
GPC3-202ENST00000394299 TNNI3KQ59H18 835 aa18.28■□□□□ 0.52
GPC3-202ENST00000394299 EVI5LQ96CN4 794 aa18.28■□□□□ 0.52
GPC3-202ENST00000394299 FPGT-TNNI3KV9GXZ4 949 aa18.28■□□□□ 0.52
GPC3-202ENST00000394299 CHGBP05060 677 aa18.27■□□□□ 0.52
GPC3-202ENST00000394299 TMX3Q96JJ7 454 aa18.27■□□□□ 0.52
GPC3-202ENST00000394299 DBNDD2Q9BQY9 259 aa18.27■□□□□ 0.52
GPC3-202ENST00000394299 LARP6Q9BRS8 491 aaKnown RBP18.27■□□□□ 0.52
GPC3-202ENST00000394299 AK9Q5TCS8 1911 aa18.27■□□□□ 0.52
GPC3-202ENST00000394299 HLFQ16534 295 aa18.27■□□□□ 0.52
GPC3-202ENST00000394299 CCDC191Q8NCU4 936 aa18.27■□□□□ 0.52
GPC3-202ENST00000394299 PAPPAQ13219 1627 aa18.27■□□□□ 0.51
GPC3-202ENST00000394299 RAD50Q92878 1312 aa18.27■□□□□ 0.51
GPC3-202ENST00000394299 CPA1P15085 419 aa18.26■□□□□ 0.51
GPC3-202ENST00000394299 TCIRG1Q13488 830 aa18.26■□□□□ 0.51
GPC3-202ENST00000394299 LRRC24Q50LG9 513 aa18.26■□□□□ 0.51
GPC3-202ENST00000394299 FAM89AQ96GI7 184 aa18.26■□□□□ 0.51
GPC3-202ENST00000394299 SNX14Q9Y5W7 946 aa18.26■□□□□ 0.51
GPC3-202ENST00000394299 ANAPC15P60006 121 aa18.26■□□□□ 0.51
GPC3-202ENST00000394299 NMIQ13287 307 aaPredicted RBP18.26■□□□□ 0.51
GPC3-202ENST00000394299 KIAA1211Q6ZU35 1233 aa18.26■□□□□ 0.51
GPC3-202ENST00000394299 ACSBG1Q96GR2 724 aa18.26■□□□□ 0.51
GPC3-202ENST00000394299 COL16A1Q07092 1604 aaPredicted RBP18.26■□□□□ 0.51
GPC3-202ENST00000394299 ATG9AQ7Z3C6 839 aa18.25■□□□□ 0.51
GPC3-202ENST00000394299 ISCA1Q9BUE6 129 aa18.25■□□□□ 0.51
GPC3-202ENST00000394299 PUS3Q9BZE2 481 aaKnown RBP18.25■□□□□ 0.51
GPC3-202ENST00000394299 TRAK2O60296 914 aa18.25■□□□□ 0.51
GPC3-202ENST00000394299 STARD3NLO95772 234 aa18.25■□□□□ 0.51
GPC3-202ENST00000394299 GPTP24298 496 aa18.25■□□□□ 0.51
GPC3-202ENST00000394299 TIMM10P62072 90 aa18.25■□□□□ 0.51
GPC3-202ENST00000394299 BCL9O00512 1426 aa18.24■□□□□ 0.51
GPC3-202ENST00000394299 VSIG10Q8N0Z9 540 aa18.24■□□□□ 0.51
GPC3-202ENST00000394299 FSD1Q9BTV5 496 aa18.24■□□□□ 0.51
GPC3-202ENST00000394299 ZBTB1Q9Y2K1 713 aa18.24■□□□□ 0.51
GPC3-202ENST00000394299 COL15A1P39059 1388 aa18.24■□□□□ 0.51
GPC3-202ENST00000394299 A0A0D9SFI3 127 aa18.24■□□□□ 0.51
GPC3-202ENST00000394299 CYP19A1P11511 503 aaPredicted RBP18.24■□□□□ 0.51
GPC3-202ENST00000394299 CHAMP1Q96JM3 812 aa18.24■□□□□ 0.51
GPC3-202ENST00000394299 NEUROD6Q96NK8 337 aa18.24■□□□□ 0.51
GPC3-202ENST00000394299 COL14A1Q05707 1796 aaKnown RBP18.24■□□□□ 0.51
GPC3-202ENST00000394299 LTBP4Q8N2S1 1624 aa18.23■□□□□ 0.51
GPC3-202ENST00000394299 FOXD4L5Q5VV16 416 aaPredicted RBP18.23■□□□□ 0.51
GPC3-202ENST00000394299 PRPF40BQ6NWY9 871 aaKnown RBP18.23■□□□□ 0.51
GPC3-202ENST00000394299 FOXD4L4Q8WXT5 416 aaPredicted RBP18.23■□□□□ 0.51
GPC3-202ENST00000394299 DNAJC2Q99543 621 aaKnown RBP18.23■□□□□ 0.51
GPC3-202ENST00000394299 TEX13AQ9BXU3 409 aaPredicted RBP18.23■□□□□ 0.51
GPC3-202ENST00000394299 DTNBO60941 627 aa18.22■□□□□ 0.51
GPC3-202ENST00000394299 COL9A3Q14050 684 aaPredicted RBP18.22■□□□□ 0.51
GPC3-202ENST00000394299 ADCK5Q3MIX3 580 aa18.22■□□□□ 0.51
GPC3-202ENST00000394299 KIF6Q6ZMV9 814 aa18.22■□□□□ 0.51
GPC3-202ENST00000394299 RUFY2Q8WXA3 655 aa18.22■□□□□ 0.51
GPC3-202ENST00000394299 AHDC1Q5TGY3 1603 aaPredicted RBP18.22■□□□□ 0.51
GPC3-202ENST00000394299 NUP188Q5SRE5 1749 aa18.22■□□□□ 0.51
GPC3-202ENST00000394299 TBC1D2BQ9UPU7 963 aa18.22■□□□□ 0.51
GPC3-202ENST00000394299 ZDHHC9Q9Y397 364 aa18.22■□□□□ 0.51
GPC3-202ENST00000394299 SPATA31A1Q5TZJ5 1347 aa18.21■□□□□ 0.51
GPC3-202ENST00000394299 ITGB4P16144 1822 aa18.21■□□□□ 0.51
GPC3-202ENST00000394299 SLFNL1Q499Z3 407 aa18.21■□□□□ 0.51
GPC3-202ENST00000394299 IL17RAQ96F46 866 aa18.21■□□□□ 0.51
GPC3-202ENST00000394299 ATP5JP18859 108 aa18.2■□□□□ 0.5
GPC3-202ENST00000394299 DDB1Q16531 1140 aa18.2■□□□□ 0.5
GPC3-202ENST00000394299 ZNF589Q86UQ0 364 aaPredicted RBP18.2■□□□□ 0.5
GPC3-202ENST00000394299 MARCH10Q8NA82 808 aaPredicted RBP18.2■□□□□ 0.5
GPC3-202ENST00000394299 GBP4Q96PP9 640 aa18.2■□□□□ 0.5
GPC3-202ENST00000394299 MAP3K15Q6ZN16 1313 aa18.19■□□□□ 0.5
GPC3-202ENST00000394299 CYP2E1P05181 493 aaPredicted RBP18.19■□□□□ 0.5
GPC3-202ENST00000394299 DDX46Q7L014 1031 aaKnown RBP18.19■□□□□ 0.5
GPC3-202ENST00000394299 TJP1Q07157 1748 aa18.19■□□□□ 0.5
GPC3-202ENST00000394299 EYA2O00167 538 aa18.19■□□□□ 0.5
GPC3-202ENST00000394299 EPB41L2O43491 1005 aaKnown RBP18.19■□□□□ 0.5
GPC3-202ENST00000394299 BAG4O95429 457 aaKnown RBP18.19■□□□□ 0.5
GPC3-202ENST00000394299 GIGYF2Q6Y7W6 1299 aaKnown RBP18.19■□□□□ 0.5
GPC3-202ENST00000394299 SEC62Q99442 399 aaKnown RBP18.19■□□□□ 0.5
GPC3-202ENST00000394299 TAF6LQ9Y6J9 622 aa18.19■□□□□ 0.5
GPC3-202ENST00000394299 CCDC171Q6TFL3 1326 aa18.18■□□□□ 0.5
GPC3-202ENST00000394299 DDX11L8A8MPP1 907 aa18.18■□□□□ 0.5
GPC3-202ENST00000394299 CASTP20810 708 aaKnown RBP18.18■□□□□ 0.5
GPC3-202ENST00000394299 CWC22Q9HCG8 908 aaKnown RBP18.18■□□□□ 0.5
GPC3-202ENST00000394299 RBM8AQ9Y5S9 174 aaKnown RBP18.18■□□□□ 0.5
GPC3-202ENST00000394299 AK2P54819 239 aa18.18■□□□□ 0.5
GPC3-202ENST00000394299 NECTIN1Q15223 517 aa18.18■□□□□ 0.5
GPC3-202ENST00000394299 PRKCSHP14314 528 aaPredicted RBP18.17■□□□□ 0.5
GPC3-202ENST00000394299 CUL4AQ13619 759 aa18.17■□□□□ 0.5
GPC3-202ENST00000394299 CCDC129Q6ZRS4 1044 aa18.17■□□□□ 0.5
GPC3-202ENST00000394299 TTC14Q96N46 770 aa18.17■□□□□ 0.5
GPC3-202ENST00000394299 COL22A1Q8NFW1 1626 aaPredicted RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms