RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 VEZTQ9HBM0 779 aa9.92□□□□□ -0.82
LIMS1-203ENST00000393310 ZFYVE28Q9HCC9 887 aa9.92□□□□□ -0.82
LIMS1-203ENST00000393310 GBA2Q9HCG7 927 aaPredicted RBP9.92□□□□□ -0.82
LIMS1-203ENST00000393310 INSRP06213 1382 aa9.92□□□□□ -0.82
LIMS1-203ENST00000393310 COL16A1Q07092 1604 aaPredicted RBP9.92□□□□□ -0.82
LIMS1-203ENST00000393310 DLGAP5Q15398 846 aa9.92□□□□□ -0.82
LIMS1-203ENST00000393310 NEUROD2Q15784 382 aa9.92□□□□□ -0.82
LIMS1-203ENST00000393310 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.92□□□□□ -0.82
LIMS1-203ENST00000393310 PHKG2P15735 406 aa9.92□□□□□ -0.82
LIMS1-203ENST00000393310 FKBP1BP68106 108 aa9.92□□□□□ -0.82
LIMS1-203ENST00000393310 AIMP1Q12904 312 aaKnown RBP9.92□□□□□ -0.82
LIMS1-203ENST00000393310 CAVIN4Q5BKX8 364 aa9.92□□□□□ -0.82
LIMS1-203ENST00000393310 FKTNO75072 461 aa9.91□□□□□ -0.82
LIMS1-203ENST00000393310 ZNF804AQ7Z570 1209 aa9.91□□□□□ -0.82
LIMS1-203ENST00000393310 MPHOSPH6Q99547 160 aaKnown RBP9.91□□□□□ -0.82
LIMS1-203ENST00000393310 COL14A1Q05707 1796 aaKnown RBP9.91□□□□□ -0.82
LIMS1-203ENST00000393310 TAF7Q15545 349 aaPredicted RBP9.91□□□□□ -0.82
LIMS1-203ENST00000393310 CASC1Q6TDU7 716 aa9.91□□□□□ -0.82
LIMS1-203ENST00000393310 SECISBP2LQ93073 1101 aaKnown RBP9.91□□□□□ -0.82
LIMS1-203ENST00000393310 KCNH4Q9UQ05 1017 aa9.91□□□□□ -0.82
LIMS1-203ENST00000393310 PPEF1O14829 653 aaPredicted RBP9.91□□□□□ -0.82
LIMS1-203ENST00000393310 HTATSF1O43719 755 aaKnown RBP9.91□□□□□ -0.82
LIMS1-203ENST00000393310 DNAJC10Q8IXB1 793 aa9.91□□□□□ -0.82
LIMS1-203ENST00000393310 CNNM1Q9NRU3 951 aa9.91□□□□□ -0.82
LIMS1-203ENST00000393310 LRRIQ1Q96JM4 1722 aa9.91□□□□□ -0.82
LIMS1-203ENST00000393310 LRRFIP1Q32MZ4 808 aaKnown RBP9.91□□□□□ -0.82
LIMS1-203ENST00000393310 ZC3H15Q8WU90 426 aaKnown RBP9.91□□□□□ -0.82
LIMS1-203ENST00000393310 PICK1Q9NRD5 415 aa9.91□□□□□ -0.82
LIMS1-203ENST00000393310 LDHCP07864 332 aa9.9□□□□□ -0.82
LIMS1-203ENST00000393310 USP48Q86UV5 1035 aa9.9□□□□□ -0.82
LIMS1-203ENST00000393310 PNPLA7Q6ZV29 1317 aa9.9□□□□□ -0.82
LIMS1-203ENST00000393310 GPC2Q8N158 579 aa9.9□□□□□ -0.82
LIMS1-203ENST00000393310 LRRFIP2Q9Y608 721 aaKnown RBP9.9□□□□□ -0.82
LIMS1-203ENST00000393310 IVNS1ABPQ9Y6Y0 642 aa9.9□□□□□ -0.82
LIMS1-203ENST00000393310 HMOX1P09601 288 aa9.9□□□□□ -0.83
LIMS1-203ENST00000393310 RAET1EQ8TD07 263 aa9.9□□□□□ -0.83
LIMS1-203ENST00000393310 SIN3AQ96ST3 1273 aa9.9□□□□□ -0.83
LIMS1-203ENST00000393310 C9orf78Q9NZ63 289 aaPredicted RBP9.9□□□□□ -0.83
LIMS1-203ENST00000393310 MANSC4A6NHS7 340 aaPredicted RBP9.89□□□□□ -0.83
LIMS1-203ENST00000393310 MAP3K9P80192 1104 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 ZNRF3Q9ULT6 936 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 PRR36Q9H6K5 1346 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 LBX1P52954 281 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 PRMT2P55345 433 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 WASHC4Q2M389 1173 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 WDR78Q5VTH9 848 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 NOL8Q76FK4 1167 aaKnown RBP9.89□□□□□ -0.83
LIMS1-203ENST00000393310 PAIP2Q9BPZ3 127 aaKnown RBP9.89□□□□□ -0.83
LIMS1-203ENST00000393310 SPC25Q9HBM1 224 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 SUPT16HQ9Y5B9 1047 aaKnown RBP9.89□□□□□ -0.83
LIMS1-203ENST00000393310 NEFHP12036 1026 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 ARID4AP29374 1257 aaPredicted RBP9.89□□□□□ -0.83
LIMS1-203ENST00000393310 HELBQ8NG08 1087 aaPredicted RBP9.89□□□□□ -0.83
LIMS1-203ENST00000393310 ABHD8Q96I13 439 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 RNF123Q5XPI4 1314 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 EFCC1Q9HA90 598 aa9.89□□□□□ -0.83
LIMS1-203ENST00000393310 HSP90AB2PQ58FF8 381 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 NLGN2Q8NFZ4 835 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 PIGBQ92521 554 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 IQGAP3Q86VI3 1631 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 RFX1P22670 979 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 SMCR8Q8TEV9 937 aaPredicted RBP9.88□□□□□ -0.83
LIMS1-203ENST00000393310 PANK3Q9H999 370 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 SH3TC1Q8TE82 1336 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 WDR33Q9C0J8 1336 aaKnown RBP9.88□□□□□ -0.83
LIMS1-203ENST00000393310 ATP2B4P23634 1241 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 CCDC30Q5VVM6 783 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 COA7Q96BR5 231 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 LAMC1P11047 1609 aa9.88□□□□□ -0.83
LIMS1-203ENST00000393310 PNMA3Q9UL41 463 aa9.87□□□□□ -0.83
LIMS1-203ENST00000393310 CCDC57Q2TAC2 916 aa9.87□□□□□ -0.83
LIMS1-203ENST00000393310 SLC52A2Q9HAB3 445 aa9.87□□□□□ -0.83
LIMS1-203ENST00000393310 MS4A1P11836 297 aa9.87□□□□□ -0.83
LIMS1-203ENST00000393310 CERS3Q8IU89 383 aa9.87□□□□□ -0.83
LIMS1-203ENST00000393310 AKT1S1Q96B36 256 aa9.87□□□□□ -0.83
LIMS1-203ENST00000393310 ERBB4Q15303 1308 aa9.87□□□□□ -0.83
LIMS1-203ENST00000393310 CD163L1Q9NR16 1453 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 B4DLN1 442 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 MYL6BP14649 208 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 GPTP24298 496 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 MRPL12P52815 198 aaKnown RBP9.86□□□□□ -0.83
LIMS1-203ENST00000393310 RGMBQ6NW40 437 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 ZGPATQ8N5A5 531 aaKnown RBP9.86□□□□□ -0.83
LIMS1-203ENST00000393310 DNAJC2Q99543 621 aaKnown RBP9.86□□□□□ -0.83
LIMS1-203ENST00000393310 CDHR2Q9BYE9 1310 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 USP32Q8NFA0 1604 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 APBB1O00213 710 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 IFIT1P09914 478 aaKnown RBP9.86□□□□□ -0.83
LIMS1-203ENST00000393310 CHRNA5P30532 468 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 PRPF40BQ6NWY9 871 aaKnown RBP9.86□□□□□ -0.83
LIMS1-203ENST00000393310 NECTIN2Q92692 538 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 PXDNQ92626 1479 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 GNAI1P63096 354 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 SPTY2D1Q68D10 685 aaPredicted RBP9.86□□□□□ -0.83
LIMS1-203ENST00000393310 TMEM87AQ8NBN3 555 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 USP31Q70CQ4 1352 aa9.86□□□□□ -0.83
LIMS1-203ENST00000393310 RNMTO43148 476 aaKnown RBP9.85□□□□□ -0.83
LIMS1-203ENST00000393310 ZNF827Q17R98 1081 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 HDGFL1Q5TGJ6 251 aa9.85□□□□□ -0.83
LIMS1-203ENST00000393310 VTI1AQ96AJ9 217 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms